NO13G00930.1, NO13G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00930.1
Unique NameNO13G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1541
Alignment locationchr13:300219..301982 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:300219..301982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00930.1 vs.
Match: EWM21760.1 (TB2/DP1/HVA22-related protein [Nannochloropsis gaditana])

HSP 1 Score: 402.9 bits (1034), Expect = 1.200e-108
Identity = 227/391 (58.06%), Postives = 278/391 (71.10%), Query Frame = 0 
Query:   14 TAGGDHGPTLVQKLVLLKDNMLKMVDLKMEKHPALTLRPQLLELEKKTNVPAPALFIIGSSLSVLILVLILSMEGVALAAGFTYPLLGSLKAIKMSEPVVMKFFIKYFLLYSLLNLSDTYLPIFPSLPLYYIFKTLFLLWAFNPKTQGANIIYTALRPFLLPRLGIAIRAATAEASGQGGQHLKKSKKGEKAGGELVTAMVGTEGISATTATSGSNSSSSSSSGGESPTITLRIELAARGLEMPAEPERLDTLCQLRILPAGLKRGGGGGGGAGGAGKDKAERKPALDEGQWYKSRLHTSQPQDAPDWRNDPQFLRVPTLDDNVLEVLVVNKMSWKDQPLGRVRLPLKGLTFPVDTTLPLEAPHKAELAEEGAGGDDGEEGGMQGELEIHL 405
            ++GG  G T +Q+L ++KDN+LK V+ +ME++P+LT+R  LL++EKK NVPAPALFI+GSS  VL+LVL++SMEGVAL  G  YPLLG+LKAIK+ E  V+KFFI+YFLL++ LNL +T+LP+   LPLYY+ K LFL WAFNPKTQGA ++Y  LRP LLP LGIA+ A+ AE S  GG        G K GG       G E        +G     +    GE  +I LRIELAARGLE PAEPERLDTLCQLRILP                G     R+ ALDEGQWYKSR++T+ PQDAPDWR+DPQFLRVPT +DNVLEVL+VNKMSW+D PLGRVRLPL+GL+FP++TTLPLE P   E  E   GG++ E G +QGELEIHL
Sbjct:    2 SSGGAQGQTPMQRLTIMKDNVLKKVERQMEQYPSLTMRSSLLDMEKKVNVPAPALFILGSSSLVLLLVLLVSMEGVALLVGLAYPLLGALKAIKVQEAHVIKFFIQYFLLFNALNLLETFLPL-SRLPLYYLGKLLFLAWAFNPKTQGARLVYGTLRPLLLPHLGIALGASGAEQSRPGG-------GGRKRGG-------GRE-------NTGEGRFGARDGSGEGASIHLRIELAARGLEKPAEPERLDTLCQLRILPM--------------TGGHSEVRRAALDEGQWYKSRINTAPPQDAPDWRHDPQFLRVPTTEDNVLEVLIVNKMSWRDHPLGRVRLPLRGLSFPIETTLPLEDPFGDEREE---GGEENERGEVQGELEIHL 353
The following BLAST results are available for this feature:
BLAST of NO13G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21760.11.200e-10858.06TB2/DP1/HVA22-related protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00930NO13G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00930.1NO13G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00930.1.cds1NO13G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00930.1.cds2NO13G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00930.1 ID=NO13G00930.1|Name=NO13G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
AGATCACCCGAAAACTTTTCGAAGCAAGCATCATGGCGAGGCCCCAGGCC
GGCAGCAGCAGCAGCAGCAGCACTGCCGGCGGCGACCACGGTCCAACGCT
CGTGCAAAAGCTCGTGTTGCTCAAAGACAATATGCTGAAAATGGTCGATC
TCAAAATGGAGAAGCATCCTGCGCTGACCCTCCGTCCTCAGTTGCTTGAG
CTTGAAAAAAAGACCAACGTGCCTGCCCCTGCCCTCTTCATTATTGGGAG
CTCCCTGTCGGTTCTAATACTTGTCCTCATTCTCAGCATGGAAGGTGTCG
CCCTCGCCGCGGGGTTCACCTACCCCCTCCTGGGCTCCCTTAAAGCCATC
AAGATGTCTGAGCCCGTGGTCATGAAATTCTTCATTAAATACTTCCTTCT
