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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:497262..499764 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01690.1 vs.
Match: EWM30517.1 (hypothetical protein Naga_100013g33 [Nannochloropsis gaditana]) HSP 1 Score: 346.7 bits (888), Expect = 9.200e-92 Identity = 187/229 (81.66%), Postives = 212/229 (92.58%), Query Frame = 0
Query: 147 RQLFLLALLPAVAVAFMGPARMPRG-VRMMSDVMDKPKVSPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAIDKALELNEKYALVDKTTDAVKKAVNKAKDSI 375
RQLFLLALLPAVA++FMG R+ RG VRMMSD+MDKPK+SPA ST PP GGE K ALVP+N QTIETSAAIV TSAGIVFLGP+LG++LGL+TNYAAK DN+VGEAARGVGKTALEVFNYI K+NSKYQIG KVS+SASSLV+KLKEN+GEDSVV+KLEET E+TKTKL+DLD++YDLV+KAKSAVGL VDFSN+AIDKALELNEKY++VDKTTDAVKKAVNKAK+SI
Sbjct: 4 RQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVST-PPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKESI 231
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp CCTAGACGTGCAAGGCTCCTTTGTTCTGCTTCTTGTCAATGCTTGTAAGC TTAAATCAGGTGGAGGAGAGAGAATGCCGTTGTTGAACAGTTGCGGGACT CAAGGGTTTCGAGATTTGCAGCGCGTTATAGGGAGTCCAGCGTGGTTTGC CCGCACTGCCGTGGGGCTGGCCGCGAACGGGAGGAAGAAGGAAAAAGGAT GCTTCGCGTGCATGCATCATGCACGCTGCTCCTGCAGCTCCTCCTCCTCC TCTTCCTCCGCCTCCTCCTCGTCGTGGTTGGAAGTCATTTCCTTAATTGT GCCTGGCCTCTCTCGGATTTCCCACCATTTGTTGGTCTCTAACGGGTTGA ATGCATTTATGAAGACACCAAGGCCGGAAGGCCAGCGTGCGAGTCTCGCG CCTTGCAATGGCGGGAAGGCCTTGTGGTTGCTCACGCGACAAAATCTAAC TCTTGGCTCCTCCTTTACATCCTCTCAGGCAACCGCCTCCCCTCCACCTT TCACAATGGTCCGACAACTCTTCCTTTTGGCACTGTTACCAGCAGTCGCT GTGGCCTTCATGGGCCCCGCCCGCATGCCAAGGGGTGTACGAATGATGTC TGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCCC CGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTGCCTATCAACACGCAG ACTATCGAGACGAGCGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTTT CCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGATCACCAATTATGCAG CCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGACG GCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAATAGCAAGTATCAAAT TGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAGG AGAATGAGGGGGAAGATTCGGTCGTATCGAAACTGGAGGAGACCCTTGAG ACGACCAAGACGAAGTTGACCGATTTAGATGAGCAGTACGATCTGGTGAC CAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCTA TTGACAAGGCATTGGAGTTGAACGAGAAGTACGCCCTGGTTGACAAGACT ACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAAT ATCTGGCAGAGAGATGGGAGAGATGGGAGAGATGGGGGATGGATTGAGAA GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAACAGCAGTAGCA CCAGTAGGACAACAGGGGCTAAAGTGCCATATTTTTGGTCAGAGAGGGGC CGCTTCCTGTAATTGTCGGGTCTCAGACCTAACCGTACGCTTCGTTCTTG TGTGCTCCTTCTGTTGCACGTGCTCTGTCTGGAGTTACCAGCCCAGGCAG AGAGAGAGAAGATATGAGTGAGCGAAATTGAGGGGCTGGGGAAAAAGAGA GAGCCGCGCTCAGTGCGGTAGTGTTTGTTGCTTGCCGTCCGTACGGGCGT CCGTCATTGCATTTGAGATTAATTTATTTTTATCTCTGTTTGTTTTTCTG TTCCCCCTTCTGTCATATAATATATATATATACATATATATATTATAAGG