NO11G03010.1, NO11G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03010.1
Unique NameNO11G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr11:945326..946728 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:945326..946728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03010.1 vs.
Match: EWM24896.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 367.1 bits (941), Expect = 4.600e-98
Identity = 196/262 (74.81%), Postives = 218/262 (83.21%), Query Frame = 0 
Query:    1 MVLSHVTALVTGAASGLGQATALRFLQQGARVVLADLPATKPAALASLQELDQDMRARGVFAGVDVLDSSLVSAGLDRASSQWGQTVNVVVNCAGIAVAQRVLGKKGPHSLEAFLKVLSVNAGGTFNVIRLAAERMSTQVPDSNGIRGVVVTTASIAAFDGQIGQAAYAASKAAVAGLTLPLARDLSRDGVRVVSIAPGLFKTPMLAALPEQVQKELGRTVPLPNRLGDPSEFAMLVQSIVENPMINGEVIRLDGALRMPPS 263
            M +  VTALVTGAASGLG ATA RFLQQGARV+LADLP    AALASLQ L+++ R+R VFAGVDVL+SSLV+AG+D A S WGQ+VNVVVNCAGIAVAQRVLGK+GPHSLE FLKV               ++RM     D NGIRGV++ TASIAA+DGQIGQ AYAASKAAVAGLTLPLARDL+RDG+RVVSIAPGLF+TPMLAALPE VQ ELG+TVPLP RLGDP EFAML Q++VENPMINGEVIRLDGALRMPPS
Sbjct:    1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGR----------ETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPPS 252
The following BLAST results are available for this feature:
BLAST of NO11G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24896.14.600e-9874.81short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03010NO11G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03010.1NO11G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03010.1.cds1NO11G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03010.1.cds2NO11G03010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03010.1.cds3NO11G03010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03010.1.cds4NO11G03010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03010.1.cds5NO11G03010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03010.1 ID=NO11G03010.1|Name=NO11G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ATGGTGCTCAGTCACGTCACGGCCCTCGTCACCGGCGCGGCTTCGGGCCT
GGGCCAAGCCACAGCCCTGCGCTTCTTACAACAGGGAGCTCGCGTTGTGC
TGGCAGATTTACCGGCCACCAAGCCTGCGGCATTGGCCTCTCTCCAAGAG
CTTGACCAGGACATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGATGTCCT
CGACAGCTCCCTTGTCTCGGCGGGGCTGGATAGAGCTTCATCCCAATGGG
GACAGACAGTAAATGTCGTGGTTAACTGCGCAGGTATCGCCGTGGCCCAA
CGCGTACTTGGAAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCTCAAGGT
TTTGTCGGTGAATGCCGGAGGTACTTTCAACGTCATCCGCCTCGCCGCAG
AGAGAATGAGCACTCAAGTCCCAGACAGCAACGGTATTCGCGGGGTCGTC
GTTACCACGGCCAGCATCGCCGCCTTTGACGGTCAAATCGGCCAGGCTGC
CTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCCTTGCGC
GTGATCTGTCTAGGGATGGCGTGAGGGTCGTCTCGATCGCGCCTGGATTA
TTCAAGACCCCAATGCTGGCAGCCCTGCCAGAACAGGTCCAGAAAGAGCT
AGGGAGAACTGTACCGTTGCCTAACAGGCTGGGGGATCCGTCGGAATTTG
CAATGCTGGTGCAGTCTATCGTGGAGAATCCCATGATTAATGGGGAGGTG
ATCCGGTTGGATGGGGCGTTGCGGATGCCGCCATCTTGA
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protein sequence of NO11G03010.1

>NO11G03010.1-protein ID=NO11G03010.1-protein|Name=NO11G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVLSHVTALVTGAASGLGQATALRFLQQGARVVLADLPATKPAALASLQE
LDQDMRARGVFAGVDVLDSSLVSAGLDRASSQWGQTVNVVVNCAGIAVAQ
