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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:572382..573851 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01990.1 vs.
Match: EWM21863.1 (gtp-binding protein obg [Nannochloropsis gaditana]) HSP 1 Score: 535.8 bits (1379), Expect = 1.400e-148 Identity = 294/482 (61.00%), Postives = 346/482 (71.78%), Query Frame = 0
Query: 1 MDRHHFHGKPGGTGDSKNQRGARGRHTVVRVPCGTIVKEVLRRCANGCNGNYYERVQVCDLDEPLSYYTAATGGKPGLGNSIQAGRVRKTSAASGNFRAPGHQGEERYYELELKTIADVGLVGYPNAGKSTLLGGLSMAQPKVAAYPFTTLHPTVGRVEYTDAASLTVADLPGLIEGAHANKGLGHEFLRHIERTKVLLYVLDGIGGEGRGVAAGVEDGSVVEEAPAHVLRKLKEELELYCPGLSRRPSLVWLNKADLNSDWVQEAKSAVEAVLREDEVEVDARKDAGDVEGVMTRDWKVPPILWGSACTGERIGELAHELRRAVELVALEEENVRGINGPGSNCSGSGSGSDGGSRATKGSGDNGNHYRQQLRHEQQQQQLHLPQMGEIMVAVGTTEETASLQRVEED-AAYAEGMCIAHAYSKALEESQARNTEWISGIQGVSAAVIRARRYAAGLAVTYRQNYWLTDAIHSAMQVQQPK 482
MDRHHFHGK GG+GDS + GARG H VVRVPCGT+VKEVLR G YERVQVCDLD+PLSYY AATGG+PGLGNS+QAGR R +++ASGNFR+PGHQGEER+YELELKTIADVGLVGYPNAGKSTLLGGLS A+P AAY FTTLHPTVGRVEYTDAAS+TVADLPGLIEGAHANKGLGHEFLRHIERTKVL+YVLDG+G EG AGV+DGSVVEEAP V RKLK+ELELYCPGLSRRPSLVWLNKADLN++WV EAK+AV A + D+ D + G E M + +VP +L GSA TGE IGELAHELRR V+ VA E+E +G G G + G G G +R T GS H +Q + +G TT+ S + D AA + + +A AY+KALE +Q N EW++ +Q + + RA+ Y+A L VTYRQ+YWL + +Q +
Sbjct: 312 MDRHHFHGKAGGSGDSNKKHGARGAHAVVRVPCGTVVKEVLR----SGRGGGYERVQVCDLDQPLSYYRAATGGRPGLGNSVQAGRARNSASASGNFRSPGHQGEERFYELELKTIADVGLVGYPNAGKSTLLGGLSRARPAAAAYAFTTLHPTVGRVEYTDAASVTVADLPGLIEGAHANKGLGHEFLRHIERTKVLVYVLDGVGREG---GAGVDDGSVVEEAPVTVFRKLKKELELYCPGLSRRPSLVWLNKADLNAEWVSEAKAAVMADMSGDDATADRPQAWG--ESTMGQRGRVPNVLSGSARTGEGIGELAHELRRVVDRVAQEDEKAQGYGGGGGH--GGGEGGKLWARETGGSD-----------HALPHRQGGIEGVG----GRNTTKSEGSFVTADVDSAADDKTISLAEAYAKALELTQRFNVEWMNAVQCANQNIHRAQCYSAALTVTYRQDYWLAHGMRMMKAGEQTR 767
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA CCGGTGAGCCGACGAAATGA back to topprotein sequence of NO13G01990.1 >NO13G01990.1-protein ID=NO13G01990.1-protein|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MDRHHFHGKPGGTGDSKNQRGARGRHTVVRVPCGTIVKEVLRRCANGCNG NYYERVQVCDLDEPLSYYTAATGGKPGLGNSIQAGRVRKTSAASGNFRAP GHQGEERYYELELKTIADVGLVGYPNAGKSTLLGGLSMAQPKVAAYPFTT LHPTVGRVEYTDAASLTVADLPGLIEGAHANKGLGHEFLRHIERTKVLLY VLDGIGGEGRGVAAGVEDGSVVEEAPAHVLRKLKEELELYCPGLSRRPSL VWLNKADLNSDWVQEAKSAVEAVLREDEVEVDARKDAGDVEGVMTRDWKV PPILWGSACTGERIGELAHELRRAVELVALEEENVRGINGPGSNCSGSGS GSDGGSRATKGSGDNGNHYRQQLRHEQQQQQLHLPQMGEIMVAVGTTEET ASLQRVEEDAAYAEGMCIAHAYSKALEESQARNTEWISGIQGVSAAVIRA RRYAAGLAVTYRQNYWLTDAIHSAMQVQQPKGGTGEPTK* back to topmRNA from alignment at chr13:572382..573851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr13:572382..573851- (Nannochloropsis oceanica) ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA
GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG
GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC
AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA
TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG
CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC
GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC
CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG
GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG
CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC
AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT
TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT
GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA
GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA
AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG
GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA
ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC
GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA
CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT
AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA
ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT
GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA
TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC
TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT
GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG
CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA
CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT
CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT
CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA
CCGGTGAGCCGACGAAATGA back to topCoding sequence (CDS) from alignment at chr13:572382..573851- >NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr13:572382..573851- (Nannochloropsis oceanica) ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA CCGGTGAGCCGACGAAATGA back to top
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