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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:100804..103221 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00280.1 vs.
Match: XP_005854660.1 (ubiquitin thioesterase otub1 [Nannochloropsis gaditana CCMP526]; EKU21705.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana CCMP526]; EWM22878.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana]; EWM22879.1 ubiquitin thioesterase otub1 [Nannochloropsis gaditana]) HSP 1 Score: 371.7 bits (953), Expect = 2.500e-99 Identity = 191/290 (65.86%), Postives = 223/290 (76.90%), Query Frame = 0
Query: 79 AVDAESNGHDDLHPAMLNQQDDAAVAEQDRLTMAQQEEIESQIAATQPLVGALEPPSVLLPDYKDNPAKGFVAGVEDLAQRYRMMRRVRGDGNCFYRAFLFAYLAGLVEGGV----------GEGGK-----KKKEWDKLAKTVKDSKGWLVEVGFEEVAIDMFWEVFVEELEELPQKTLADLEATFNDPHGVASYMVWYCRLLTAGFLKKHREEYEAFLDGRYTDMNDFCAREVEPVGKECEELQIVALMRVLDAQVHIEYLDGRPLPDGGHLPVHVLPE--GGGREGG 352
A D NG A N Q + ++D LT+AQQEEI+SQIAA+QPLVG LEPPS+LL YKDNP KGFV GVEDLA+RY MRR+R DGNCFYRAFLFAYLAGLVE G+ G GGK +KKEW++ ++TVKDSK WL+ VG+EEVAID+FWEVFVEELE LP K+L+DLE+TFN+PHGVASYMVWYCRLLT+G+LKKH+EEYEAFLD Y DM+DFC REVEP GKECE++QI+AL+R L V IEYLDGR LP GG LP HVLP+ GG+E G
Sbjct: 13 AEDVHENGLSQSQAAGHNHQVEE---DRDLLTIAQQEEIDSQIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRDGNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERFSQTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPHGVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKECEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEG 299
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp GTATGGGGAGGATCTTGCTCGACCTGGCGGCAGGGCTAGAAAGCCTCGTC CTTGATTTTCTTGCTAACGTCATGAGACACACATAAAGGTGGCTGATGTT GCCGTTCGCGGGTGGACATTAAAAGGAGACGGGAAGCACGCAACACAAAA AAGGCGTGCGGTAAAAATCATGCGTGAGGTGTCACAGACGTGAGTTCTTG CAGCCCCATGAATTGCGGCTCATTAAAAATGTACCATGCCACGAAATACT CTTCTTTCAGGCGTGGCTTTCCTCTCATTGCAACCAAGCCATGTCCGTGT CTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTTGAGCTTGATG TTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATTATTCTTCCTT TAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAATAAGCACATAG AAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCCTCAATCCACC AGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGAGCAATGGCCA CGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGACGCTGCCGTGG CGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGATAGAAAGTCAA ATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCACCATCCGTCTT GCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTAGCGGGCGTGG AGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCGCGGGGATGGG AACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTGGGCTGGTGGA GGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGGGATAAGCTGG CCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGTGGGGTTTGAG GAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAGAGCTGGAAGA GCTTCCCCAAAAGACACTCGCCGATCTGGAGGCGACATTTAACGACCCTC ACGGCGTGGCATCTTACATGGTCTGGTACTGCCGTCTCTTGACCGCAGGC TTTCTGAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGGATGGCCGCTA CACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCCGTAGGGAAGG AGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTTGGACGCCCAG GTCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATGGAGGGCATTT GCCTGTGCATGTCCTGCCGGAGGGAGGGGGGAGGGAGGGGGGGAGGGAGG GGGGGTAACGCTGTTGTACCGCCCAGGACATTATGACGTGTTGTCGGCGT GAGAAGACCGAGTGGGGACCGCGGGCTTGTCCCGAGTCGAAGCCGAGGTA GGAGGGGGCTAAGATGTGTGTGTAGAGAGGGGGGGGATGATTATGACGAG ACGATGCGCAGGCGTAGACAGAGGAGTACAGGCGGAGCATGTGATAAAGG CATGCAGTGCCCCCAGCAAATCCCCCGCCGGGCCGTGAACAAATCCGTGG TAATAGAGGAAGCACCAAAGCATAAGCACCTTCGATTCGATACTGA back to topprotein sequence of NO13G00280.1 >NO13G00280.1-protein ID=NO13G00280.1-protein|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp MSVSSCLRGACASVSCLSLMFNAARVAHRRSGHYSSFRNALTTSIPHTLN KHIENSGRAASMGGEVPQSTRPTTTPSTAVDAESNGHDDLHPAMLNQQDD AAVAEQDRLTMAQQEEIESQIAATQPLVGALEPPSVLLPDYKDNPAKGFV AGVEDLAQRYRMMRRVRGDGNCFYRAFLFAYLAGLVEGGVGEGGKKKKEW DKLAKTVKDSKGWLVEVGFEEVAIDMFWEVFVEELEELPQKTLADLEATF NDPHGVASYMVWYCRLLTAGFLKKHREEYEAFLDGRYTDMNDFCAREVEP VGKECEELQIVALMRVLDAQVHIEYLDGRPLPDGGHLPVHVLPEGGGREG GREGG* back to topmRNA from alignment at chr13:100804..103221- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at chr13:100804..103221- (Nannochloropsis oceanica) GTATGGGGAGGATCTTGCTCGACCTGGCGGCAGGGCTAGAAAGCCTCGTC
