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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:261425..265900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00790.1 vs.
Match: XP_005852699.1 (60s ribosome subunit biogenesis protein nip7-like protein [Nannochloropsis gaditana CCMP526]; EKU23132.1 60s ribosome subunit biogenesis protein nip7-like protein [Nannochloropsis gaditana CCMP526]; EWM30578.1 60s ribosome subunit biogenesis protein nip7 [Nannochloropsis gaditana]) HSP 1 Score: 351.7 bits (901), Expect = 1.400e-93 Identity = 166/180 (92.22%), Postives = 177/180 (98.33%), Query Frame = 0
Query: 1 MRPLAEEETKKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERLMKTATNFGRDNLLSLGTCVGRFTKTEKFHISITFLDYLAQYASYKVWVKPQSEMGFLYGNNIVKSGLGRMTEAIPQYAGVVVFSMTDIPLGFGVAAQPTEVCKDLDPGANVVLHQGDVGEYLRVEDELS 181
MRPL+E+ET+KVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSER+MK ATNFGR++LLS+GTCVGRFTK+EKFHI ITFLDYLAQYASYKVWVKPQSEMGFLYGNNI+KSGLGRMTE IPQYAGVVV+SMTDIPLGFGVAAQPT+VCKDLDPGANVVLHQGDVGEYLRVEDELS
Sbjct: 1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDELS 180
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00790.1 ID=NO02G00790.1|Name=NO02G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=4027bp CGGTTTCGGTTCTAGTTGTGCAAATTTCTTTCTTTTCTGTGCTGATATAT GTGCGCCTCGTCCATTCTCGTCCCCCTCCTTCGGTTTGCTCTCCTCCTTG CCTTACCATTGCATCTGGCACATTGAATGCTAAAAACACGAGACGGAATA TTTACTCTTTGATCCTCTCATCCTCACACATGACACTTGCATCTTCCCCT ACGAAAAATCGGTGGCAAAATCGTACGCCTCGTCCATGGCTGTTGCTCCC GACCCTCCCGTTCGCCTAGTTATCTTGCGCGCTTTTTTCTTCTCCGCCGC CCACTTTTTCTTCGCTGCTTGATTCACTTGAGGGTTCAATCCATCCTCGT CCACGTTGTCCAGTGTCATCATCATGCTGACGGCGCTTATGGCTGAGCTT GATGCCACAGCCTTTCCCCTCTTCTTCGGCCCCTTCTCCTTGGGCAAAGA AGCTGCCGCCACTTTCCCCTTCACTGTCGCTGTCATGGTCGCGGCCACTT TGCTATTCGTGCCGCGTTGTTGCGAAAGCGCCTGGGCCGCATGCTGCTTC CTCGCCCCTCCACGAGTCGACCGCGACACTGGTGCCTCACTGACTTCCAC CTCTCCATCCACCTCCTCTTTCTCCTCACCATTCTCCTCATAATCCATAT CCATCACCTCCTCCTCCTTACTCTCCTCCTCCTCTATATCCTCCATCATC CCCCCCCCGCAACACCGCCACTCTCAAATGCCACGAAATTTCCTCCCTCC TTCCCCCCCTCCTCCAAGAAAGCCATAAGCTTGGCATCGCCCTCCTCAAT CACTGTGCCGGTATTAAACGCAGCTCCCAGCGTCCCCACTAGCTGCGCCT CCTCTTCGACCGAGGAGGAAGGTAGGGAAGGTGGTTTCGTATAAAAAGGA ACCTTACCCGTGTTCCAATCCCGCAGCAACACTCTTGCTGCCGAATTGCG ATCAGGCACACCCCCCCTTAACAATTTGCCCATCTTCCGGGCAAGCAATG CCAAGAATCCCTGGACATCTGCAGGGTCAAAGCGAGGGAGGGCGTATATC