RVLGKKGPHSLEAFLKVLSVNAGGTFNVIRLAAERMSTQVPDSNGIRGVV
VTTASIAAFDGQIGQAAYAASKAAVAGLTLPLARDLSRDGVRVVSIAPGL
FKTPMLAALPEQVQKELGRTVPLPNRLGDPSEFAMLVQSIVENPMINGEV
IRLDGALRMPPS*
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mRNA from alignment at chr11:945326..946728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03010.1 ID=NO11G03010.1|Name=NO11G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at chr11:945326..946728+ (Nannochloropsis oceanica)
ATGGTGCTCAGTCACGTCACGGCCCTCGTCACCGGCGCGGCTTCGGGCCT
GGGCCAAGCCACAGCCCTGCGCTTCTTACAACAGGTAGGCCTCTTTTCCA
CCTGGCTCCCCTTGTCCTCCTTTCCTCGCTACATGCTCTGTACACACGAC
ACATGGATCCCCCTGACCCCCTATGGTTCCTCAGTCAAGCTCGAGGGGAA
ACTCACTCCAACCTACCATGACACCAAAAAGGGAGCTCGCGTTGTGCTGG
CAGATTTACCGGCCACCAAGCCTGCGGCATTGGCCTCTCTCCAAGAGCTT
GACCAGGACATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGATGTATGTGT
TGGGCCGGTGAAAGTTTGTTGTGAGCGTGCGTATGTTGTTCCCCTTTCAC
CTGCTCTCTCCATGCCATTGCTATGCGGATATCCACAACCCAACCACCTC
CCAATTCTCTTCGTCATCCTCCTTCCCCCGCACCTCCTCATTTCGTCCAT
CCTTTCCCACTGACAGGTCCTCGACAGCTCCCTTGTCTCGGCGGGGCTGG
ATAGAGCTTCATCCCAATGGGGACAGACAGTAAATGTCGTGGTTAACTGC
GCAGGTATCGCCGTGGCCCAACGCGTACTTGGAAAGAAGGGGCCGCATTC
CTTAGAGGCTTTTCTCAAGGTCAGTACAATGGCGGCGGCAGGAGGGAGCG
GAGGAAGACTTTCAGCGTTACACACGCGCACACAAGACAATGAGAGGTCT
TGTTTTCATACTTCATGATACTTACCTCTTTTCATCCTCTTCCTTCTCAT
CCTCATCCTTCTCCTCTCCCTCCTCGTTGCCCACTAAATGATTTTCTTCT
TTTACCTCCTCCTCTGGCGATAGGTTTTGTCGGTGAATGCCGGAGGTACT
TTCAACGTCATCCGCCTCGCCGCAGAGAGGTAACGACCAAGTCTATCTCG
CACTCCTTCCATCCCACCCTTTCTTTCCTCCCCCCTAATTCACCTCCTTT
CCCTCCACATTCCCCAAGAATGAGCACTCAAGTCCCAGACAGCAACGGTA
TTCGCGGGGTCGTCGTTACCACGGCCAGCATCGCCGCCTTTGACGGTCAA
ATCGGCCAGGCTGCCTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCTAAC
CCTCCCCCTTGCGCGTGATCTGTCTAGGGATGGCGTGAGGGTCGTCTCGA
TCGCGCCTGGATTATTCAAGACCCCAATGCTGGCAGCCCTGCCAGAACAG
GTCCAGAAAGAGCTAGGGAGAACTGTACCGTTGCCTAACAGGCTGGGGGA
TCCGTCGGAATTTGCAATGCTGGTGCAGTCTATCGTGGAGAATCCCATGA
TTAATGGGGAGGTGATCCGGTTGGATGGGGCGTTGCGGATGCCGCCATCT
TGA
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Coding sequence (CDS) from alignment at chr11:945326..946728+

>NO11G03010.1 ID=NO11G03010.1|Name=NO11G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr11:945326..946728+ (Nannochloropsis oceanica)
ATGGTGCTCAGTCACGTCACGGCCCTCGTCACCGGCGCGGCTTCGGGCCT
GGGCCAAGCCACAGCCCTGCGCTTCTTACAACAGGGAGCTCGCGTTGTGC
TGGCAGATTTACCGGCCACCAAGCCTGCGGCATTGGCCTCTCTCCAAGAG
CTTGACCAGGACATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGATGTCCT
CGACAGCTCCCTTGTCTCGGCGGGGCTGGATAGAGCTTCATCCCAATGGG
GACAGACAGTAAATGTCGTGGTTAACTGCGCAGGTATCGCCGTGGCCCAA
CGCGTACTTGGAAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCTCAAGGT
TTTGTCGGTGAATGCCGGAGGTACTTTCAACGTCATCCGCCTCGCCGCAG
AGAGAATGAGCACTCAAGTCCCAGACAGCAACGGTATTCGCGGGGTCGTC
GTTACCACGGCCAGCATCGCCGCCTTTGACGGTCAAATCGGCCAGGCTGC
CTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCCTTGCGC
GTGATCTGTCTAGGGATGGCGTGAGGGTCGTCTCGATCGCGCCTGGATTA
TTCAAGACCCCAATGCTGGCAGCCCTGCCAGAACAGGTCCAGAAAGAGCT
AGGGAGAACTGTACCGTTGCCTAACAGGCTGGGGGATCCGTCGGAATTTG
CAATGCTGGTGCAGTCTATCGTGGAGAATCCCATGATTAATGGGGAGGTG
ATCCGGTTGGATGGGGCGTTGCGGATGCCGCCATCTTGA
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Synonyms
Publications