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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:1011580..1014317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03400.2 vs.
Match: EWM20770.1 (hypothetical protein Naga_100356g3 [Nannochloropsis gaditana]) HSP 1 Score: 92.0 bits (227), Expect = 2.500e-15 Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 0
Query: 98 RSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLLSRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWLGREGT--QRNERMMGSQKERKRVAMTRMEVQV 231
R S +P P I LVLF++ SVV G ++L LR+ L P LL Y+ L KS + T+DD LS SW+LLQAGL TA AVK +L + RGKA+V WL R G +R E + +ER RVAMTRMEV V
Sbjct: 111 RHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLL---RKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQ-TVRGKALVGWLIRRGVGERRGEGELEGGRER-RVAMTRMEVNV 240
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2467bp GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGGTAAGAGAGAAG GATGAGGATGAGGAGGAGAAGGAGGATGAGAAGGAGGGGGAGGAAGAGGA AAATCCAGAGGGAAAGGAGGAGGGTAGGGTGGGGATGGGACATGGGATGA ATTGGACCTGGACTATGCCCAGACTAGACCAGTAAAATGTGCCATCCAAC CAAGCAATCACTCGTTTTTTGCACATCACAACCCTCCGTTTCTGTCCACA GATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGG ACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTT CCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAA GGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCG GTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATT TTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTC CTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTT TTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGACGACGACGCACTTT CCCCCTCATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTG AAGGGCAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGC GTGGTTGGGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTC AAAAGGAGAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAG ATAATGTTATCTAGTAGAAAAGATATCAAATAAAAAAAACGAAAGCGGTG TGACTTAAGTCTTCAAA back to topprotein sequence of NO13G03400.2 >NO13G03400.2-protein ID=NO13G03400.2-protein|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp MCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPYSRTIFALDVLMGLV AGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTYVPVTTNATSSNRSS SFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLL SRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWL GREGTQRNERMMGSQKERKRVAMTRMEVQV* back to topmRNA from alignment at chr13:1011580..1014317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica) GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGGTAAGAGAGAAG
GATGAGGATGAGGAGGAGAAGGAGGATGAGAAGGAGGGGGAGGAAGAGGA
AAATCCAGAGGGAAAGGAGGAGGGTAGGGTGGGGATGGGACATGGGATGA
ATTGGACCTGGACTATGCCCAGACTAGACCAGTAAAATGTGCCATCCAAC
CAAGCAATCACTCGTTTTTTGCACATCACAACCCTCCGTTTCTGTCCACA
GATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG
AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG
GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG
GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGT
ATGGGGAGGGGGGGGGAAGGGAGGGAAGTAGAGAGGGAGAGAGGGACTGT
GGCCTGCATGCTCCCTTCACTTCACTTCCATTCGTTTTCTTGAACCTCGA
CCAAATTCATTGTTTTTCTATCATTACCTTTCTCTCCTCCTGTTTCGTAG
GGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCC
TTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTC
AAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAAT
CGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCA
TTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCC
TCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACC
TTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGA
GGGAGGGAGAGTGAGAGGAAGGCCAATTTTGTCCTTAAAATCGACCTAAA
CCACCCACCCTCCCTCCCTCCCTCCTTCCCTCTTTCCCTTACATTCATCC
TCTAGGACGACGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGC
CTGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCC
GCGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGA
ATGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACG
CGAATGGAGGTGCAGGTGTAGATAATGTTATCTAGTAGAAAAGATATCAA
ATAAAAAAAACGAAAGCGGTGTGACTTAAGTCTTCAAA back to topCoding sequence (CDS) from alignment at chr13:1011580..1014317- >NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica) ATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTG TGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAG TGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTC GCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCC TCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGT ACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCC TCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGT CCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCG CCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTG AGTAGGGGCAAGAGCAAGAGCAGGACGGACGACGACGCACTTTCCCCCTC ATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTGAAGGGCA GAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGCGTGGTTG GGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTCAAAAGGA GAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAG back to top
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