ATCATCAGGTCTTGTGAGTCACACCGCTTGAGGAGAGCCGCAACGGCCGT AGGAGGGTCAGAGAGGGAGTCGACATTCACGCAATTGCGCAGCAGGACCC CTTCCACGTCCGCGTCATCGAAAACAATACCCGGAGAATCCAAAAGCTTG ATGTTCTTGTCGAGTTGCACCTCCTGCATGCATTTGGTGAACCCCGGCGT GCTCGACACACCTGCCGCCTTGGTCCGCTTCAACGAATTAATCACCGACG ATTTCCCCACGTTAGGGTACCCTACAATCCCAACGCTAATACTGGTCTTG ATGTCCAAGGACCGGCAATAGTTCTTGAGCAGTTGCATGAGGGCTTCCGC CCCCACGGAGCCACTGCGGGAGAGGACGTTCGCAGATGCCTTGGAAGCAT CGCCAGCGTGTTGAGACAGCTGGGATTTCTGTTCCTGCGTGGCGCATTTA AAGGCTACGGTCGGGTGAAAGCGACGGAGGTATGCGAGCCATTCGCTGAC GACCTCCTTGGGGACAAGGTCGACTTTGTTGAGGACCAGGACGAGTTTTT TGTTGGGCTTCCGGAGGATCAGTTCCTCCACGGCTTCAGCACGAGAGCCG AGGGGGTCACGCGCGTCGAGGACTTCGAGGACGACGTCTGCTTGTTCAAC CACCTCTTTTAGGTCACGGATGAAGGCCCGACGACTCTGTTGGCCGAGTG CGCGTTCTTTGGGCGCGCTCGCTGCCTTGGTGGCGTCGGTAATTGAGAAA GATTGCTGGGCGGCCGTGGCTTGCTTTACCAGGTCCGTCACGTCTTTTCC GATCAACCCCCCCTGCTTCCGACGTAGGACTGCCTCCTCCTTCTTTTTGA TTTCTTCGTCTTCCTTGTTACGCTTGGCGGTGGCGAGTTCCTCGAGGAGT TGCTCCTTGAAGGGCCAGGCGTTGGGAATGCTTGTGTCATTTTTCCGTTG CCCGATTCCGATAGGAGGGAGGCCCAACTTGGCACGCCGCTTGGTTTCCT TCTTATTTTTACGTTTGTGCTCCTTGACATGCCGTTCGATCTTGTACTTT TGCTTGAAGGTCATGCGCTTTGACTTGCCCTTTTTCTTTACCATAATTGA CTGTTGATATTGTGAAGGAAAGGTAGGCAGAGAGGTTGTGAGAGAGGGCG GATTAGATACGGTGCCGAGGAGATGAGGATCAAATAATGTCACGGAAAAA GTCGTTCAGTACATATCATGTCAAATGAATACTCATGAATATGGATAGGG AAAAATGTTTCGTCGACCATGAACCGTAAACCCTCCATGGAAGAAGTGGG GGGGACGGCAACCAAAGGATCGCGGTGTTGCTCTCCCCGTGCTAGTTAGA TCGATTAAACGCTAAGCCATTGACATCGTGGCCTGCATTTGCCCAGATCT AGGGTGAATGCATATTTGGATTTTTACCCACTAGTCTCTTAATCCTTCCC TTCCTCTTTCCCTCTCCACCTCGCCATGCCGGCAGACGCTTGCATGCGCA TGTCCGCTGACCCTGGTGAAATCCCTCATCCGCGCCGACTTGCATGCTTG CCGCTGTTAAGTACCTACGCAGATAGACAGACCAATTCGCCCGCATGGGG TGGTGGTTGTAGGGGCGAACAAGTGCGTCTTGGCATAGATACACTCCTGC CCATCTACCTCCTGCCCCCCTGTCTCCCTTTACAACCCATTCACACACAT GACACAAACACATACACATACAAACACACAAACTATCATACAGAACATAT CTACGCACCTAGCCCCGAGAAACCTCTGTAAATTGCTGCGTTGAGCTTCT ACGGGCTGCCGTCGGCGCTTTTGGATGAAGTATCTCTTGATCCCCTGTGG TGTGGATGGTTGAGGGGGAGCAAGGGATGTTCAGGACAAGCCAAAGGCAT CGGGGAAACAAAAGTGATTCGTCTGCAGGTACTCGACGACATTACGCTTA TGAGATGACTTTTTTGTGGCTGTTTGTAGGAGCACGCGAGTAAAAAGGAC ATGCCCATGCGGTCTCCTTGCTGCCTCGCCACCCATCGCTTCCGACGTAC ACATCCCCGCCCATTCACCACACTCAGACCCCAAAATCCTTTGCGCAATT CGCACCATTCATAGCCACAAACGATTACAGACTACTTCTATCAAAACTGC TTAACTATACAAACTCATATCGTCCATTCCTTTCCTCCTGCGTTAAAAGA CACAGGCCATAAGTTTCTCGCTTCGACCTCCCCATCCCACCCCAGCGCAG CCCATCTCCATCGTTCCCAACACAGCAACATTCTACCCACAAATAATGCG GCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCAAGT ACGTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGGTAT TGCTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGCTTGAT GAAGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCACGT GCGTCGGGCGATTCACCAAGACCGAGAAATTTCATATCAGCATCACCTTC CTGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCCGCA AAGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCCTAG GGCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTTTCC ATGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGAAGT TTGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAGATG TGGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAGGAGGGGGAGGG AGGATGGGAGGATGGGTAGGAGGGAGGTTGTAGAAAGGGAGATGAGAGAG CGAGGGAGAGATGGGGTAAAGTGAGAAGAGAGAAGGAAAGAAGGAAATCA TGTACAGTTATTTACATGGGAGGAGGA back to topprotein sequence of NO02G00790.1 >NO02G00790.1-protein ID=NO02G00790.1-protein|Name=NO02G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp MRPLAEEETKKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSER LMKTATNFGRDNLLSLGTCVGRFTKTEKFHISITFLDYLAQYASYKVWVK PQSEMGFLYGNNIVKSGLGRMTEAIPQYAGVVVFSMTDIPLGFGVAAQPT EVCKDLDPGANVVLHQGDVGEYLRVEDELS* back to topmRNA from alignment at chr2:261425..265900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00790.1 ID=NO02G00790.1|Name=NO02G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=4476bp|location=Sequence derived from alignment at chr2:261425..265900+ (Nannochloropsis oceanica) CGGTTTCGGTTCTAGTTGTGCAAATTTCTTTCTTTTCTGTGCTGATATAT
GTGCGCCTCGTCCATTCTCGTCCCCCTCCTTCGGTTTGCTCTCCTCCTTG
CCTTACCATTGCATCTGGCACATTGAATGCTAAAAACACGAGACGGAATA
TTTACTCTTTGATCCTCTCATCCTCACACATGACACTTGCATCTTCCCCT
ACGAAAAATCGGTGGCAAAATCGTACGCCTCGTCCATGGCTGTTGCTCCC
GACCCTCCCGTTCGCCTAGTTATCTTGCGCGCTTTTTTCTTCTCCGCCGC
CCACTTTTTCTTCGCTGCTTGATTCACTTGAGGGTTCAATCCATCCTCGT
CCACGTTGTCCAGTGTCATCATCATGCTGACGGCGCTTATGGCTGAGCTT
GATGCCACAGCCTTTCCCCTCTTCTTCGGCCCCTTCTCCTTGGGCAAAGA
AGCTGCCGCCACTTTCCCCTTCACTGTCGCTGTCATGGTCGCGGCCACTT
TGCTATTCGTGCCGCGTTGTTGCGAAAGCGCCTGGGCCGCATGCTGCTTC
CTCGCCCCTCCACGAGTCGACCGCGACACTGGTGCCTCACTGACTTCCAC
CTCTCCATCCACCTCCTCTTTCTCCTCACCATTCTCCTCATAATCCATAT
CCATCACCTCCTCCTCCTTACTCTCCTCCTCCTCTATATCCTCCATCATC
CCCCCCCCGCAACACCGCCACTCTCAAATGCCACGAAATTTCCTCCCTCC
TTCCCCCCCTCCTCCAAGAAAGCCATAAGCTTGGCATCGCCCTCCTCAAT
CACTGTGCCGGTATTAAACGCAGCTCCCAGCGTCCCCACTAGCTGCGCCT
