NO12G01530.1, NO12G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01530.1
Unique NameNO12G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1296
Alignment locationchr12:468051..469478 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:468051..469478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01530NO12G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01530.1NO12G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01530.1.cds1NO12G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01530.1.cds2NO12G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01530.1 ID=NO12G01530.1|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGCAACTGCCATGCA
GCTCTCCATCGTCCTTAGGATCCATCTTCCCTCACACACTTTGGCCTCCT
CCTCCACCTTCTTTTCCTCCCCTTCCTCTTCTTCTTTCTCCTTTTCCACC
TTTTATAACTCCTGGCTGTCCAAAATCCGGCAACAAACCTACTATTCCCG
TACGCGGCTTTTAGAAATTCTCATCACATATTACTGGGTGAAAATTACGG
CTAAGGACGCCCTCGTCTTCTTATCCTTTCTCGGTCTTTTCATACAATGC
TGTCTTGTGATTGGAGGGGTGATGTTAGCGTTGGTGCGGAGAACTAAGGA
AGAGACCGAGGAGAACAAATCGCCTCATGGACAGGAAACGTGCACGTCAT
TGGCATCCTTCTTCTATTCTCCACTTACCCTTGCCTCGCAAAAATGCACC
GCGCTCACAACACATCCACGACGCGTCAGCAGCAACAACAGCAGCAGCAG
CAACTACAGTCACAATAGACATCAACCTCCCTCCCTCACCGCCATCTCTA
GCAACAAGAAGAGGGAAAGTAATATTACTGTTAGCAAACTCGCAGGAGAC
TCCTCGTCATTCCTCTTCCTTGATGTACCGTTTTCGAGTCAATGGCAATG
CGTGACGCACGATTGTCGGGCGGCGCCCACCCTTCTGCAAGACAGAGATT
TAGACGCCGTGGCTGCTGCTGGTGGCTCTGGTAGAAAATTAAAGGGGAGG
CACCATCAGGTGATTCCAACACCGAAGGAGGTAATGGCACGGCTATTTGC
CGACGATCGAAAGGTTAAAGGTATGGTGTTGTCGGCCAAGTCTTGA
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protein sequence of NO12G01530.1

>NO12G01530.1-protein ID=NO12G01530.1-protein|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MQNRVLPAALARLAASTTSATLLLVPASFLLLLLLQFFLPIVAADSTLFP
PLPLLNQNVLVQVSLLLSPSPTPIHPIPLDIRFTCASTSAAFTLNSTYTL
TSLFTSSLAHVDALSSKQKQAQPAWTFAADRHQLQTLQPCWVTAHTIDTP
RQRLGSKVVYPPATAMQLSIVLRIHLPSHTLASSSTFFSSPSSSSFSFST
FYNSWLSKIRQQTYYSRTRLLEILITYYWVKITAKDALVFLSFLGLFIQC
CLVIGGVMLALVRRTKEETEENKSPHGQETCTSLASFFYSPLTLASQKCT
ALTTHPRRVSSNNSSSSNYSHNRHQPPSLTAISSNKKRESNITVSKLAGD
SSSFLFLDVPFSSQWQCVTHDCRAAPTLLQDRDLDAVAAAGGSGRKLKGR
HHQVIPTPKEVMARLFADDRKVKGMVLSAKS*
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mRNA from alignment at chr12:468051..469478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01530.1 ID=NO12G01530.1|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at chr12:468051..469478+ (Nannochloropsis oceanica)
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGGTATGAAGCTACA
CAGAGGGAAATACGCATATGCTTGATGGCAGGAAGGAAGAGGACCCATCA
GCTGTCGTTTGTCTAACCCCCTCCCTTCCTCACATTTTCCCTTCCATTCC
CACCACGCACACACAACAGCAACTGCCATGCAGCTCTCCATCGTCCTTAG
GATCCATCTTCCCTCACACACTTTGGCCTCCTCCTCCACCTTCTTTTCCT
CCCCTTCCTCTTCTTCTTTCTCCTTTTCCACCTTTTATAACTCCTGGCTG
TCCAAAATCCGGCAACAAACCTACTATTCCCGTACGCGGCTTTTAGAAAT
TCTCATCACATATTACTGGGTGAAAATTACGGCTAAGGACGCCCTCGTCT
TCTTATCCTTTCTCGGTCTTTTCATACAATGCTGTCTTGTGATTGGAGGG
GTGATGTTAGCGTTGGTGCGGAGAACTAAGGAAGAGACCGAGGAGAACAA
ATCGCCTCATGGACAGGAAACGTGCACGTCATTGGCATCCTTCTTCTATT
CTCCACTTACCCTTGCCTCGCAAAAATGCACCGCGCTCACAACACATCCA
CGACGCGTCAGCAGCAACAACAGCAGCAGCAGCAACTACAGTCACAATAG
ACATCAACCTCCCTCCCTCACCGCCATCTCTAGCAACAAGAAGAGGGAAA
GTAATATTACTGTTAGCAAACTCGCAGGAGACTCCTCGTCATTCCTCTTC
CTTGATGTACCGTTTTCGAGTCAATGGCAATGCGTGACGCACGATTGTCG
GGCGGCGCCCACCCTTCTGCAAGACAGAGATTTAGACGCCGTGGCTGCTG
CTGGTGGCTCTGGTAGAAAATTAAAGGGGAGGCACCATCAGGTGATTCCA
ACACCGAAGGAGGTAATGGCACGGCTATTTGCCGACGATCGAAAGGTTAA
AGGTATGGTGTTGTCGGCCAAGTCTTGA
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Coding sequence (CDS) from alignment at chr12:468051..469478+

>NO12G01530.1 ID=NO12G01530.1|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr12:468051..469478+ (Nannochloropsis oceanica)
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGCAACTGCCATGCA
GCTCTCCATCGTCCTTAGGATCCATCTTCCCTCACACACTTTGGCCTCCT
CCTCCACCTTCTTTTCCTCCCCTTCCTCTTCTTCTTTCTCCTTTTCCACC
TTTTATAACTCCTGGCTGTCCAAAATCCGGCAACAAACCTACTATTCCCG
TACGCGGCTTTTAGAAATTCTCATCACATATTACTGGGTGAAAATTACGG
CTAAGGACGCCCTCGTCTTCTTATCCTTTCTCGGTCTTTTCATACAATGC
TGTCTTGTGATTGGAGGGGTGATGTTAGCGTTGGTGCGGAGAACTAAGGA
AGAGACCGAGGAGAACAAATCGCCTCATGGACAGGAAACGTGCACGTCAT
TGGCATCCTTCTTCTATTCTCCACTTACCCTTGCCTCGCAAAAATGCACC
GCGCTCACAACACATCCACGACGCGTCAGCAGCAACAACAGCAGCAGCAG
CAACTACAGTCACAATAGACATCAACCTCCCTCCCTCACCGCCATCTCTA
GCAACAAGAAGAGGGAAAGTAATATTACTGTTAGCAAACTCGCAGGAGAC
TCCTCGTCATTCCTCTTCCTTGATGTACCGTTTTCGAGTCAATGGCAATG
CGTGACGCACGATTGTCGGGCGGCGCCCACCCTTCTGCAAGACAGAGATT
TAGACGCCGTGGCTGCTGCTGGTGGCTCTGGTAGAAAATTAAAGGGGAGG
CACCATCAGGTGATTCCAACACCGAAGGAGGTAATGGCACGGCTATTTGC
CGACGATCGAAAGGTTAAAGGTATGGTGTTGTCGGCCAAGTCTTGA
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Synonyms
Publications