|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:626003..627326 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02060.1 vs.
Match: EWM24599.1 (hypothetical protein Naga_100062g5 [Nannochloropsis gaditana]) HSP 1 Score: 184.1 bits (466), Expect = 7.800e-43 Identity = 140/327 (42.81%), Postives = 184/327 (56.27%), Query Frame = 0
Query: 7 RTRPGPKARAEAFFSPSSITAPTARGTSGSLSRSSASSSSGSGWKDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSSLR----PSTLNALSPTRLNQPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEKDEQLVSPITLMSTADLSEDQRHQRRQQQQTNN-FTTPSQGPPAGRRGSTRAHLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRAAEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLCQNGEAFCACGLRVEATKGAGSLAWLQEL 329
+ RPG K AEAFF+ ++ TA T +++S+S SGWKDRLK+RCL V ERGRLIQELRG+KSP P S P + LSP+ L RP S C PS + S VMSILQ EMR + EG+A G + + ++ ++ D S + R+ R +N TP G GS + +E + E++ G++ LS EQLELM+CIEEAL+AEV AA+ LEEYS+LE+ +IEASV+ALYD L DD+AVLCPCCK+NFLL N + CACGLR + +AW E+
Sbjct: 8 KPRPGLKTSAEAFFTTTASTA-----TQRENPAAASSTSKSSGWKDRLKERCLNHVHRERGRLIQELRGLKSPPPRALSSHVPSEPLPSSTLSPS-LALLRPSESSSPSLCFNPSLMGSTVMSILQSEMRVVRMSCEEGQAHGADGKLNDDGINGFRHGENEDQSFEPRYPPRPIFASNQGHATPPSGSWLKEGGSPISRSVAEEEDRATTEYEAG------GLEDLSEMEQLELMRCIEEALEAEVMAADAEALEEYSQLESSDIEASVQALYDCH-TLSHDDIAVLCPCCKSNFLLNHNEDIACACGLR---GREQWPVAWAHEV 318
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp ACAGATCGTAGCTGTGGATACGGTTCTCGGCATCGCTGCTGCACACCTTA AAATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCA GAAGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGAC TTCGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGAT GGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGC GGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGG ATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGA ACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCG TCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGC GGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAA AGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTG TCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTT CACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAG CACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAA GATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCA ACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTG CCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAG ATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGC GGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGT GTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACG AAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTA TGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGA GAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCA CAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACAT GAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTGT CGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGAA TTTTTGGCAAAGCAGCAACGGTAA back to topprotein sequence of NO14G02060.1 >NO14G02060.1-protein ID=NO14G02060.1-protein|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MDDKGGRTRPGPKARAEAFFSPSSITAPTARGTSGSLSRSSASSSSGSGW KDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSSLRPSTLNALSPTRLN QPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEK DEQLVSPITLMSTADLSEDQRHQRRQQQQTNNFTTPSQGPPAGRRGSTRA HLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRA AEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLC QNGEAFCACGLRVEATKGAGSLAWLQELLAEVYAHHKGMCVVKEPVFFQR GMGDLWVECVTCSWSAQIL* back to topmRNA from alignment at chr14:626003..627326+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at chr14:626003..627326+ (Nannochloropsis oceanica) ACAGATCGTAGCTGTGGATACGGTTCTCGGCATCGCTGCTGCACACCTTA
AAATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCA
GAAGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGAC
TTCGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGAT
GGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGC
GGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGG
ATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGA
ACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCG
TCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGC
GGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAA
AGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTG
TCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTT
CACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAG
CACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAA
GATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCA
ACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTG
CCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAG
ATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGC
GGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGT
GTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACG
AAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTA
TGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGA
GAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCA
CAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACAT
GAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTGT
CGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGAA
TTTTTGGCAAAGCAGCAACGGTAA back to topCoding sequence (CDS) from alignment at chr14:626003..627326+ >NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr14:626003..627326+ (Nannochloropsis oceanica) ATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCAGA AGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGACTT CGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGATGG AAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGCGG TCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGGAT CCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGAAC CAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCGTC GTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGCGG GCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAAAG GATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTGTC AGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTTCA CGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAGCA CACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAAGA TGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCAAC TAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTGCC GCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAGAT CGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGCGG ATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGTGT CAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACGAA GGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTATG CGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGAGA GGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCACA AATATTGTGA back to top
|