NO12G02720.1, NO12G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02720.1
Unique NameNO12G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr12:762357..763052 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:762357..763052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02720.1 vs.
Match: EWM25767.1 (hypothetical protein Naga_100168g5 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 2.700e-17
Identity = 62/163 (38.04%), Postives = 87/163 (53.37%), Query Frame = 0 
Query:   55 PQEPVQAPFGEEVQTSPHRNDQVAPPTNTVSLATPADDLNPPTPAEAAIPAVPAAPDVVVSPVSPTEIPLTPRQPVETNDTMVLKAAALLMVDVNPVEGKAIGWRVVHADKQSFAAGITYYLQIELRTKSRCEIHEKKVFVEANTGNLIPGGLGDLLPCDPSL 218
            P +PV AP            D  AP T  V+         P   A++   +      +  S    + IP +PR+ ++  D +V ++A L M DVNPV G+AIGW++V AD Q F +G  Y LQ+ELRTK+RCE HE  VF +A +  L   G GD++PC+ SL
Sbjct:   42 PSKPVLAPL-----------DNAAPETENVA--------TPTASAQSGARSSDPPEHIASSGPISSAIPRSPRESIDIGDPIVQESAMLAMTDVNPVVGEAIGWQIVRADTQKFTSGTYYLLQVELRTKTRCEAHEVTVFQDARSQILEKQGSGDIVPCNASL 185
The following BLAST results are available for this feature:
BLAST of NO12G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25767.12.700e-1738.04hypothetical protein Naga_100168g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02720NO12G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02720.1NO12G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02720.1.cds1NO12G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02720.1 ID=NO12G02720.1|Name=NO12G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGCCACGACAACGGCAAGCCCTCCTGCTGACAGTGCTTTTATATGTGCT
TGTCTGGGTAGGGGCCGGTGTCTTGGAGTCTGCGGCTGGAGCATCATCAG
CGCAGGAGGAGCAGCACCAGGATCCGCCGCCAGCTCCCTTACAGCAGGAG
CAGCCGCCGCCGCCGCAAGAGCCAGTACAAGCACCATTCGGAGAGGAAGT
ACAAACGTCCCCACATAGAAATGACCAAGTAGCACCACCAACTAACACAG
TATCCCTCGCTACTCCTGCCGATGACTTAAACCCCCCCACTCCTGCAGAA
GCGGCTATCCCCGCTGTCCCCGCCGCTCCCGATGTAGTGGTGTCCCCCGT
TTCTCCCACCGAAATCCCGCTTACTCCTCGGCAGCCGGTCGAAACCAATG
ATACCATGGTGCTGAAAGCAGCCGCACTCTTAATGGTGGACGTGAACCCG
GTGGAAGGAAAGGCGATTGGTTGGCGTGTTGTGCATGCCGACAAGCAAAG
CTTTGCAGCAGGCATCACTTACTATTTGCAGATTGAGCTACGGACTAAAT
CCCGCTGTGAGATACACGAGAAGAAGGTTTTTGTCGAGGCTAACACGGGG
AATCTTATTCCAGGAGGATTGGGAGACCTGTTGCCTTGCGATCCGTCCTT
ACCGCCCGCCGATTATTTGACTAAAAAAGGGTTGAGGGGAGGGTGA
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protein sequence of NO12G02720.1

>NO12G02720.1-protein ID=NO12G02720.1-protein|Name=NO12G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPRQRQALLLTVLLYVLVWVGAGVLESAAGASSAQEEQHQDPPPAPLQQE
QPPPPQEPVQAPFGEEVQTSPHRNDQVAPPTNTVSLATPADDLNPPTPAE
AAIPAVPAAPDVVVSPVSPTEIPLTPRQPVETNDTMVLKAAALLMVDVNP
VEGKAIGWRVVHADKQSFAAGITYYLQIELRTKSRCEIHEKKVFVEANTG
NLIPGGLGDLLPCDPSLPPADYLTKKGLRGG*
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mRNA from alignment at chr12:762357..763052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02720.1 ID=NO12G02720.1|Name=NO12G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp|location=Sequence derived from alignment at chr12:762357..763052- (Nannochloropsis oceanica)
ATGCCACGACAACGGCAAGCCCTCCTGCTGACAGTGCTTTTATATGTGCT
TGTCTGGGTAGGGGCCGGTGTCTTGGAGTCTGCGGCTGGAGCATCATCAG
CGCAGGAGGAGCAGCACCAGGATCCGCCGCCAGCTCCCTTACAGCAGGAG
CAGCCGCCGCCGCCGCAAGAGCCAGTACAAGCACCATTCGGAGAGGAAGT
ACAAACGTCCCCACATAGAAATGACCAAGTAGCACCACCAACTAACACAG
TATCCCTCGCTACTCCTGCCGATGACTTAAACCCCCCCACTCCTGCAGAA
GCGGCTATCCCCGCTGTCCCCGCCGCTCCCGATGTAGTGGTGTCCCCCGT
TTCTCCCACCGAAATCCCGCTTACTCCTCGGCAGCCGGTCGAAACCAATG
ATACCATGGTGCTGAAAGCAGCCGCACTCTTAATGGTGGACGTGAACCCG
GTGGAAGGAAAGGCGATTGGTTGGCGTGTTGTGCATGCCGACAAGCAAAG
CTTTGCAGCAGGCATCACTTACTATTTGCAGATTGAGCTACGGACTAAAT
CCCGCTGTGAGATACACGAGAAGAAGGTTTTTGTCGAGGCTAACACGGGG
AATCTTATTCCAGGAGGATTGGGAGACCTGTTGCCTTGCGATCCGTCCTT
ACCGCCCGCCGATTATTTGACTAAAAAAGGGTTGAGGGGAGGGTGA
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Coding sequence (CDS) from alignment at chr12:762357..763052-

>NO12G02720.1 ID=NO12G02720.1|Name=NO12G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr12:762357..763052- (Nannochloropsis oceanica)
ATGCCACGACAACGGCAAGCCCTCCTGCTGACAGTGCTTTTATATGTGCT
TGTCTGGGTAGGGGCCGGTGTCTTGGAGTCTGCGGCTGGAGCATCATCAG
CGCAGGAGGAGCAGCACCAGGATCCGCCGCCAGCTCCCTTACAGCAGGAG
CAGCCGCCGCCGCCGCAAGAGCCAGTACAAGCACCATTCGGAGAGGAAGT
ACAAACGTCCCCACATAGAAATGACCAAGTAGCACCACCAACTAACACAG
TATCCCTCGCTACTCCTGCCGATGACTTAAACCCCCCCACTCCTGCAGAA
GCGGCTATCCCCGCTGTCCCCGCCGCTCCCGATGTAGTGGTGTCCCCCGT
TTCTCCCACCGAAATCCCGCTTACTCCTCGGCAGCCGGTCGAAACCAATG
ATACCATGGTGCTGAAAGCAGCCGCACTCTTAATGGTGGACGTGAACCCG
GTGGAAGGAAAGGCGATTGGTTGGCGTGTTGTGCATGCCGACAAGCAAAG
CTTTGCAGCAGGCATCACTTACTATTTGCAGATTGAGCTACGGACTAAAT
CCCGCTGTGAGATACACGAGAAGAAGGTTTTTGTCGAGGCTAACACGGGG
AATCTTATTCCAGGAGGATTGGGAGACCTGTTGCCTTGCGATCCGTCCTT
ACCGCCCGCCGATTATTTGACTAAAAAAGGGTTGAGGGGAGGGTGA
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Synonyms
Publications