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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:609732..612238 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01850.1 vs.
Match: EWM25040.1 (Protein of unknown function DUF2905 [Nannochloropsis gaditana]) HSP 1 Score: 255.0 bits (650), Expect = 2.200e-64 Identity = 145/228 (63.60%), Postives = 172/228 (75.44%), Query Frame = 0
Query: 4 MRHRHLH----TTNNEATVPAMSSTS------SSSSSSSSSSAAAAANEEEAVRAKSMGVQALQRSEYERAVRLLGISNRLSP-NADTRGLLNSALAGQARMDSGRASAHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHPSSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPLLSCFLASVAFSQVARLFQRQ 221
MR R +H TT+N ++ PA + T+ + +S +S +A AA NEEEA+RAK++GV AL+R +Y+RA R LGIS+RL P NAD RGLLNSALAGQAR D+ RASAHRAAAATAPPWS QH GRFM +DA +D W LP++ + IT Y HPS RKPLAY+SILI+ YRFVLRGPPL G LPGDIYYN GNVVVSAPL SCFLAS+AFSQVARLFQR+
Sbjct: 1 MRRRQVHGDGVTTDNASSTPASAPTTYEGTWPAPASETSPPAATAAVNEEEALRAKALGVDALRRGDYDRAARFLGISSRLLPENADIRGLLNSALAGQARTDTRRASAHRAAAATAPPWSPQHVSGRFMNGLDAVLDKVWASLPSAGQNLITRYTHPSMRKPLAYVSILIITAATYRFVLRGPPLVLGHLPGDIYYNSGNVVVSAPLFSCFLASMAFSQVARLFQRR 228
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp ATTCACGTTTTTTCTCCTATTCGTAAGTGATGTTGCCTGCATTGGCGACA AACTCCTCAAAGAAAGGATGATCCCTGAAGCCCAACGATTGGCGGAGCTC CGACACATGCGGTTGAGCCCCAAGTCACGCATCAGACTCCCCACTGCCAG CAGGAGAGACTCGCCTTTGGGCCCTTCCATCTCCCCCTCCACGAGTTCGA CCTCAAGTGGACTCTTCACCAAGACGGCTCCTTCCGACACCTGGGGGGAA ACCTCATGCCAACCCCCCACTACGGCCCCGTTCACCCTCGCGACACCTCC CCCCCCTCCCCGAAAAACAAAACATCTACTCCCAGATGCATTGCTTCACT CGAACTTTCACGCCTCTCTCGGGTCGCACACTCCCAGAACCCTGCCTCGT CGCCACTGGTGTCAAGCAAGTTGTACATGCTGCTGCCCCGTACTCCATAC CTGTGGTTGACGTAGACTACACTGCCTTAGACCGCATGATCTTCCCTGCG GTCCGCCGACTATTAGGGCTGCACCATGACACAAGCTCCATCTTCCAATG GACAAAGCTCAAAATCTGGCCATCCCACCTCCTCGCTCAGAAGCGCACTT TACCCTTTGCGGCCAAATTCACTGACTCATGGTTCTTTCTATGTGCGGTG AAACGCTTTAGAAGCGACTTTACACACTTTGCTACTTCCTTCCTCCGCCG CATGATGGACACGTTGAAACTTTTTGACAAGATATAAAATGACCTTCAAG CCCCAGAGCTTGCAGGGGATGGAGGCACTCTGAAACATGCATGTTAAGTC GGTAGCTTGAGAGACAGATTTCCTTTCCAGAGTCCGCCTCAAATTGGCCT CCTACTGCCTCTTAAAACAAACCCACTATCACCGGGTCCTTTTATCCCCA GTGACTATACCTGGACACACCCGTCTACTGTACATCCGAAAGACTGGTCT CCACGCAGCCATCGGACTACACTTTAAGCTATTCAGCCACCGCAACCGCA