NO12G01970.1, NO12G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01970.1
Unique NameNO12G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr12:558749..560231 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:558749..560231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01970.1 vs.
Match: EWM25802.1 (hypothetical protein Naga_100021g51 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 5.000e-44
Identity = 136/335 (40.60%), Postives = 192/335 (57.31%), Query Frame = 0 
Query:    6 ISSFLSPCNNPPGGGAVCGPLVSGANRIEG--KPQNHPGKASSFSSSSASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRRSTIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRG----ELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEAM-GDLRADVIFEQGMVFLVADVATATEHRDGMTEGETAAASVLQTLEQGVADVMHDRGY 334
            +S+FL P +  P  GA  GP   G +R  G  K    P  +SS     A +  +   +    +  D + + ++  L  ++    + +  A  +   +S   P      T+   L  ++ L   L RK R+ K RL+ELLAA+ GGLLSSSCCAVQ++LN+ S+GCAGFA LD  RP F+ LTFS+L YKT+ YD++ +K+  RS P+WLVAV L   P ++R+LNRG    EL+M S +L       +P  V+L+Y+V GMKCEACANGLK AL+A+  D+RA V +E+G+VFL+            M +G        + LEQGVA VM +RGY
Sbjct:    9 VSTFL-PSSKYPRVGATGGP---GTDRPLGVHKGNEIPEVSSSLLYVPALNSKIEFNARCYKSLTDLSDVEMDLALCNQIVPFPRGSSVARRNRLWQSFTMPAPGIATTILVGLMGLLFL---LCRKGRIRKARLLELLAASAGGLLSSSCCAVQVLLNTFSIGCAGFAALDHLRPFFISLTFSTLIYKTIVYDLRTYKQLWRSSPSWLVAVILTMFPTIMRKLNRGMGLRELTMLSGSLPCENKAASP-TVILQYKVEGMKCEACANGLKLALQALQSDVRARVFYEKGIVFLIR-----------MQKGADPDVETARDLEQGVAQVMKERGY 324
The following BLAST results are available for this feature:
BLAST of NO12G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25802.15.000e-4440.60hypothetical protein Naga_100021g51 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01970NO12G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01970.1NO12G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01970.1.cds1NO12G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01970.1.cds2NO12G01970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGTCTGGCTTTGGAATCGAC
GCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCACCATGCAGGCAGTGC
TGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGCGGGCCACAAGAGCG
ACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCT
ACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGA
CCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTC
AACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCG
ACCGCTTTTTTTATTCTTGACCTTCTCAAGCCTAGCTTACAAGACGGTGA
CATACGACATCCAACTGCACAAGAAACCCTTGCGCAGTCTGCCTACTTGG
CTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAA
TCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGCTTCTTCTTTGCACG
GAACCACACCACGGCCTGTAATGCTTCGATATAGGGTGCGAGGCATGAAG
TGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTGGAGGCCATGGGGGA
TTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAG
ATGTAGCAACAGCAACAGAGCACCGCGATGGGATGACAGAAGGAGAGACA
GCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGCGTTGCGGATGTGAT
GCATGACAGAGGGTACAGCTACCACAGCCTGTAGCCGCGTCGAGCCTCGT
GATATCCGCCGCTGTACGTAGAAAAGAATTCGGCACTGTATGAAAATGTA
ATATCTGTAAGACATGCACATAGCTTTGTATAGGGTCGAGTATATAAAAT
GAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAATCAAAAAGAAAGGAC
ACCTTCTTGAAAATTGATGACACGATTAAGGAGTATCATTTTCAAGACAG
GGAGTATGGTGACATTTCA
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protein sequence of NO12G01970.1

>NO12G01970.1-protein ID=NO12G01970.1-protein|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTGPRISSFLSPCNNPPGGGAVCGPLVSGANRIEGKPQNHPGKASSFSSS
SASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRR
STIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLL
SSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQL
HKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRP
VMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFEQGMVFLVADVATAT
EHRDGMTEGETAAASVLQTLEQGVADVMHDRGYSYHSL*
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mRNA from alignment at chr12:558749..560231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at chr12:558749..560231+ (Nannochloropsis oceanica)
ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGGTAAATTTTCTGTAGCAA
GCCTCGGTCGTGCCCGTGTTGGGACGGTCCTTACACCGAAGGGTGTGTTA
AAAGTAGGGCTGCAACGACGGCGCTACGTATTGCCGGATGAGCGGAACAT
TTTTGTCCCTTGTTACATCTGCCTGTACGGCTGTCTTGTTGCGCAGTGAT
GGGGTCGTACTTACCACTTGTTTGCTTTCCCCGATATTATCCGCAGTCTG
GCTTTGGAATCGACGCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCAC
CATGCAGGCAGTGCTGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGC
GGGCCACAAGAGCGACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTG
GCTGTGGTCTTGCTACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGA
GTTGCTCGCGGCGACCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCG
TCCAATTGGTCCTCAACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTT
TTGGACCGTTTTCGACCGCTTTTTTTATTCTTGACCTTCTCAAGCCTAGC
TTACAAGACGGTGACATACGACATCCAACTGCACAAGAAACCCTTGCGCA
GTCTGCCTACTTGGCTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTG
GTGCGTCGCCTTAATCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGC
TTCTTCTTTGCACGGAACCACACCACGGCCTGTAATGCTTCGATATAGGG
TGCGAGGCATGAAGTGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTG
GAGGCCATGGGGGATTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGT
TTTTCTCGTGGCAGATGTAGCAACAGCAACAGAGCACCGCGATGGGATGA
CAGAAGGAGAGACAGCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGC
GTTGCGGATGTGATGCATGACAGAGGGTACAGCTACCACAGCCTGTAGCC
GCGTCGAGCCTCGTGATATCCGCCGCTGTACGTAGAAAAGAATTCGGCAC
TGTATGAAAATGTAATATCTGTAAGACATGCACATAGCTTTGTATAGGGT
CGAGTATATAAAATGAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAAT
CAAAAAGAAAGGACACCTTCTTGAAAATTGATGACACGATTAAGGAGTAT
CATTTTCAAGACAGGGAGTATGGTGACATTTCA
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Coding sequence (CDS) from alignment at chr12:558749..560231+

>NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr12:558749..560231+ (Nannochloropsis oceanica)
ATGACTGGGCCTCGCATCAGCAGCTTCTTGTCTCCTTGTAACAATCCGCC
AGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTCAGGTGCTAACCGTATCG
AAGGGAAGCCTCAGAATCACCCCGGCAAGGCATCTTCTTTCTCCTCCTCA
TCTGCCTCTTCTTGTGGCCTGATCTCGGAATCCCTGCTCACATCCGCAGA
GCTCGACAGCACAAGTCTGGCTTTGGAATCGACGCTAAAGGGAAAACTGG
CCCGTCAAGGGCAAAGCACCATGCAGGCAGTGCTGTCGAGTCGGCGGCGT
TCTACCATTCCACCTACGCGGGCCACAAGAGCGACAGTGGCCACAGCCTT
GGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCTACGGAAGAGTCGGGTGG
GCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGACCGTTGGAGGTCTCCTT
TCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTCAACTCCATCTCCGTGGG
CTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCGACCGCTTTTTTTATTCT
TGACCTTCTCAAGCCTAGCTTACAAGACGGTGACATACGACATCCAACTG
CACAAGAAACCCTTGCGCAGTCTGCCTACTTGGCTTGTGGCCGTGGCCTT
GGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAATCGTGGGGAGTTGAGCA
TGGGGAGCTTCAATTTGGCTTCTTCTTTGCACGGAACCACACCACGGCCT
GTAATGCTTCGATATAGGGTGCGAGGCATGAAGTGTGAAGCATGTGCGAA
TGGACTGAAGAATGCGCTGGAGGCCATGGGGGATTTGCGAGCAGACGTGA
TTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAGATGTAGCAACAGCAACA
GAGCACCGCGATGGGATGACAGAAGGAGAGACAGCCGCGGCGAGTGTATT
GCAGACGTTGGAGCAGGGCGTTGCGGATGTGATGCATGACAGAGGGTACA
GCTACCACAGCCTGTAG
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Synonyms
Publications