CTACTCCCTCCTCAACCTCTCCGACACCTACCTCCCCATCTTTCCCTCCT
TACCCCTCTACTACATCTTCAAGACCCTCTTCCTCCTCTGGGCCTTCAAC
CCGAAGACACAAGGCGCCAACATCATCTACACCGCCCTACGCCCCTTTCT
CCTTCCACGCCTCGGCATCGCCATACGAGCCGCGACTGCTGAAGCCTCCG
GGCAAGGAGGACAACATCTCAAAAAGAGCAAAAAGGGCGAGAAGGCCGGA
GGGGAGCTAGTGACGGCTATGGTCGGGACCGAGGGGATCAGTGCCACTAC
CGCCACCAGTGGCAGCAATAGCAGCAGCAGCAGCAGCAGTGGTGGGGAGA
GTCCGACAATTACATTGCGGATTGAGCTCGCTGCACGGGGACTGGAAATG
CCTGCAGAACCCGAGCGTCTCGATACCCTGTGTCAGCTTCGCATCTTGCC
GGCGGGACTAAAAAGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGCAG
GTAAAGACAAAGCGGAAAGGAAACCGGCGTTGGACGAGGGCCAGTGGTAC
AAGTCGCGTTTACACACCTCCCAGCCTCAAGACGCGCCTGATTGGAGGAA
TGATCCTCAATTCTTACGAGTGCCGACCCTCGATGACAATGTTTTGGAGG
TTTTGGTCGTGAACAAGATGAGCTGGAAAGATCAACCGTTGGGGAGGGTG
AGACTGCCGTTAAAAGGGTTAACGTTTCCCGTGGACACGACGTTGCCCCT
GGAGGCCCCTCATAAGGCGGAGCTGGCGGAAGAAGGAGCCGGGGGGGATG
ATGGGGAGGAAGGGGGGATGCAGGGGGAGTTGGAGATTCACTTGGAGTTG
GCCTAGAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTAGGCAC
CGAAGGCAACAACGACAACTTAATACAACCGAATGTCTTTTCTTGGGGCT
GGTCTAGGAGGGAGAGGTTGATGGATGGATGGAGCGAGGAGGAGGAGGGG
GAGGGTGAGGAAGGGTGCGTCGGTGTGAGTGCACGAAGTCAGAAAGACAT
GAAAGAGTGTCAGTGGAGAGAGCGTTGTGGGAGTTTCCGTCAGAAGGCAA
GTCGAAAAAAAGATAATTGTTTGAAACAAAATATGCGCTCA
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protein sequence of NO13G00930.1

>NO13G00930.1-protein ID=NO13G00930.1-protein|Name=NO13G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MARPQAGSSSSSSTAGGDHGPTLVQKLVLLKDNMLKMVDLKMEKHPALTL
RPQLLELEKKTNVPAPALFIIGSSLSVLILVLILSMEGVALAAGFTYPLL
GSLKAIKMSEPVVMKFFIKYFLLYSLLNLSDTYLPIFPSLPLYYIFKTLF
LLWAFNPKTQGANIIYTALRPFLLPRLGIAIRAATAEASGQGGQHLKKSK
KGEKAGGELVTAMVGTEGISATTATSGSNSSSSSSSGGESPTITLRIELA
ARGLEMPAEPERLDTLCQLRILPAGLKRGGGGGGGAGGAGKDKAERKPAL
DEGQWYKSRLHTSQPQDAPDWRNDPQFLRVPTLDDNVLEVLVVNKMSWKD
QPLGRVRLPLKGLTFPVDTTLPLEAPHKAELAEEGAGGDDGEEGGMQGEL
EIHLELA*
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mRNA from alignment at chr13:300219..301982+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00930.1 ID=NO13G00930.1|Name=NO13G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at chr13:300219..301982+ (Nannochloropsis oceanica)
AGATCACCCGAAAACTTTTCGAAGCAAGCATCATGGCGAGGCCCCAGGCC
GGCAGCAGCAGCAGCAGCAGCACTGCCGGCGGCGACCACGGTCCAACGCT
CGTGCAAAAGCTCGTGTTGCTCAAAGACAATATGCTGAAAATGGTCGATC
TCAAAATGGAGAAGCATCCTGCGCTGACCCTCCGTCCTCAGTTGCTTGAG
CTTGAAAAAAAGACCAACGTGCCTGCCCCTGCCCTCTTCATTATTGGGAG
CTCCCTGTCGGTTCTAATACTTGTCCTCATTCTCAGCATGGAAGGTGTCG
CGTAAGTGAATGGGCATGCTATTGAATGATTTTTATGTGTCTGTATCTAT
CTGGCTGCGCGCCTCGAGACTATGAGGATATGGAACATAATCACGCTTCG
TTACATCCAGTCCCCTTTTTTTAATGAAGCTGCTGCTTTCTCGACTACGA
ACTACTTCATAAGTACTGCCTAAGTCTCCATGCTTTGGTACTTACTGCCT
ACCCATAATCCAAACAACCAACAGCCTCGCCGCGGGGTTCACCTACCCCC
TCCTGGGCTCCCTTAAAGCCATCAAGATGTCTGAGCCCGTGGTCATGAAA
TTCTTCATTAAATACTTCCTTCTCTACTCCCTCCTCAACCTCTCCGACAC
