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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:348452..349939 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01100.1 vs.
Match: EWM30489.1 (rrna maturation factor [Nannochloropsis gaditana]) HSP 1 Score: 340.1 bits (871), Expect = 1.100e-89 Identity = 220/446 (49.33%), Postives = 283/446 (63.45%), Query Frame = 0
Query: 6 PFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSPLSSLSYSSSSSSSSFASSSVTVTTARLSS---FHRHRSPFMPPTNTALFASSTASSGAGKKKKAASLKSKASVKK-VIEDEEDDEDEMTEAELLKVMQSGEAMDAVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGNDDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQIRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRYRGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQCARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGYDHETEKEYEEMVREEERVISEFARRF-----PEAAPPMGEPKKSKER 443
P SS+P++LI+ + + RR +G W SPL + + +S F S ++T RSPF T +++ S+G G ++K K + K V EDE +D EMTE ELLK+MQSGEAMDAVWQRMMSQME AL+ EDD++E+D +E + E+E+ ++E+ EE+ + K + SS Q D LGTIQIRNSQR+I+LD+D+LH +R I+EI+GK DHDVSLWLTNDRSIREYNDRYRGKR+ATDILSFPFHEY++PG+PT ES AL G++KDLGDM+VS YVQRQC RD+ADW +GEN WS ERGASGAMARV+ VQ RLPFLVIHG+LHLLG+DHET+K+Y EMV+EE+RV++EF ++F EAAP M +R
Sbjct: 3 PLSSTPLILIMF-------------LCYGSAPRRVLGFRIIWNSPLHYATPHLGARTSGFPPSQTALSTWSCCPPLVQSSRRSPFQSSTLRFAIPAASFSAGKGNERKVKDHKRRTPKNKHVDEDETNDVQEMTETELLKIMQSGEAMDAVWQRMMSQMEGMEALDSEDDEDEEDWEEFDKEEEEEEEEEEEEEE------------------------EEKEEVAVGRRVHSSFQSPFPEDKPLGTIQIRNSQRTIALDLDLLHAQVRTILEIVGKSDHDVSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPGIPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQADWLEKGENLWSGERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLAEFKKKFASTGLSEAAPEMNRGDAGGQR 411
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA back to topprotein sequence of NO02G01100.1 >NO02G01100.1-protein ID=NO02G01100.1-protein|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp MPQRFPFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSP LSSLSYSSSSSSSSFASSSVTVTTARLSSFHRHRSPFMPPTNTALFASST ASSGAGKKKKAASLKSKASVKKVIEDEEDDEDEMTEAELLKVMQSGEAMD AVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGN DDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQ IRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRY RGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQ CARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGY DHETEKEYEEMVREEERVISEFARRFPEAAPPMGEPKKSKERNIAAAAVG EDGGKAKKKASGVRATKTTTAPKRTASAAASSKSKAPPKNDFDSR* back to topmRNA from alignment at chr2:348452..349939+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr2:348452..349939+ (Nannochloropsis oceanica) ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA back to topCoding sequence (CDS) from alignment at chr2:348452..349939+ >NO02G01100.1 ID=NO02G01100.1|Name=NO02G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr2:348452..349939+ (Nannochloropsis oceanica) ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA back to top
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