NO12G03330.1, NO12G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03330.1
Unique NameNO12G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr12:914309..916883 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:914309..916883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03330.1 vs.
Match: EWM25708.1 (nucleosome chromatin assembly complex protein [Nannochloropsis gaditana])

HSP 1 Score: 441.8 bits (1135), Expect = 2.500e-120
Identity = 237/372 (63.71%), Postives = 293/372 (78.76%), Query Frame = 0 
Query:   84 DKNNTEAKEASPFANTTFSFTAPQGGASAPFPNLAGFSQALASAAEGAREED-DEPLAPEVQVRIDYLKNLQEQRDEFMKAFHEERKALVKKYEALSAPLLDKRRAILSGDVDVEKK-----EEAWETIAKEGGEGGDVKEAGVPHFWLQAMVNSRLLRGMIEEDDVPALKFLTDIQCADKEDGTGFQLDFHFA-PNPYFTNAVLSKSYVVPNLMEDEDAMLESTEGTTINWTSTKKNLCVEEKRMKPKGKSRGGVVLKQVKKDSFFHWFTAVNIPESPEGVDEEEYEELMEQLDLDYAVASTLREEIVPEAIKWYLGEGDDEESEDGDY--EEESSEESESDPESSDDEPPPQPAGGRYPRQAGRPRRGGR 447
            D+ + + + ASPFANTTFSFTAPQGG + PFP+L+GF QALA AA+GA EE+ +E +APEVQVRI+YLK LQ++R+EFM AFHEERKALVKKY  L+APLL KR A+L G +DV+++     E+  E  A EG EG      G+P+FWL+ +++ RL+ GM++E+DV ALK+L D++C DKEDG GF L FHFA PNPYFTN VLSK+Y VPNLM+D +A+L++  GT I+W S K+NLC+EEKRMKPKGKSRGGVV+KQ+KK+SFF+WF AV+IPE PE V+EEEYEELM +LD DYAVAS LREEIVPEAIKWYLGEG+++ESE  D   E E  +E ES  ESSDD+ P  P   R PRQ GRPRRGGR
Sbjct:    3 DEASKKPEGASPFANTTFSFTAPQGGVTGPFPSLSGFQQALADAAQGAAEEEGEEEVAPEVQVRIEYLKKLQQEREEFMDAFHEERKALVKKYALLTAPLLSKREALLKGAIDVKEEDGQVVEKPVEAAAGEGEEGETSLPKGIPNFWLRTLMSHRLIAGMVQEEDVGALKYLRDVECVDKEDGAGFSLHFHFAQPNPYFTNPVLSKAYEVPNLMDDGEAILQACAGTAIHWVSPKQNLCMEEKRMKPKGKSRGGVVVKQIKKESFFNWFEAVDIPEDPEDVEEEEYEELMGKLDYDYAVASILREEIVPEAIKWYLGEGEEDESEYADSVGESEEDDEDESVTESSDDDEPSPPQ--RRPRQPGRPRRGGR 372
The following BLAST results are available for this feature:
BLAST of NO12G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25708.12.500e-12063.71nucleosome chromatin assembly complex protein [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03330NO12G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03330.1NO12G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03330.1.cds1NO12G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03330.1.cds2NO12G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03330.1.cds3NO12G03330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03330.1.cds4NO12G03330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03330.1 ID=NO12G03330.1|Name=NO12G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
ATAATTTATCGCATCTCTAAATTATGCTTTTTGGCTGTGTTGGTCATTTT
CCTTCTCCAGTGCTTATCAAATGCGAGGACACTAATTCGACTCCATGGAA
GGGGTTCTGGTGGGGAGGTTGGTCGTGGAAACCAAGAAAAGACCATACAA