AAGGAATGTGGAGCGTCCAGCTTGCCTCCGGTGCCACACCCCCAAGGCCG AATTTGGTGTCCACCTCACCACATGCCTTGCCATCCCTCAGCTGCAAAGC ACTGACCTTCTCACTTGTCTGGTCCTTATTGATGCAGAAGCCTACCGCCA AAAGCCCCCACAAAGCCCCCACCCCACAGGCTTCCCAGAACCAGCCCGGG CAAAGGCCCTAGACTACCGACCTGCAATAAATAAATTTAATTATTACTGA CCCGATAAGTAGGATTGCCATCCCACGTGATCACATCATCCCCTGGAAAA TTTACCACTTTAAGTGCGTTCACCAGACGGGAGGTTAGTGAATGATGGCC CAAGCTTTCTCCCCCCACCCCCCCACAAACCATAGAGGCACAGTCTTCCC CACTCGACTTGCAAATGGTTATTGGTGACCCGTTAAGACATTTCGATAAA TTAAGAGGCTTTACCATGGTCAATGTCGAACTCACGAAAGAACCAATCAA TCAATCAATCAATCAATCATCGCGCGGCATTATTTGACTTTTTGTACACG CCCTGACGTGCCCACGCCACCTCCCACCGTACCGACAGTACATCGAGGAT AAAGGTAAGACAAACGTCATGGAAGGCATGCGGCACCGCCACCTTCATAC AACAAACAACGAGGCAACAGTGCCCGCGATGTCGTCGACATCCTCCTCCT CCTCCTCCTCCTCCTCATCCTCAGCAGCCGCAGCGGCCAATGAGGAGGAA GCCGTACGGGCTAAATCCATGGGGGTCCAAGCTTTGCAACGGAGTGAGTA TGAGCGCGCTGTCCGGCTACTGGGCATCAGCAACCGCCTTTCGCCCAACG CTGACACCCGAGGTCTCCTCAATTCTGCTTTGGCAGGCCAAGCCCGCATG GACAGTGGCCGTGCCTCAGCGCACCGTGCCGCTGCTGCGACTGCCCCACC ATGGTCAGATCAACATTCATTTGGTCGCTTCATGATCAAGGTTGACGCGG CGATGGACTGGGCGTGGGAGTATTTGCCCACGTCAGCAAAAGGCGCGATC ACATGCTACATTCATCCATCGAGTCGCAAACCTCTGGCATACATTTCAAT CCTTATTCTGGGTATGTGCTTGTACAGGTTTGTGTTGCGTGGCCCGCCAT TGGCATTTGGACGGCTACCGGGTGATATTTATTATAATAGGGGGAATGTG GTGGTGTCTGCCCCGTTGCTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAG TCAGGTGGCCCGCCTTTTCCAACGACAGGCCAGACGATGATGCTGGTGGT GGTGTTGATGGCAACGGATGGAAAGAAGGGAAGAAGAGAGTAAGGGAGAA ACGACAGGCGGGATGCTATGGGACGTTTTCATATAATAGATGTAAATGAC TGGAGACGTCAAGAGACTCGACGCTTGAGTGGGGAAGAAGAGTAACATGT AGAAAATGACGACAGGACCCGTTTGAACAAGTATCAGAACTTGGTTGAAA AAGTTTC back to topprotein sequence of NO11G01850.1 >NO11G01850.1-protein ID=NO11G01850.1-protein|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp MEGMRHRHLHTTNNEATVPAMSSTSSSSSSSSSSSAAAAANEEEAVRAKS MGVQALQRSEYERAVRLLGISNRLSPNADTRGLLNSALAGQARMDSGRAS AHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHP SSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPL LSCFLASVAFSQVARLFQRQARR* back to topmRNA from alignment at chr11:609732..612238- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp|location=Sequence derived from alignment at chr11:609732..612238- (Nannochloropsis oceanica) ATTCACGTTTTTTCTCCTATTCGTAAGTGATGTTGCCTGCATTGGCGACA
