NO14G01050.1, NO14G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01050.1
Unique NameNO14G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2107
Alignment locationchr14:350596..353151 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:350596..353151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01050.1 vs.
Match: EWM24705.1 (3-ketoacyl- thiolase peroxisomal [Nannochloropsis gaditana])

HSP 1 Score: 651.4 bits (1679), Expect = 2.000e-183
Identity = 342/420 (81.43%), Postives = 376/420 (89.52%), Query Frame = 0 
Query:    1 MTGAQTNPANRRLERLGSHLTKKPTGPGFRDGDVVVVSALRTPLCKAKRGAFKSTTTDDLLAPVLAAVVKQSGIDSASLGDIVIGNVLQAGAGAVGARMAQFYAGIPYEVPLCTVNRQCSSGLQAFFQVAAGIQSGLYSTAIAGGVESMSLTDMASSVPEINFDRVQEFKNSKDCIIPMGQTSDEVASRFRVTREEQDIFAAASHAKAEAAQKSGKFAEEIVPITV-----EGGEGEGVVVKEDEGIRPGTTAEKLGKLRSSFTEGGSTTAGNSSQMTDGAAAVVVASRGAAAEHGLPVLGVLRGAAVVGVPPDIMGVGPAVAIPAALARAGLSVEEVDVYEINEAFASQCLYCVRELGIPVEKVNPNGGAIALGHPLGATGARQIATLLHEMRRTGKRYGVVSMCIGTGMGAAAVFENE 416
            M+  QT+ AN+RLE L  HL KK + PGF  GDVVVVSALRTPLCKAKRGAFKSTTTDDLLAPVL AVVKQSG+D+A+LGDIV+GNVLQ G+GAVGARMAQFYAGIPY+VPLCT+NRQCSSGLQAF QVAA IQSGLY   IAGGVESMSLTDM++SVP++NF+RV E   SKDC IPMGQTSDEVA+RF+V+RE+QD FAAASHAKAEAA K+GKFAEEIVP+ V     +GGE E  VV+EDEGIRPGTT EKLG LRSSF+EGGSTTAGNSSQMTDGAAAV+V SRGAA   G+PV+GVLRGAAVVGVPPDIMG+GPAVAIPAALA+A L VE+VDV+EINEAFASQCLYCVREL IP+EKVNPNGGAIALGHPLGATGARQIATLLHEMRRT KR+GVVSMCIGTGMGAAAVFENE
Sbjct:    1 MSSTQTSQANKRLEHLSGHLVKKTSRPGFLGGDVVVVSALRTPLCKAKRGAFKSTTTDDLLAPVLEAVVKQSGVDAATLGDIVVGNVLQPGSGAVGARMAQFYAGIPYQVPLCTLNRQCSSGLQAFLQVAASIQSGLYEAGIAGGVESMSLTDMSTSVPDVNFERVSENALSKDCTIPMGQTSDEVATRFQVSREDQDRFAAASHAKAEAAVKAGKFAEEIVPVRVSSGGEDGGEDEVTVVREDEGIRPGTTPEKLGGLRSSFSEGGSTTAGNSSQMTDGAAAVLVMSRGAATAQGMPVMGVLRGAAVVGVPPDIMGIGPAVAIPAALAQARLRVEDVDVFEINEAFASQCLYCVRELKIPMEKVNPNGGAIALGHPLGATGARQIATLLHEMRRTRKRWGVVSMCIGTGMGAAAVFENE 420
The following BLAST results are available for this feature:
BLAST of NO14G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24705.12.000e-18381.433-ketoacyl- thiolase peroxisomal [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01050NO14G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01050.1NO14G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01050.1.cds1NO14G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01050.1.cds2NO14G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01050.1.cds3NO14G01050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01050.1 ID=NO14G01050.1|Name=NO14G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp
TGCTTTTTGGTCAAGACACTTTACGACGAGCCTCCAAATACACGTGGACT
GTTTGAGAAACTTAATACATTCTTCTCCCTTCTCGCAATAAATGAAATCA
TATCTGGTGAATTGTCAGGTGTGGTGCAAGGCTAGTGAGGAAATTGAGTC
TCGAGCAAGGAAGTAGCCGTTCCCACTTCGCTCCTTCGACAAGAACAAGC
TCCTTCATCCATTGCACGTCCTTTTTCCACACCAGAGACACATTCAGGCC
ACATGTACCAGGTCCTTTTTGTCTTTAATACCCATATTCTAACAGTCCCT
AAAACCTTTATCCTTTCACACGCATATAGGCAAGCAAGCCAAGGACCGTC
TCCCTCTATCCGAGCATCAAATCAGGCAGAGTCCTTCTTCCACAGGCTCA
CCAAAAGAACCAACAACAATGACCGGCGCTCAAACCAACCCTGCCAATCG
CCGCCTGGAGCGTCTCGGAAGCCATCTGACGAAGAAGCCTACCGGTCCCG
GCTTTCGCGACGGTGATGTCGTGGTTGTCTCTGCTCTCCGCACACCCCTT
TGCAAGGCTAAACGCGGTGCCTTCAAAAGCACCACTACTGACGACTTGCT
TGCTCCCGTCTTGGCTGCCGTGGTGAAGCAATCGGGCATCGACTCTGCTT
CCCTCGGAGACATTGTCATTGGTAACGTCTTGCAGGCGGGTGCTGGGGCT
GTTGGAGCAAGGATGGCTCAGTTCTATGCTGGAATCCCTTATGAGGTACC
TCTCTGCACCGTGAACCGCCAGTGCTCCTCCGGCCTGCAAGCTTTTTTCC
AAGTCGCCGCCGGCATTCAATCCGGGCTCTACTCCACCGCCATCGCTGGC
GGGGTGGAATCAATGTCCCTCACCGACATGGCATCCTCTGTCCCCGAAAT
CAATTTCGACCGGGTCCAGGAATTCAAAAATTCAAAAGACTGCATCATCC
CTATGGGCCAGACAAGCGATGAGGTTGCGTCAAGGTTCAGGGTCACGAGG
GAGGAACAGGACATATTCGCTGCTGCCTCGCACGCCAAGGCAGAGGCGGC
GCAGAAGAGTGGGAAATTTGCGGAGGAGATCGTGCCGATTACAGTGGAGG
GGGGAGAGGGGGAAGGAGTAGTTGTGAAGGAGGACGAGGGGATTCGCCCG
GGGACAACAGCGGAGAAATTGGGAAAATTGAGGTCAAGTTTCACGGAGGG
GGGCTCGACTACGGCAGGGAACAGTAGTCAGATGACTGACGGAGCGGCGG
CGGTGGTGGTAGCGAGTAGGGGCGCAGCAGCAGAGCATGGCTTGCCGGTG
TTGGGCGTCTTGAGGGGGGCGGCGGTTGTAGGTGTGCCTCCGGACATTAT
GGGAGTGGGGCCTGCGGTTGCTATTCCTGCGGCGTTAGCACGTGCGGGGT
TGAGCGTCGAGGAGGTGGATGTGTACGAGATTAACGAGGCGTTTGCGAGC
CAGTGCTTGTATTGTGTGCGGGAGTTGGGGATTCCAGTAGAGAAGGTCAA
CCCGAATGGGGGGGCCATTGCGCTTGGTCATCCGTTGGGGGCCACGGGGG
CGAGGCAGATTGCGACGTTGCTGCATGAGATGAGGAGGACGGGAAAGAGG
TATGGAGTGGTGAGCATGTGCATTGGCACGGGCATGGGGGCGGCGGCCGT
GTTTGAGAATGAGGGTTATAAGGTGCGGAAGTAGAGGAGAGGGGGGGTTG
AAAGGTTGTATGCATGCACAACGTTGCTGGGGGGGAAGGTGATAGAGAAA
GGAGGAGCCTTAGACAATGCTGCTGGAGATGGGCAGGGGACAAGTTGAGA
TGAGGGGGGAAAGCATCTAAACCGTAGGTAGGGTATCTTTGCTGCTGCGG
CTGTTGCTGCTAGTGCTGCAGCTGATGGTGATGCAGATGCTGGTGAGCTT
GCAGATGCAGATGCAGATGCTGCTGCATGTACACATGTCACAGGAAAAGT
TGTTTGTGGCACTCGAAAATAAAAAAGCTATATAAACGTTAAAAGAGGAG
GGCGGACAAGAAGAAGTTAAGACATCGATGAGAGCGAGGAGAGAAGATAG
AAAATTTGTCGCACAAATACGCATAGAGAAAGACGAGTCATAGGACAAAT
CAAACTG
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protein sequence of NO14G01050.1

>NO14G01050.1-protein ID=NO14G01050.1-protein|Name=NO14G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MTGAQTNPANRRLERLGSHLTKKPTGPGFRDGDVVVVSALRTPLCKAKRG