CACACGATAACGAAGCAACAGGCAGAGGCCTTGAACATTTATCAAGCTTA
AAAGGTCATGCACATTGTCCATACGACTTGAAAGGGATAAAATTTTGGGC
ATGAATTTAGAGTACAAGTATGAGCTGTGGCTCAACGGGTGGTGGCCACA
CCCTTTCCACGGAATCAGAACATACAACCCCAGCATCACCACGAGCATTG
GAAGCAGCACGATTGTCGGAAGGCTCGCGAAAATTGGCAATGCGGACCAA
GCAAGTTTCTTGGCTTCCCACTCTCCAACGCTCTCTTATCGAACAACATT
TAAGCTACACCATACACCCCACAACGCGCGCGACACAGGCAGCCACTCAA
AAAATAACCATGGCTGACGACAAGAATAACACGGAGGCGAAAGAGGCGAG
TCCCTTTGCCAACACCACCTTCTCCTTTACGGCCCCTCAAGGTGGGGCCT
CTGCCCCTTTCCCCAATTTGGCCGGATTCAGCCAGGCCTTGGCTTCGGCA
GCAGAGGGTGCACGGGAGGAGGATGACGAGCCGCTTGCGCCCGAAGTACA
GGTCCGTATTGACTACCTGAAGAACTTGCAAGAGCAACGTGACGAGTTCA
TGAAGGCCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCG
CTTTCTGCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGGGGGATGT
CGACGTGGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCG
GCGAGGGAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAG
GCCATGGTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGGATGACGT
GCCGGCACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAAGAGGATG
GGACAGGCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTACTTTACG
AATGCGGTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGGAGGATGA
AGACGCCATGTTGGAGTCTACTGAAGGGACGACAATCAATTGGACGTCAA
CCAAGAAGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAG
AGCCGTGGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCA
TTGGTTTACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTGGACGAGG
AGGAGTATGAGGAGTTGATGGAACAGCTTGACCTAGACTATGCCGTCGCC
TCTACGCTACGTGAGGAAATCGTGCCGGAGGCCATCAAGTGGTACCTCGG
GGAGGGAGATGATGAAGAGAGCGAGGATGGTGATTACGAGGAGGAGAGTT
CTGAGGAGAGTGAAAGCGACCCGGAAAGCAGTGACGACGAGCCGCCGCCG
CAGCCGGCCGGAGGACGGTATCCTCGTCAGGCGGGGCGGCCGCGGCGTGG
TGGGCGTTAGAACGCTTGTGGAAGCTGTGACAGCGGAGGATAGGGGAGAA
ATACATTTAGCTTTGAAACAATCAAGATTTGTTTTTACACTCGCATGCGA
GGCGGCCACAAGTACAGCAGCAGAAGCATCAGCCAAAAAAAAAACAAGCA
GAGGGAAGGGGGAAAAGAGAAGGATAAAGAAAGGGAATGGGCAGGGCAGA
GATGTAGATGGCCAAGGCCAAAGAAAAATTGCGATTATATTCTCAATCAT
CATCTACTAGAAGAAAGAATTACACCATTGGTCGACATCTTATTCTTGAC
TATATCTGTATTTGAATTCCCGTTCAAATCGCCGTTGCCCCAACGCATCT
TCGCGAATTCGTTTGCACTCAAGAAGACAATAATCACGGTGCACGGTCCA
CGGGGGGGTTCTCACTCTTGTGTATGCGCTCGTCTATTTCTTTGTACTTT
CGCCCTTAGCAAGCTGGTTTTGAAAGCAGTCGTTTGTCTGTTTAATGCTC
ACAATACAACTCCCCCATGCTTGCTTCTTTCTCCACCTCCACCTAACG
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protein sequence of NO12G03330.1

>NO12G03330.1-protein ID=NO12G03330.1-protein|Name=NO12G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MSCGSTGGGHTLSTESEHTTPASPRALEAARLSEGSRKLAMRTKQVSWLP
TLQRSLIEQHLSYTIHPTTRATQAATQKITMADDKNNTEAKEASPFANTT
FSFTAPQGGASAPFPNLAGFSQALASAAEGAREEDDEPLAPEVQVRIDYL
