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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:553790..555778 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01950.1 vs.
Match: XP_005856098.1 (hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]; EKU20234.1 hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]; EWM25795.1 trna-dihydrouridine synthase a [Nannochloropsis gaditana]) HSP 1 Score: 609.0 bits (1569), Expect = 1.200e-170 Identity = 307/449 (68.37%), Postives = 353/449 (78.62%), Query Frame = 0
Query: 4 GRSPRRRRRRAPFLIIV------IMLAAVT-------SGLAFVQQQARLPAKLRKLTIGKRMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH 440
G P+ +R R+P LI++ +A +T S AFVQ R+ R S S+ RG G E G DER+SLAPMMEYTDRH RF LRLLSKRMVLYTEMITAPTLY N++SRDRFL+FN+PAEHPVVLQLGGSDP L+EASR+A PY Y+A+NLNCGCPSERVSG+GCFGAALMREPERVA++CTAM EGS+G+IP+TVKCRIGVDD+DSYEQLA FV VS ASPVRHF+VHARKAILGGLSPDQNR+VPPLKYPFVYRL +EFPHLRFTLNGGVLSYEDV HL+EGVHGVM+GRA++ARPFYWSD+DAR++G+ NPGLTR E+L +YGAYA+EE+ R G R+RRLL KPVH+LFAGEPMGKRFRA LDQALL+P+L VRQVLE ATAV+P ALLEV PGS +IPAPE VRH
Sbjct: 3 GSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRM------------SRSVARTMTSSSTRGR--GASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH 437
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC ACTGACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGT CCTCTACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACA GCCGAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTG CTACAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGAT TGCTCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGA GTGAGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAG CCTGAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGG AAGAATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATA GCTATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCG GTCAGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAG TCCTGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATC GTTTGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTG TTGTCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGT GATGGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTG ATGCACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGG GAAATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGA GGGAGGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCG CGGGGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTA CTTGACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGT GCTGCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGG CACCGGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATT GAAGTAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAA AAAGAAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAA AGAGAGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGG CCCTCCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTC GCTTGGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTA GCCACGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAG TGAGACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGC AAAGTACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAA GACGCAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA back to topprotein sequence of NO12G01950.1 >NO12G01950.1-protein ID=NO12G01950.1-protein|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT DRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVL QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH* back to topmRNA from alignment at chr12:553790..555778+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at chr12:553790..555778+ (Nannochloropsis oceanica) AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGGTATGAAGGTAATATGTGGGCGCATTTTGCTCAAGACATACG
GGAGGTAATTGTTTGGCGTGTATGCCCCACGACGGCAGTCGAAGGAATGA
GGAACTCCCTCTAGTCATCGTGCTCACGTCCCTACCGCTCCCAATTTTCG
ACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCTC
TACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCCG
AGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTAC
AACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGCT
CTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTGA
GCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCTG
AACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAGA
ATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCTA
TGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTCA
GGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCCT
GATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTTT
GTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTGT
CTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGATG
GTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATGC
ACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAAA
TCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGGA
GGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGGG
GGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTTG
ACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCTG
CCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCACC
GGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATTGAAG
TAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAAAAAG
AAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAAAGAG
AGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGGCCCT
CCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTCGCTT
GGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTAGCCA
CGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAGTGAG
ACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGCAAAG
TACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAAGACG
CAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA back to topCoding sequence (CDS) from alignment at chr12:553790..555778+ >NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr12:553790..555778+ (Nannochloropsis oceanica) ATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTTCCT AATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTGTAC AGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGGAAG CGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCGAAT GGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCGGTC CCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTACACT GACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCT CTACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCC GAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTA CAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGC TCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTG AGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCT GAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAG AATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCT ATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTC AGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCC TGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTT TGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTG TCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGAT GGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATG CACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAA ATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGG AGGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGG GGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTT GACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCT GCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCAC CGGAGACAGTTCGGCATTAG back to top
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