CTTGATTTTCTTGCTAACGTCATGAGACACACATAAAGGTGGCTGATGTT
GCCGTTCGCGGGTGGACATTAAAAGGAGACGGGAAGCACGCAACACAAAA
AAGGCGTGCGGTAAAAATCATGCGTGAGGTGTCACAGACGTGAGTTCTTG
CAGCCCCATGAATTGCGGCTCATTAAAAATGTACCATGCCACGAAATACT
CTTCTTTCAGGCGTGGCTTTCCTCTCATTGCAACCAAGCCATGTCCGTGT
CTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTTGAGCTTGATG
TTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATTATTCTTCCTT
TAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAATAAGCACATAG
AAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCCTCAATCCACC
AGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGAGCAATGGCCA
CGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGACGCTGCCGTGG
CGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGATAGAAAGTCAA
ATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCACCATCCGTCTT
GCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTAGCGGGCGTGG
AGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCGCGGGGATGGG
AACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTGGGCTGGTGGA
GGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGGGATAAGCTGG
CCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGTGGGGTTTGAG
GAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAGAGGTAAGATG
GGGAAAGGAGTTTGAAACTCCCAACCAATAAGCAACCCACCACCCACTCA
CACACGGGTATACCCCTCCCCTCGTTCCTCCCCACTCCCTCCCTCCTCTC
CTCCCTCCTCCTCTCCCTCCTTCCACCCCTCCTTCAGCTGGAAGAGCTTC
CCCAAAAGACACTCGCCGATCTGGAGGCGACATTTAACGACCCTCACGGC
GTGGCATCTTACATGGTCTGGTACTGCCGTCTCTTGACCGCAGGCTTTCT
GAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGGATGGCCGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAAGAGCAAGGCATATCACCG
GTTCTCAGAAGCGTCGACTTGGTGAGAGGTAGAGAGAGACTGAAGAGGGT
AGGTGTACGACGTAAGGAGAGGATGTGAGCCAATTGCGTTACCGTGTACA
AGCTCTTACCACTTTAGACACCTACCTCTCTGTCTCTCTCTGTCTCTCTC
TATCTGTCTGTCTCTTTCTCTGTCTCTGTCCCTCTTTTATCTCCCTCTCT
CTGTCTATCTCTGTCCCTCTTTTTATCTTCCTCTCTGTCTCTCCCTGTCT
CTCCCTGTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTATGTCTTTGTCT
CTGTCTCTCTTTTTATCTCCCTCTCTCTGTCTCTCTTTTAATCTCCCTCT
CTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTTTTTATCT
CTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTTTTC
ATCTCTCTCTCTTTTCATCTCTCTCTCATTTTCTCATCTCTCTCTCTCTT
CATCTCCCTCTTCCTCTCTCTCTCTGTCTCTGTCTCTATCTCTCTCTCTT
CCTCACTCTCTCTTCACAGCTACACCGACATGAACGACTTCTGCGCCCGG
GAAGTAGAGCCCGTAGGGAAGGAGTGCGAGGAACTGCAGATAGTGGCCTT
GATGCGCGTTTTGGACGCCCAGGTCCATATCGAATACCTGGACGGGAGGC
CTCTGCCGGATGGAGGGCATTTGCCTGTGCATGTCCTGCCGGAGGGAGGG
GGGAGGGAGGGGGGGAGGGAGGGGGGGTAACGCTGTTGTACCGCCCAGGA
CATTATGACGTGTTGTCGGCGTGAGAAGACCGAGTGGGGACCGCGGGCTT
GTCCCGAGTCGAAGCCGAGGTAGGAGGGGGCTAAGATGTGTGTGTAGAGA
GGGGGGGGATGATTATGACGAGACGATGCGCAGGCGTAGACAGAGGAGTA
CAGGCGGAGCATGTGATAAAGGCATGCAGTGCCCCCAGCAAATCCCCCGC
CGGGCCGTGAACAAATCCGTGGTAATAGAGGAAGCACCAAAGCATAAGCA
CCTTCGATTCGATACTGA back to topCoding sequence (CDS) from alignment at chr13:100804..103221- >NO13G00280.1 ID=NO13G00280.1|Name=NO13G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr13:100804..103221- (Nannochloropsis oceanica) ATGTCCGTGTCTAGCTGTCTTCGTGGTGCATGCGCGAGTGTTTCATGCTT GAGCTTGATGTTCAACGCCGCGAGAGTCGCCCATCGTCGCTCTGGGCATT ATTCTTCCTTTAGAAATGCCCTAACTACCTCAATCCCGCACACACTAAAT AAGCACATAGAAAACAGTGGTAGAGCAGCCAGCATGGGTGGAGAGGTTCC TCAATCCACCAGGCCGACTACCACGCCCAGCACTGCCGTCGACGCCGAGA GCAATGGCCACGACGATCTTCACCCTGCCATGCTTAATCAACAGGATGAC GCTGCCGTGGCGGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGAT AGAAAGTCAAATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCAC CATCCGTCTTGCTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTA GCGGGCGTGGAGGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCG CGGGGATGGGAACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTG GGCTGGTGGAGGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGG GATAAGCTGGCCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGT GGGGTTTGAGGAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAG AGCTGGAAGAGCTTCCCCAAAAGACACTCGCCGATCTGGAGGCGACATTT AACGACCCTCACGGCGTGGCATCTTACATGGTCTGGTACTGCCGTCTCTT GACCGCAGGCTTTCTGAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGG ATGGCCGCTACACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCC GTAGGGAAGGAGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTT GGACGCCCAGGTCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATG GAGGGCATTTGCCTGTGCATGTCCTGCCGGAGGGAGGGGGGAGGGAGGGG GGGAGGGAGGGGGGGTAA back to top
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