AFKSTTTDDLLAPVLAAVVKQSGIDSASLGDIVIGNVLQAGAGAVGARMA
QFYAGIPYEVPLCTVNRQCSSGLQAFFQVAAGIQSGLYSTAIAGGVESMS
LTDMASSVPEINFDRVQEFKNSKDCIIPMGQTSDEVASRFRVTREEQDIF
AAASHAKAEAAQKSGKFAEEIVPITVEGGEGEGVVVKEDEGIRPGTTAEK
LGKLRSSFTEGGSTTAGNSSQMTDGAAAVVVASRGAAAEHGLPVLGVLRG
AAVVGVPPDIMGVGPAVAIPAALARAGLSVEEVDVYEINEAFASQCLYCV
RELGIPVEKVNPNGGAIALGHPLGATGARQIATLLHEMRRTGKRYGVVSM
CIGTGMGAAAVFENEGYKVRK*
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mRNA from alignment at chr14:350596..353151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01050.1 ID=NO14G01050.1|Name=NO14G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2556bp|location=Sequence derived from alignment at chr14:350596..353151- (Nannochloropsis oceanica)
TGCTTTTTGGTCAAGACACTTTACGACGAGCCTCCAAATACACGTGGACT
GTTTGAGAAACTTAATACATTCTTCTCCCTTCTCGCAATAAATGAAATCA
TATCTGGTGAATTGTCAGGTGTGGTGCAAGGCTAGTGAGGAAATTGAGTC
TCGAGCAAGGAAGTAGCCGTTCCCACTTCGCTCCTTCGACAAGAACAAGC
TCCTTCATCCATTGCACGTCCTTTTTCCACACCAGAGACACATTCAGGCC
ACATGTACCAGGTCCTTTTTGTCTTTAATACCCATATTCTAACAGTCCCT
AAAACCTTTATCCTTTCACACGCATATAGGCAAGCAAGCCAAGGACCGTC
TCCCTCTATCCGAGCATCAAATCAGGCAGAGTCCTTCTTCCACAGGCTCA
CCAAAAGAACCAACAACAATGACCGGCGCTCAAACCAACCCTGCCAATCG
CCGCCTGGAGCGTCTCGGAAGCCATCTGACGAAGAAGGTATGTATGAAAA
TGCCGGCGGAAGGAGGGTTTGGCGGTAGGGTTGAGGGAGGGAGTGTTGAT
GCAGGAAAGGCACACAACTTCAATGCGCATGACTTCGTCAGGGATACCCT
AAGCTTGTAAGACTCTGGATACATCTGGAAGATGTGTGACTTTTGAATGA
TGTGTACATAAGTCATTTTGCTGGCCTGTTCGGCTTCTTGAGAGAGACCT
GCCATGCCAAAGCGTAAGTGCTTGGTTCCCAGTTTTCCACTCCATCATCC
TTCAACTCAACCACCCTCCCTCCGATCCCCCTCTACGCATCCTACCCCCA
CCTAGCCTACCGGTCCCGGCTTTCGCGACGGTGATGTCGTGGTTGTCTCT
GCTCTCCGCACACCCCTTTGCAAGGCTAAACGCGGTGCCTTCAAAAGCAC
CACTACTGACGACTTGCTTGCTCCCGTCTTGGCTGCCGTGGTGAAGCAAT
CGGGCATCGACTCTGCTTCCCTCGGAGACATTGTCATTGGTAACGTCTTG
CAGGCGGGTGCTGGGGCTGTTGGAGCAAGGATGGCTCAGTTCTATGCTGG
AATCCCTTATGAGGTGAGGAAGGATGAAGGGAGGGTGGGAGGGAGGAGGG
AAGAAGGCAGATGGGGGTTATCAAGCGTGAACATGGTAATGTAATCTACT
TCCTGAATACTTAGCCGTCGCTCCCTATTATCGTCCCTTCCCAGGTACCT
CTCTGCACCGTGAACCGCCAGTGCTCCTCCGGCCTGCAAGCTTTTTTCCA
AGTCGCCGCCGGCATTCAATCCGGGCTCTACTCCACCGCCATCGCTGGCG
GGGTGGAATCAATGTCCCTCACCGACATGGCATCCTCTGTCCCCGAAATC
AATTTCGACCGGGTCCAGGAATTCAAAAATTCAAAAGACTGCATCATCCC
TATGGGCCAGACAAGCGATGAGGTTGCGTCAAGGTTCAGGGTCACGAGGG
AGGAACAGGACATATTCGCTGCTGCCTCGCACGCCAAGGCAGAGGCGGCG
CAGAAGAGTGGGAAATTTGCGGAGGAGATCGTGCCGATTACAGTGGAGGG
GGGAGAGGGGGAAGGAGTAGTTGTGAAGGAGGACGAGGGGATTCGCCCGG
GGACAACAGCGGAGAAATTGGGAAAATTGAGGTCAAGTTTCACGGAGGGG
GGCTCGACTACGGCAGGGAACAGTAGTCAGATGACTGACGGAGCGGCGGC
GGTGGTGGTAGCGAGTAGGGGCGCAGCAGCAGAGCATGGCTTGCCGGTGT