CCTCTTCGACCGAGGAGGAAGGTAGGGAAGGTGGTTTCGTATAAAAAGGA
ACCTTACCCGTGTTCCAATCCCGCAGCAACACTCTTGCTGCCGAATTGCG
ATCAGGCACACCCCCCCTTAACAATTTGCCCATCTTCCGGGCAAGCAATG
CCAAGAATCCCTGGACATCTGCAGGGTCAAAGCGAGGGAGGGCGTATATC
ATCATCAGGTCTTGTGAGTCACACCGCTTGAGGAGAGCCGCAACGGCCGT
AGGAGGGTCAGAGAGGGAGTCGACATTCACGCAATTGCGCAGCAGGACCC
CTTCCACGTCCGCGTCATCGAAAACAATACCCGGAGAATCCAAAAGCTTG
ATGTTCTTGTCGAGTTGCACCTCCTGCATGCATTTGGTGAACCCCGGCGT
GCTCGACACACCTGCCGCCTTGGTCCGCTTCAACGAATTAATCACCGACG
ATTTCCCCACGTTAGGGTACCCTACAATCCCAACGCTAATACTGGTCTTG
ATGTCCAAGGACCGGCAATAGTTCTTGAGCAGTTGCATGAGGGCTTCCGC
CCCCACGGAGCCACTGCGGGAGAGGACGTTCGCAGATGCCTTGGAAGCAT
CGCCAGCGTGTTGAGACAGCTGGGATTTCTGTTCCTGCGTGGCGCATTTA
AAGGCTACGGTCGGGTGAAAGCGACGGAGGTATGCGAGCCATTCGCTGAC
GACCTCCTTGGGGACAAGGTCGACTTTGTTGAGGACCAGGACGAGTTTTT
TGTTGGGCTTCCGGAGGATCAGTTCCTCCACGGCTTCAGCACGAGAGCCG
AGGGGGTCACGCGCGTCGAGGACTTCGAGGACGACGTCTGCTTGTTCAAC
CACCTCTTTTAGGTCACGGATGAAGGCCCGACGACTCTGTTGGCCGAGTG
CGCGTTCTTTGGGCGCGCTCGCTGCCTTGGTGGCGTCGGTAATTGAGAAA
GATTGCTGGGCGGCCGTGGCTTGCTTTACCAGGTCCGTCACGTCTTTTCC
GATCAACCCCCCCTGCTTCCGACGTAGGACTGCCTCCTCCTTCTTTTTGA
TTTCTTCGTCTTCCTTGTTACGCTTGGCGGTGGCGAGTTCCTCGAGGAGT
TGCTCCTTGAAGGGCCAGGCGTTGGGAATGCTTGTGTCATTTTTCCGTTG
CCCGATTCCGATAGGAGGGAGGCCCAACTTGGCACGCCGCTTGGTTTCCT
TCTTATTTTTACGTTTGTGCTCCTTGACATGCCGTTCGATCTTGTACTTT
TGCTTGAAGGTCATGCGCTTTGACTTGCCCTTTTTCTTTACCATAATTGA
CTGTTGATATTGTGAAGGAAAGGTAGGCAGAGAGGTTGTGAGAGAGGGCG
GATTAGATACGGTGCCGAGGAGATGAGGATCAAATAATGTCACGGAAAAA
GTCGTTCAGTACATATCATGTCAAATGAATACTCATGAATATGGATAGGG
AAAAATGTTTCGTCGACCATGAACCGTAAACCCTCCATGGAAGAAGTGGG
GGGGACGGCAACCAAAGGATCGCGGTGTTGCTCTCCCCGTGCTAGTTAGA
TCGATTAAACGCTAAGCCATTGACATCGTGGCCTGCATTTGCCCAGATCT
AGGGTGAATGCATATTTGGATTTTTACCCACTAGTCTCTTAATCCTTCCC
TTCCTCTTTCCCTCTCCACCTCGCCATGCCGGCAGACGCTTGCATGCGCA
TGTCCGCTGACCCTGGTGAAATCCCTCATCCGCGCCGACTTGCATGCTTG
CCGCTGTTAAGTACCTACGCAGATAGACAGACCAATTCGCCCGCATGGGG
TGGTGGTTGTAGGGGCGAACAAGTGCGTCTTGGCATAGATACACTCCTGC
CCATCTACCTCCTGCCCCCCTGTCTCCCTTTACAACCCATTCACACACAT
GACACAAACACATACACATACAAACACACAAACTATCATACAGAACATAT
CTACGCACCTAGCCCCGAGAAACCTCTGTAAATTGCTGCGTTGAGCTTCT
ACGGGCTGCCGTCGGCGCTTTTGGATGAAGTATCTCTTGATCCCCTGTGG
TGTGGATGGTTGAGGGGGAGCAAGGGATGTTCAGGACAAGCCAAAGGCAT
CGGGGAAACAAAAGTGATTCGTCTGCAGGTACTCGACGACATTACGCTTA
TGAGATGACTTTTTTGTGGCTGTTTGTAGGAGCACGCGAGTAAAAAGGAC
ATGCCCATGCGGTCTCCTTGCTGCCTCGCCACCCATCGCTTCCGACGTAC
ACATCCCCGCCCATTCACCACACTCAGACCCCAAAATCCTTTGCGCAATT