CACCCTTTTTTTCCCGACTTCTCTTTACCCCGAGTTGAATTTTCTTCTGT GTCGGGAGGACTCCTTTTTTAAGGAGCTGAGTGTTTCCCTTCCTCCCTCG TCGTCTGTTACCAACTCCATCATCTCCATCGTTGCAGTCATTTGTATCGC CGTTCTTAGAAAAATAAGAGGTAAGAGATAGCAAGGTACAGCCTGTCTTT AATGTGGCAGCACAGCGACTACGCACAGAAGGATATGAAAAGAAGAAGAA GGAGGACGGCGAAGGAAGAAACTTGGAGGGCAGCAACACAGATCGGCAGT CAGAAAAATAGATTTCACCAGAGAGAAAGGCGGTGATGAAAAACAGTAGC ATTCGACCGATTAAACCAGTTTCCACGCCACATCATTCAAAGAAACAAAA CAGATACCGAGAGATGA back to topprotein sequence of NO02G01690.1 >NO02G01690.1-protein ID=NO02G01690.1-protein|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp MPLLNSCGTQGFRDLQRVIGSPAWFARTAVGLAANGRKKEKGCFACMHHA RCSCSSSSSSSSASSSSWLEVISLIVPGLSRISHHLLVSNGLNAFMKTPR PEGQRASLAPCNGGKALWLLTRQNLTLGSSFTSSQATASPPPFTMVRQLF LLALLPAVAVAFMGPARMPRGVRMMSDVMDKPKVSPAFSTSPPTGGENKG GALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVG EAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSV VSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAIDKALELN EKYALVDKTTDAVKKAVNKAKDSI* back to topmRNA from alignment at chr2:497262..499764- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp|location=Sequence derived from alignment at chr2:497262..499764- (Nannochloropsis oceanica) CCTAGACGTGCAAGGCTCCTTTGTTCTGCTTCTTGTCAATGCTTGTAAGC
TTAAATCAGGTGGAGGAGAGAGAATGCCGTTGTTGAACAGTTGCGGGACT
CAAGGGTTTCGAGATTTGCAGCGCGTTATAGGGAGTCCAGCGTGGTTTGC
CCGCACTGCCGTGGGGCTGGCCGCGAACGGGAGGAAGAAGGAAAAAGGAT
GCTTCGCGTGCATGCATCATGCACGCTGCTCCTGCAGCTCCTCCTCCTCC
TCTTCCTCCGCCTCCTCCTCGTCGTGGTTGGAAGTCATTTCCTTAATTGT
GCCTGGCCTCTCTCGGATTTCCCACCATTTGTTGGTCTCTAACGGGTTGA
ATGCATTTATGAAGACACCAAGGCCGGAAGGCCAGCGTGCGAGTCTCGCG
CCTTGCAATGGCGGGAAGGCCTTGTGGTTGCTCACGCGACAAAATCTAAC
TCTTGGCTCCTCCTTTACATCCTCTCAGGCAACCGCCTCCCCTCCACCTT
TCACAATGGTCCGACAACTCTTCCTTTTGGCACTGTTACCAGCAGTCGCT
GTGGCCTTCATGGGTAAGTACATCATCTCTTGCGAAAGAAGGAAGGAAGG
GAGGGAGCTGTTGGCAAGGATGCCCTAAGCGGCGTGTGCCCGCGATAACG
ATTAATCCCACGCTCACATGCATGCTCACCCACACGACCCACTCGCGCCT
GCTTCTCCTCCACCTCTTCTCACGACTCATCTCAGGCCCCGCCCGCATGC
CAAGGGGGTAAGTACAACTGTGGGAATGGATGCCGTTTGACTCGTAGCAG
TGGTCTTAGCTGACGTTCAGCATTATATGTGGGAGGCTTCAATGCATCCT
CCTCATTTTTTACATGGAGTTTTGCTTACACCCGTAACTCCTCAACGCTT
AATCTGCCTTATGTGCTTTTGTGCGAACCAAACCTCTGTTTTCCTCAGCT
TCATCGCAACTTCACCAGCAACAGCCAAGCAACTCATCCTCTCTCTCCTT
TTTCCCCCTTCTTACCTCCAGTGTACGAATGATGTCTGATGTGATGGACA
AGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAG
AATAAGGGCGGGGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAG
CGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGT
TGGGTGTGCTTCTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAAT
GAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTT
CAATTACATTGCCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCT
CGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAA
GATTCGGTCGTATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAA
GTTGACCGATTTAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTG
CAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTG
GAGTTGAACGAGAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAA
GAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAATATCTGGCAGAGAGA
TGGGAGAGATGGGAGAGATGGGGGATGGATTGAGAAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTGAACAGCAGTAGCACCAGTAGGACAACA
GGGGCTAAAGTGCCATATTTTTGGTCAGAGAGGGGCCGCTTCCTGTAATT
GTCGGGTCTCAGACCTAACCGTACGCTTCGTTCTTGTGTGCTCCTTCTGT
TGCACGTGCTCTGTCTGGAGTTACCAGCCCAGGCAGAGAGAGAGAAGATA
TGAGTGAGCGAAATTGAGGGGCTGGGGAAAAAGAGAGAGCCGCGCTCAGT
GCGGTAGTGTTTGTTGCTTGCCGTCCGTACGGGCGTCCGTCATTGCATTT
GAGATTAATTTATTTTTATCTCTGTTTGTTTTTCTGTTCCCCCTTCTGTC
ATATAATATATATATATACATATATATATTATAAGGCACCCTTTTTTTCC
CGACTTCTCTTTACCCCGAGTTGAATTTTCTTCTGTGTCGGGAGGACTCC
TTTTTTAAGGAGCTGAGTGTTTCCCTTCCTCCCTCGTCGTCTGTTACCAA
CTCCATCATCTCCATCGTTGCAGTCATTTGTATCGCCGTTCTTAGAAAAA
TAAGAGGTAAGAGATAGCAAGGTACAGCCTGTCTTTAATGTGGCAGCACA
GCGACTACGCACAGAAGGATATGAAAAGAAGAAGAAGGAGGACGGCGAAG
GAAGAAACTTGGAGGGCAGCAACACAGATCGGCAGTCAGAAAAATAGATT
TCACCAGAGAGAAAGGCGGTGATGAAAAACAGTAGCATTCGACCGATTAA
ACCAGTTTCCACGCCACATCATTCAAAGAAACAAAACAGATACCGAGAGA
TGA back to topCoding sequence (CDS) from alignment at chr2:497262..499764- >NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:497262..499764- (Nannochloropsis oceanica) ATGCCGTTGTTGAACAGTTGCGGGACTCAAGGGTTTCGAGATTTGCAGCG CGTTATAGGGAGTCCAGCGTGGTTTGCCCGCACTGCCGTGGGGCTGGCCG CGAACGGGAGGAAGAAGGAAAAAGGATGCTTCGCGTGCATGCATCATGCA CGCTGCTCCTGCAGCTCCTCCTCCTCCTCTTCCTCCGCCTCCTCCTCGTC GTGGTTGGAAGTCATTTCCTTAATTGTGCCTGGCCTCTCTCGGATTTCCC ACCATTTGTTGGTCTCTAACGGGTTGAATGCATTTATGAAGACACCAAGG CCGGAAGGCCAGCGTGCGAGTCTCGCGCCTTGCAATGGCGGGAAGGCCTT GTGGTTGCTCACGCGACAAAATCTAACTCTTGGCTCCTCCTTTACATCCT CTCAGGCAACCGCCTCCCCTCCACCTTTCACAATGGTCCGACAACTCTTC CTTTTGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGGCCCCGCCCG CATGCCAAGGGGTGTACGAATGATGTCTGATGTGATGGACAAGCCCAAGG TGAGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAGAATAAGGGC GGGGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAGCGCCGCGAT CGTAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGTTGGGTGTGC TTCTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAATGAGGTCGGG GAGGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTTCAATTACAT TGCCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCTCGGACTCGG CCTCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAAGATTCGGTC GTATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAAGTTGACCGA TTTAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTGCAGTGGGCC TGGCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTGGAGTTGAAC GAGAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAAGAAGGCCGT GAACAAGGCAAAGGACTCGATTTAA back to top
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