KNLQEQRDEFMKAFHEERKALVKKYEALSAPLLDKRRAILSGDVDVEKKE
EAWETIAKEGGEGGDVKEAGVPHFWLQAMVNSRLLRGMIEEDDVPALKFL
TDIQCADKEDGTGFQLDFHFAPNPYFTNAVLSKSYVVPNLMEDEDAMLES
TEGTTINWTSTKKNLCVEEKRMKPKGKSRGGVVLKQVKKDSFFHWFTAVN
IPESPEGVDEEEYEELMEQLDLDYAVASTLREEIVPEAIKWYLGEGDDEE
SEDGDYEEESSEESESDPESSDDEPPPQPAGGRYPRQAGRPRRGGR*
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mRNA from alignment at chr12:914309..916883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03330.1 ID=NO12G03330.1|Name=NO12G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2575bp|location=Sequence derived from alignment at chr12:914309..916883- (Nannochloropsis oceanica)
ATAATTTATCGCATCTCTAAATTATGCTTTTTGGCTGTGTTGGTCATTTT
CCTTCTCCAGTGCTTATCAAATGCGAGGACACTAATTCGACTCCATGGAA
GGGGTTCTGGTGGGGAGGTTGGTCGTGGAAACCAAGAAAAGACCATACAA
CACACGATAACGAAGCAACAGGCAGAGGCCTTGAACATTTATCAAGCTTA
AAAGGTCATGCACATTGTCCATACGACTTGAAAGGGATAAAATTTTGGGC
ATGAATTTAGAGTACAAGTATGAGCTGTGGCTCAACGGGTGGTGGCCACA
CCCTTTCCACGGAATCAGAACATACAACCCCAGCATCACCACGAGCATTG
GAAGCAGCACGATTGTCGGAAGGCTCGCGAAAATTGGCAATGCGGACCAA
GCAAGTTTCTTGGCTTCCCACTCTCCAACGCTCTCTTATCGAACAACATT
TAAGCTACACCATACACCCCACAACGCGCGCGACACAGGCAGCCACTCAA
AAAATAACCATGGCTGACGACAAGAATAACACGGAGGCGAAAGAGGCGAG
TCCCTTTGCCAACACCACCTTCTCCTTTACGGCCCCTCAAGGTGGGGCCT
CTGCCCCTTTCCCCAATTTGGCCGGATTCAGCCAGGCCTTGGCTTCGGCA
GCAGAGGGTGCACGGGAGGAGGATGACGAGCCGCTTGCGCCCGAAGTACA
GGTTAGAAAAAAATAGCCTCGGTGGTGGTATGTACAGACGGCTGGCAAGT
GTAGCGTTTATGCAGGAGTACGGGGACGGCTTCGGAATCACTGATCTTCA
CGTCATGTCTCTCGTCACATTTGTGTTTTAATCGCTCACTCACCACATTC
CATCTACCGCACACATCAAACCCTTCCGTTTTTATTTTTTTTAAGGTCCG
TATTGACTACCTGAAGAACTTGCAAGAGCAACGTGACGAGTTCATGAAGG
CCTTCCACGAGGAACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTTCT
GCCCCCTTGCTCGACAAACGCCGCGCCATCCTGTCGGGGGATGTCGACGT
GGAGAAGAAGGAGGAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGAGG
GAGGCGACGTAAAGGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCATG
GTGAACAGTCGCTTGTTGCGAGGCATGATCGAGGAGGATGACGTGCCGGC
ACTTAAATTTTTGACAGACATTCAGTGTGCGGATAAAGAGGATGGGACAG
GCTTTCAGTTGGATTTCCACTTCGCCCCTAACCCTTACTTTACGAATGCG
GTATTGTCCAAGAGTTATGTCGTGCCCAACCTAATGGAGGATGAAGACGC
CATGTTGGAGTCTACTGAAGGGACGACAATCAATTGGACGTCAACCAAGA
AGAATCTTTGTGTGGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCCGT
GGAGGTGTGGTGCTCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGGTT
TACGGCAGTTAATATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGAGT
ATGAGGAGTTGATGGAACAGGTGCGAGTGGGGAGGGGAGGAAGGGAGGAT
GTAAAGGGATAATTTTGTATAGTGAAATGCTCACTTTTTCTTTTTTTCCC
CAACCACCAGCTTGACCTAGACTATGCCGTCGCCTCTACGCTACGTGAGG
AAATCGTGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGGAGATGATGAA
GAGAGCGAGGATGGTGATTACGAGGAGGAGAGTTCTGAGGAGAGTGAAAG
CGACCCGGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCGGTACGTGGAT
GGCGAGGAAATTGAGTGGGAAAGGGAGGAAGGGGTGGGGGTATGAGGATG
GAGAGAGAGGGAAGACGACTCTTCGAGGGCTAAATAGTACTATTGCACTT
CAATTCTACATCTCGATACTAACATATCAACAGGCCGGAGGACGGTATCC
TCGTCAGGCGGGGCGGCCGCGGCGTGGTGGGCGTTAGAACGCTTGTGGAA
GCTGTGACAGCGGAGGATAGGGGAGAAATACATTTAGCTTTGAAACAATC
AAGATTTGTTTTTACACTCGCATGCGAGGCGGCCACAAGTACAGCAGCAG
AAGCATCAGCCAAAAAAAAAACAAGCAGAGGGAAGGGGGAAAAGAGAAGG
ATAAAGAAAGGGAATGGGCAGGGCAGAGATGTAGATGGCCAAGGCCAAAG
AAAAATTGCGATTATATTCTCAATCATCATCTACTAGAAGAAAGAATTAC
ACCATTGGTCGACATCTTATTCTTGACTATATCTGTATTTGAATTCCCGT
TCAAATCGCCGTTGCCCCAACGCATCTTCGCGAATTCGTTTGCACTCAAG
AAGACAATAATCACGGTGCACGGTCCACGGGGGGGTTCTCACTCTTGTGT
ATGCGCTCGTCTATTTCTTTGTACTTTCGCCCTTAGCAAGCTGGTTTTGA
AAGCAGTCGTTTGTCTGTTTAATGCTCACAATACAACTCCCCCATGCTTG
CTTCTTTCTCCACCTCCACCTAACG
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Coding sequence (CDS) from alignment at chr12:914309..916883-

>NO12G03330.1 ID=NO12G03330.1|Name=NO12G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr12:914309..916883- (Nannochloropsis oceanica)
ATGAGCTGTGGCTCAACGGGTGGTGGCCACACCCTTTCCACGGAATCAGA
ACATACAACCCCAGCATCACCACGAGCATTGGAAGCAGCACGATTGTCGG
AAGGCTCGCGAAAATTGGCAATGCGGACCAAGCAAGTTTCTTGGCTTCCC
ACTCTCCAACGCTCTCTTATCGAACAACATTTAAGCTACACCATACACCC
CACAACGCGCGCGACACAGGCAGCCACTCAAAAAATAACCATGGCTGACG
ACAAGAATAACACGGAGGCGAAAGAGGCGAGTCCCTTTGCCAACACCACC
TTCTCCTTTACGGCCCCTCAAGGTGGGGCCTCTGCCCCTTTCCCCAATTT
GGCCGGATTCAGCCAGGCCTTGGCTTCGGCAGCAGAGGGTGCACGGGAGG
AGGATGACGAGCCGCTTGCGCCCGAAGTACAGGTCCGTATTGACTACCTG
AAGAACTTGCAAGAGCAACGTGACGAGTTCATGAAGGCCTTCCACGAGGA
ACGGAAAGCCCTGGTAAAGAAATATGAGGCGCTTTCTGCCCCCTTGCTCG
ACAAACGCCGCGCCATCCTGTCGGGGGATGTCGACGTGGAGAAGAAGGAG
GAGGCCTGGGAGACGATTGCGAAGGAAGGCGGCGAGGGAGGCGACGTAAA
GGAGGCGGGAGTTCCTCATTTTTGGTTGCAGGCCATGGTGAACAGTCGCT
TGTTGCGAGGCATGATCGAGGAGGATGACGTGCCGGCACTTAAATTTTTG
ACAGACATTCAGTGTGCGGATAAAGAGGATGGGACAGGCTTTCAGTTGGA
TTTCCACTTCGCCCCTAACCCTTACTTTACGAATGCGGTATTGTCCAAGA
GTTATGTCGTGCCCAACCTAATGGAGGATGAAGACGCCATGTTGGAGTCT
ACTGAAGGGACGACAATCAATTGGACGTCAACCAAGAAGAATCTTTGTGT
GGAGGAGAAGAGGATGAAACCCAAAGGGAAGAGCCGTGGAGGTGTGGTGC
TCAAGCAGGTGAAGAAGGATAGTTTTTTCCATTGGTTTACGGCAGTTAAT
ATACCCGAGAGCCCGGAAGGGGTGGACGAGGAGGAGTATGAGGAGTTGAT
GGAACAGCTTGACCTAGACTATGCCGTCGCCTCTACGCTACGTGAGGAAA
TCGTGCCGGAGGCCATCAAGTGGTACCTCGGGGAGGGAGATGATGAAGAG
AGCGAGGATGGTGATTACGAGGAGGAGAGTTCTGAGGAGAGTGAAAGCGA
CCCGGAAAGCAGTGACGACGAGCCGCCGCCGCAGCCGGCCGGAGGACGGT
ATCCTCGTCAGGCGGGGCGGCCGCGGCGTGGTGGGCGTTAG
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Synonyms
Publications