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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:540638..542620 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01880.1 vs.
Match: EWM25799.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana]) HSP 1 Score: 776.5 bits (2004), Expect = 6.100e-221 Identity = 383/505 (75.84%), Postives = 430/505 (85.15%), Query Frame = 0
Query: 1 MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGFG-SKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAELGFSRHELWMMLRSFPAVLDLSVEEDIRPVVRFLRDEVGLKDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRAKRRAS 505
+P A AF+G SR H RSVA+ +AGWMS AGYD+G+G ++ D D+ A L V+++L +RGL GV QV+RKT P DLA RW+GWRRSCDCLLSLGFSAQNVT+ILQ S AFLHELDPEADIRRVVFYLWEDLGF WGKIG GL SWQRHK+KVVT AP+VLRRKPEGGVE+TVATLEQVGMPTKY+LDASFRFPSLLNVPPSLIF VSAYLSSTDVGF+PRDLG LYRRNPWLLHPRTVEQLRPVVAFL+E L VQR+HVVLRGYPQVVL+SV+ DLQPRVVLLQSLGIP QIGCMVEAFPLLLSLPLEEQMLPVL+FFQAELGFSRHELW MLRSFPAVLDLS+EE+IRPVV FLRD+VGL D+K F+KRLPPV+GYPVDWELRKKW LFQELGL + D A FPG+ SYSLHDRLIPRL+FCR+QGV +DVV LRV MAGGDAAFAKEF+GV+PE Y++F+L+YK R K+ R A+TRA R ++
Sbjct: 91 VPGAHAFSGPTPSRSSTLGSHHHP----RSVALESTIAGWMSVAGYDQGYGDNRENDRDERASLYALVMDELAHRRGLSVSGVRQVIRKTKPQDLAARWRGWRRSCDCLLSLGFSAQNVTSILQGSSAFLHELDPEADIRRVVFYLWEDLGFNSWGKIGLGLGSWQRHKYKVVTTAPEVLRRKPEGGVEETVATLEQVGMPTKYILDASFRFPSLLNVPPSLIFCVSAYLSSTDVGFRPRDLGALYRRNPWLLHPRTVEQLRPVVAFLREELQVQRMHVVLRGYPQVVLKSVNADLQPRVVLLQSLGIPSQQIGCMVEAFPLLLSLPLEEQMLPVLFFFQAELGFSRHELWTMLRSFPAVLDLSIEENIRPVVSFLRDDVGLPDVKEFIKRLPPVLGYPVDWELRKKWALFQELGLDASDFAGFPGFVSYSLHDRLIPRLDFCRRQGVLAQDVVALRVVMAGGDAAFAKEFIGVDPEAYEEFLLDYKVRRKEARAAQTRADRESA 591
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTTAGTAGTA GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATA GTAGCGTTCACGGTTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAG TGGTCCAGCACCTGCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGA TGACACAGAAGAAGAAAGAATGCAAACCGAGGTAATGACTCATTAA back to topprotein sequence of NO12G01880.1 >NO12G01880.1-protein ID=NO12G01880.1-protein|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGF GSKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKG WRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLG FEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMP TKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPW LLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVV LLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAELGFSRHELW MMLRSFPAVLDLSVEEDIRPVVRFLRDEVGLKDLKAFVKRLPPVMGYPVD WELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTE DVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRAK RRASGGGGVGGDGRKTRELEEDEEFFPPEAVSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSVVVVVVVVVVVVVFTNGSDSNSSVHGSQERAGNRCMMK WSSTCLVQVIGQRDRNDDTEEERMQTEVMTH* back to topmRNA from alignment at chr12:540638..542620- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr12:540638..542620- (Nannochloropsis oceanica) ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG
CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG
GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT
GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT
GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC
AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA
TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA
TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC
CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT
TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA
TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG
AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT
ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT
CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG
TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG
TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT
GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC
CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG
TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA
GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG
TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG
ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA
TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT
TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT
TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG
TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC
GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG
GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC
CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG
AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG
CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG
GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTGTGCGATT
GAGGCTTGAGGCGGAGCGATTGAGGCGTGAGGCGGAAGGATGGAGTTGAA
AGCAGAAGTCTGAGGGGTGGATGTGTTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATAGTAGCGTTCACGG
TTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAGTGGTCCAGCACCT
GCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGATGACACAGAAGAA
GAAAGAATGCAAACCGAGGTAATGACTCATTAA back to topCoding sequence (CDS) from alignment at chr12:540638..542620- >NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr12:540638..542620- (Nannochloropsis oceanica) ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTTAGTAGTA GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATA GTAGCGTTCACGGTTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAG TGGTCCAGCACCTGCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGA TGACACAGAAGAAGAAAGAATGCAAACCGAGGTAATGACTCATTAA back to top
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