CTACCTCCCCATCTTTCCCTCCTTACCCCTCTACTACATCTTCAAGACCC
TCTTCCTCCTCTGGGCCTTCAACCCGAAGACACAAGGCGCCAACATCATC
TACACCGCCCTACGCCCCTTTCTCCTTCCACGCCTCGGCATCGCCATACG
AGCCGCGACTGCTGAAGCCTCCGGGCAAGGAGGACAACATCTCAAAAAGA
GCAAAAAGGGCGAGAAGGCCGGAGGGGAGCTAGTGACGGCTATGGTCGGG
ACCGAGGGGATCAGTGCCACTACCGCCACCAGTGGCAGCAATAGCAGCAG
CAGCAGCAGCAGTGGTGGGGAGAGTCCGACAATTACATTGCGGATTGAGC
TCGCTGCACGGGGACTGGAAATGCCTGCAGAACCCGAGCGTCTCGATACC
CTGTGTCAGCTTCGCATCTTGCCGGCGGGACTAAAAAGAGGAGGAGGAGG
AGGAGGAGGAGCAGGAGGAGCAGGTAAAGACAAAGCGGAAAGGAAACCGG
CGTTGGACGAGGGCCAGTGGTACAAGTCGCGTTTACACACCTCCCAGCCT
CAAGACGCGCCTGATTGGAGGAATGATCCTCAATTCTTACGAGTGCCGAC
CCTCGATGACAATGTTTTGGAGGTTTTGGTCGTGAACAAGATGAGCTGGA
AAGATCAACCGTTGGGGAGGGTGAGACTGCCGTTAAAAGGGTTAACGTTT
CCCGTGGACACGACGTTGCCCCTGGAGGCCCCTCATAAGGCGGAGCTGGC
GGAAGAAGGAGCCGGGGGGGATGATGGGGAGGAAGGGGGGATGCAGGGGG
AGTTGGAGATTCACTTGGAGTTGGCCTAGAGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGTAGGCACCGAAGGCAACAACGACAACTTAATACA
ACCGAATGTCTTTTCTTGGGGCTGGTCTAGGAGGGAGAGGTTGATGGATG
GATGGAGCGAGGAGGAGGAGGGGGAGGGTGAGGAAGGGTGCGTCGGTGTG
AGTGCACGAAGTCAGAAAGACATGAAAGAGTGTCAGTGGAGAGAGCGTTG
TGGGAGTTTCCGTCAGAAGGCAAGTCGAAAAAAAGATAATTGTTTGAAAC
AAAATATGCGCTCA
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Coding sequence (CDS) from alignment at chr13:300219..301982+

>NO13G00930.1 ID=NO13G00930.1|Name=NO13G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr13:300219..301982+ (Nannochloropsis oceanica)
ATGGCGAGGCCCCAGGCCGGCAGCAGCAGCAGCAGCAGCACTGCCGGCGG
CGACCACGGTCCAACGCTCGTGCAAAAGCTCGTGTTGCTCAAAGACAATA
TGCTGAAAATGGTCGATCTCAAAATGGAGAAGCATCCTGCGCTGACCCTC
CGTCCTCAGTTGCTTGAGCTTGAAAAAAAGACCAACGTGCCTGCCCCTGC
CCTCTTCATTATTGGGAGCTCCCTGTCGGTTCTAATACTTGTCCTCATTC
TCAGCATGGAAGGTGTCGCCCTCGCCGCGGGGTTCACCTACCCCCTCCTG
GGCTCCCTTAAAGCCATCAAGATGTCTGAGCCCGTGGTCATGAAATTCTT
CATTAAATACTTCCTTCTCTACTCCCTCCTCAACCTCTCCGACACCTACC
TCCCCATCTTTCCCTCCTTACCCCTCTACTACATCTTCAAGACCCTCTTC
CTCCTCTGGGCCTTCAACCCGAAGACACAAGGCGCCAACATCATCTACAC
CGCCCTACGCCCCTTTCTCCTTCCACGCCTCGGCATCGCCATACGAGCCG
CGACTGCTGAAGCCTCCGGGCAAGGAGGACAACATCTCAAAAAGAGCAAA
AAGGGCGAGAAGGCCGGAGGGGAGCTAGTGACGGCTATGGTCGGGACCGA
GGGGATCAGTGCCACTACCGCCACCAGTGGCAGCAATAGCAGCAGCAGCA
GCAGCAGTGGTGGGGAGAGTCCGACAATTACATTGCGGATTGAGCTCGCT
GCACGGGGACTGGAAATGCCTGCAGAACCCGAGCGTCTCGATACCCTGTG
TCAGCTTCGCATCTTGCCGGCGGGACTAAAAAGAGGAGGAGGAGGAGGAG
GAGGAGCAGGAGGAGCAGGTAAAGACAAAGCGGAAAGGAAACCGGCGTTG
GACGAGGGCCAGTGGTACAAGTCGCGTTTACACACCTCCCAGCCTCAAGA
CGCGCCTGATTGGAGGAATGATCCTCAATTCTTACGAGTGCCGACCCTCG
ATGACAATGTTTTGGAGGTTTTGGTCGTGAACAAGATGAGCTGGAAAGAT
CAACCGTTGGGGAGGGTGAGACTGCCGTTAAAAGGGTTAACGTTTCCCGT
GGACACGACGTTGCCCCTGGAGGCCCCTCATAAGGCGGAGCTGGCGGAAG
AAGGAGCCGGGGGGGATGATGGGGAGGAAGGGGGGATGCAGGGGGAGTTG
GAGATTCACTTGGAGTTGGCCTAG
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Synonyms
Publications