NO02G01280.1, NO02G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01280.1
Unique NameNO02G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1114
Alignment locationchr2:387598..388922 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:387598..388922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01280.1 vs.
Match: EWM30540.1 (t-snare family protein [Nannochloropsis gaditana])

HSP 1 Score: 518.5 bits (1334), Expect = 1.500e-143
Identity = 280/323 (86.69%), Postives = 299/323 (92.57%), Query Frame = 0 
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHG-GPAAAAATGAA--GSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQETNPKAARAKDMLNQMKDETTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCVMVLVGILVLVLFVFRKQVGV 321
            MNDRL ELRAKGGG     PSDSVGIDMT L G G  A AA  AA   ++QPQ+MN+FFTDVEATKEDINAIKEAIRRM+ IHQEAFLATTGP+EAKLS ELNAVIQETNPKAARAK ML++MKDETTKLRQD+RC PSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIK+KVQRQVQIVKPDAS EEIEAVFKSGGG D+VITQAILKGANESIR+VYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGE+LDQIEYQVKGAANYVE+GTLQVQGAI +AKKARKYQCCMLVC+MVLVGILVLVLFVF+KQ+G+
Sbjct:   13 MNDRLAELRAKGGG----TPSDSVGIDMTRLQGRGDGAGAAPSAAVTNASQPQYMNDFFTDVEATKEDINAIKEAIRRMSGIHQEAFLATTGPREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDSRCTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILKGANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKARKYQCCMLVCIMVLVGILVLVLFVFKKQIGL 331
The following BLAST results are available for this feature:
BLAST of NO02G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30540.11.500e-14386.69t-snare family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01280NO02G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01280.1NO02G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01280.1.cds1NO02G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01280.1.cds2NO02G01280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01280.1 ID=NO02G01280.1|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
TCACACTCACGACACACACGCCACACCTCAGACCACGACGACGCTATGAA
CGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGGGAGCA
TGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAGGCCCA
GCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAATTCAT
GAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAATGCCA
TCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGTTTTTG
GCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAATGCGGT
CATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCTCAACC
AGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTAACCCC
TCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGTAAATT
TGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAAAGCCT
TCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCGACGCC
TCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCAGATGA
GGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCGAAGCG
TGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGGAAGCG
AGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTGGTGGA
GCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGGGGCTG
CAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCGAGAGT
GCGAAAAAGGCGCGGAAGTACCAGTGTTGTATGCTCGTCTGTGTGATGGT
GTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAGGAAGCAAGTGG
GTGTGTAAGAGGAGAGTAAAAGCAAAGAGGAATTACTGATGATGTCCGGC
GGTCGACGACGAGAGGCATGCACGCACACAAAATATGAATGTTAAAACTC
TGTAGAAGCCGATG
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protein sequence of NO02G01280.1

>NO02G01280.1-protein ID=NO02G01280.1-protein|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQ
FMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELN
AVIQETNPKAARAKDMLNQMKDETTKLRQDTRCNPSQLRIRDNLTNTLTR
KFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGA
DEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALL
VEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCV
MVLVGILVLVLFVFRKQVGV*
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mRNA from alignment at chr2:387598..388922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01280.1 ID=NO02G01280.1|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at chr2:387598..388922+ (Nannochloropsis oceanica)
TCACACTCACGACACACACGCCACACCTCAGACCACGACGACGCTATGAA
CGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGGGAGCA
TGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAGGCCCA
GCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAATTCAT
GAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAATGCCA
TCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGTTTTTG
GCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAATGCGGT
CATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCTCAACC
AGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTAACCCC
TCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGTAAATT
TGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAAAGCCT
TCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCGACGCC
TCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCAGATGA
GGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCGAAGCG
TGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGGAAGCG
AGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTGGTGGA
GCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGGGGCTG
CAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCGAGAGT
GCGAAAAAGGTATGTCAACGAGGGGTGTATTTGGGTCGGATGCGAAGAGT
GGTGTGTGGAATGATAATGGACGGGATGGGGATTTTAGTTGGGGTTTACG
TGGTTGTTAATAGGGCAAGGTGTCGGCACTTACTGTTTTTCCTCACTTAA
GTGTTGCTTTGTCTCTATTGTCTCTAACTCGCTCTGATCCCCTCGTCTTC
TCTCAACTCACAACCCACAGGCGCGGAAGTACCAGTGTTGTATGCTCGTC
TGTGTGATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAG
GAAGCAAGTGGGTGTGTAAGAGGAGAGTAAAAGCAAAGAGGAATTACTGA
TGATGTCCGGCGGTCGACGACGAGAGGCATGCACGCACACAAAATATGAA
TGTTAAAACTCTGTAGAAGCCGATG
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Coding sequence (CDS) from alignment at chr2:387598..388922+

>NO02G01280.1 ID=NO02G01280.1|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr2:387598..388922+ (Nannochloropsis oceanica)
ATGAACGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGG
GAGCATGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAG
GCCCAGCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAA
TTCATGAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAA
TGCCATCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGT
TTTTGGCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAAT
GCGGTCATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCT
CAACCAGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTA
ACCCCTCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGT
AAATTTGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAA
AGCCTTCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCG
ACGCCTCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCA
GATGAGGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCG
AAGCGTGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGG
AAGCGAGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTG
GTGGAGCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGG
GGCTGCAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCG
AGAGTGCGAAAAAGGCGCGGAAGTACCAGTGTTGTATGCTCGTCTGTGTG
ATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAGGAAGCA
AGTGGGTGTGTAA
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Synonyms
Publications