CGCACCATTCATAGCCACAAACGATTACAGACTACTTCTATCAAAACTGC
TTAACTATACAAACTCATATCGTCCATTCCTTTCCTCCTGCGTTAAAAGA
CACAGGCCATAAGTTTCTCGCTTCGACCTCCCCATCCCACCCCAGCGCAG
CCCATCTCCATCGTTCCCAACACAGCAACATTCTACCCACAAATAATGCG
GCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGCCAAGT
AGTAAGTACTTCACGGTGGCGCTGTCTTTCCCTCTTTTCCCCCTGTCCTT
TAATCCTGCCTTCTCTCGCCTCTCTTCTGTCGGCAAGGCAGCCATGTCCG
GTATAAAGGGTACTTCTAAGAACGACCTACTAACTCCTAACTCCCATATC
CACCCCTCCTTCCAAACCGTACCTATAAATCCCTCCTTCCACACAGCGTC
GGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAACGGTATTGCTT
CCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGCTTGATGAAGA
CCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGGCACGTGCGTC
GGGCGATTCACCAAGGTTCGTGAGGGCATCGAAGAAGTATTCGGTCTATC
CCTTTTTATTGCATGTCCTTTGCTCGATGGTGGACCCAGCTCGTTCAAGC
GAAGACGCATGTCAGATAAGAAGGAATAAATGGATGAGAGGACTAAATTA
AAAAGTAATGAGGCACGTTTGGAGAGGTGCTCGTATAGAAATATTCCCTT
TTCGATGTTTATGGCTGCGCTTTTCTCAACCTCCCACCATCCCTCCCTCC
CTGCCTTGCCGTCACTCAGACCGAGAAATTTCATATCAGCATCACCTTCC
TGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAGCCGCAA
AGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGGCCTAGG
GCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTTTTTCCA
TGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACGGAAGTT
TGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGGAGATGT
GGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGAGGAGGGGGAGGGA
GGATGGGAGGATGGGTAGGAGGGAGGTTGTAGAAAGGGAGATGAGAGAGC
GAGGGAGAGATGGGGTAAAGTGAGAAGAGAGAAGGAAAGAAGGAAATCAT
GTACAGTTATTTACATGGGAGGAGGA back to topCoding sequence (CDS) from alignment at chr2:261425..265900+ >NO02G00790.1 ID=NO02G00790.1|Name=NO02G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr2:261425..265900+ (Nannochloropsis oceanica) ATGCGGCCCCTTGCAGAAGAGGAGACCAAGAAGGTCTTTGAGCGCCTGGC CAAGTACGTCGGCGGAAACCTTGAGCAGCTCGTCAACCGTCCTGACGAAC GGTATTGCTTCCGCTACATGGATCAACGCGTGTATTACGTGAGTGAACGC TTGATGAAGACCGCCACGAATTTCGGAAGGGACAATCTCCTATCTCTGGG CACGTGCGTCGGGCGATTCACCAAGACCGAGAAATTTCATATCAGCATCA CCTTCCTGGACTACTTGGCCCAGTACGCCAGCTATAAAGTCTGGGTCAAG CCGCAAAGTGAGATGGGTTTCCTCTACGGCAACAACATAGTCAAATCGGG CCTAGGGCGCATGACGGAGGCAATCCCGCAATATGCCGGGGTGGTTGTTT TTTCCATGACCGATATTCCCTTGGGGTTTGGAGTGGCGGCCCAACCAACG GAAGTTTGCAAGGATCTGGACCCCGGGGCAAATGTTGTGTTGCACCAGGG AGATGTGGGTGAGTATTTGAGGGTGGAGGATGAGCTGTCCTGA back to top
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