TGGGCGTCTTGAGGGGGGCGGCGGTTGTAGGTGTGCCTCCGGACATTATG
GGAGTGGGGCCTGCGGTTGCTATTCCTGCGGCGTTAGCACGTGCGGGGTT
GAGCGTCGAGGAGGTGGATGTGTACGAGATTAACGAGGCGTTTGCGAGCC
AGTGCTTGTATTGTGTGCGGGAGTTGGGGATTCCAGTAGAGAAGGTCAAC
CCGAATGGGGGGGCCATTGCGCTTGGTCATCCGTTGGGGGCCACGGGGGC
GAGGCAGATTGCGACGTTGCTGCATGAGATGAGGAGGACGGGAAAGAGGT
ATGGAGTGGTGAGCATGTGCATTGGCACGGGCATGGGGGCGGCGGCCGTG
TTTGAGAATGAGGGTTATAAGGTGCGGAAGTAGAGGAGAGGGGGGGTTGA
AAGGTTGTATGCATGCACAACGTTGCTGGGGGGGAAGGTGATAGAGAAAG
GAGGAGCCTTAGACAATGCTGCTGGAGATGGGCAGGGGACAAGTTGAGAT
GAGGGGGGAAAGCATCTAAACCGTAGGTAGGGTATCTTTGCTGCTGCGGC
TGTTGCTGCTAGTGCTGCAGCTGATGGTGATGCAGATGCTGGTGAGCTTG
CAGATGCAGATGCAGATGCTGCTGCATGTACACATGTCACAGGAAAAGTT
GTTTGTGGCACTCGAAAATAAAAAAGCTATATAAACGTTAAAAGAGGAGG
GCGGACAAGAAGAAGTTAAGACATCGATGAGAGCGAGGAGAGAAGATAGA
AAATTTGTCGCACAAATACGCATAGAGAAAGACGAGTCATAGGACAAATC
AAACTG
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Coding sequence (CDS) from alignment at chr14:350596..353151-

>NO14G01050.1 ID=NO14G01050.1|Name=NO14G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr14:350596..353151- (Nannochloropsis oceanica)
ATGACCGGCGCTCAAACCAACCCTGCCAATCGCCGCCTGGAGCGTCTCGG
AAGCCATCTGACGAAGAAGCCTACCGGTCCCGGCTTTCGCGACGGTGATG
TCGTGGTTGTCTCTGCTCTCCGCACACCCCTTTGCAAGGCTAAACGCGGT
GCCTTCAAAAGCACCACTACTGACGACTTGCTTGCTCCCGTCTTGGCTGC
CGTGGTGAAGCAATCGGGCATCGACTCTGCTTCCCTCGGAGACATTGTCA
TTGGTAACGTCTTGCAGGCGGGTGCTGGGGCTGTTGGAGCAAGGATGGCT
CAGTTCTATGCTGGAATCCCTTATGAGGTACCTCTCTGCACCGTGAACCG
CCAGTGCTCCTCCGGCCTGCAAGCTTTTTTCCAAGTCGCCGCCGGCATTC
AATCCGGGCTCTACTCCACCGCCATCGCTGGCGGGGTGGAATCAATGTCC
CTCACCGACATGGCATCCTCTGTCCCCGAAATCAATTTCGACCGGGTCCA
GGAATTCAAAAATTCAAAAGACTGCATCATCCCTATGGGCCAGACAAGCG
ATGAGGTTGCGTCAAGGTTCAGGGTCACGAGGGAGGAACAGGACATATTC
GCTGCTGCCTCGCACGCCAAGGCAGAGGCGGCGCAGAAGAGTGGGAAATT
TGCGGAGGAGATCGTGCCGATTACAGTGGAGGGGGGAGAGGGGGAAGGAG
TAGTTGTGAAGGAGGACGAGGGGATTCGCCCGGGGACAACAGCGGAGAAA
TTGGGAAAATTGAGGTCAAGTTTCACGGAGGGGGGCTCGACTACGGCAGG
GAACAGTAGTCAGATGACTGACGGAGCGGCGGCGGTGGTGGTAGCGAGTA
GGGGCGCAGCAGCAGAGCATGGCTTGCCGGTGTTGGGCGTCTTGAGGGGG
GCGGCGGTTGTAGGTGTGCCTCCGGACATTATGGGAGTGGGGCCTGCGGT
TGCTATTCCTGCGGCGTTAGCACGTGCGGGGTTGAGCGTCGAGGAGGTGG
ATGTGTACGAGATTAACGAGGCGTTTGCGAGCCAGTGCTTGTATTGTGTG
CGGGAGTTGGGGATTCCAGTAGAGAAGGTCAACCCGAATGGGGGGGCCAT
TGCGCTTGGTCATCCGTTGGGGGCCACGGGGGCGAGGCAGATTGCGACGT
TGCTGCATGAGATGAGGAGGACGGGAAAGAGGTATGGAGTGGTGAGCATG
TGCATTGGCACGGGCATGGGGGCGGCGGCCGTGTTTGAGAATGAGGGTTA
TAAGGTGCGGAAGTAG
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Synonyms
Publications