AACTCCTCAAAGAAAGGATGATCCCTGAAGCCCAACGATTGGCGGAGCTC
CGACACATGCGGTTGAGCCCCAAGTCACGCATCAGACTCCCCACTGCCAG
CAGGAGAGACTCGCCTTTGGGCCCTTCCATCTCCCCCTCCACGAGTTCGA
CCTCAAGTGGACTCTTCACCAAGACGGCTCCTTCCGACACCTGGGGGGAA
ACCTCATGCCAACCCCCCACTACGGCCCCGTTCACCCTCGCGACACCTCC
CCCCCCTCCCCGAAAAACAAAACATCTACTCCCAGATGCATTGCTTCACT
CGAACTTTCACGCCTCTCTCGGGTCGCACACTCCCAGAACCCTGCCTCGT
CGCCACTGGTGTCAAGCAAGTTGTACATGCTGCTGCCCCGTACTCCATAC
CTGTGGTTGACGTAGACTACACTGCCTTAGACCGCATGATCTTCCCTGCG
GTCCGCCGACTATTAGGGCTGCACCATGACACAAGCTCCATCTTCCAATG
GACAAAGCTCAAAATCTGGCCATCCCACCTCCTCGCTCAGAAGCGCACTT
TACCCTTTGCGGCCAAATTCACTGACTCATGGTTCTTTCTATGTGCGGTG
AAACGCTTTAGAAGCGACTTTACACACTTTGCTACTTCCTTCCTCCGCCG
CATGATGGACACGTTGAAACTTTTTGACAAGATATAAAATGACCTTCAAG
CCCCAGAGCTTGCAGGGGATGGAGGCACTCTGAAACATGCATGTTAAGTC
GGTAGCTTGAGAGACAGATTTCCTTTCCAGAGTCCGCCTCAAATTGGCCT
CCTACTGCCTCTTAAAACAAACCCACTATCACCGGGTCCTTTTATCCCCA
GTGACTATACCTGGACACACCCGTCTACTGTACATCCGAAAGACTGGTCT
CCACGCAGCCATCGGACTACACTTTAAGCTATTCAGCCACCGCAACCGCA
AAGGAATGTGGAGCGTCCAGCTTGCCTCCGGTGCCACACCCCCAAGGCCG
AATTTGGTGTCCACCTCACCACATGCCTTGCCATCCCTCAGCTGCAAAGC
ACTGACCTTCTCACTTGTCTGGTCCTTATTGATGCAGAAGCCTACCGCCA
AAAGCCCCCACAAAGCCCCCACCCCACAGGCTTCCCAGAACCAGCCCGGG
CAAAGGCCCTAGACTACCGACCTGCAATAAATAAATTTAATTATTACTGA
CCCGATAAGTAGGATTGCCATCCCACGTGATCACATCATCCCCTGGAAAA
TTTACCACTTTAAGTGCGTTCACCAGACGGGAGGTTAGTGAATGATGGCC
CAAGCTTTCTCCCCCCACCCCCCCACAAACCATAGAGGCACAGTCTTCCC
CACTCGACTTGCAAATGGTTATTGGTGACCCGTTAAGACATTTCGATAAA
TTAAGAGGCTTTACCATGGTCAATGTCGAACTCACGAAAGAACCAATCAA
TCAATCAATCAATCAATCATCGCGCGGCATTATTTGACTTTTTGTACACG
CCCTGACGTGCCCACGCCACCTCCCACCGTACCGACAGTACATCGAGGAT
AAAGGTAAGACAAACGTCATGGAAGGCATGCGGCACCGCCACCTTCATAC
AACAAACAACGAGGCAACAGTGCCCGCGATGTCGTCGACATCCTCCTCCT
CCTCCTCCTCCTCCTCATCCTCAGCAGCCGCAGCGGCCAATGAGGAGGAA
GCCGTACGGGCTAAATCCATGGGGGTCCAAGCTTTGCAACGGAGTGAGTA
TGAGCGCGCTGTCCGGCTACTGGGCATCAGCAACCGCCTTTCGCCCAACG
CTGACACCCGAGGTCTCCTCAATTCTGCTTTGGCAGGCCAAGCCCGCATG
GACAGTGGCCGTGCCTCAGCGCACCGTGCCGCTGCTGCGACTGCCCCACC
ATGGTCAGATCAACATTCATTTGGTCGCTTCATGATCAAGGTTGACGCGG
CGATGGACTGGGCGTGGGAGTATTTGCCCACGTCAGCAAAAGGCGCGATC
ACATGCTACATTCATCCATCGAGTCGCAAACCTCTGGCATACATTTCAAT
CCTTATTCTGGGTATGTGCTTGTACAGGTTTGTGTTGCGTGGCCCGCCAT
TGGCATTTGGACGGCTACCGGGTGATATTTATTATAATAGGGGGAATGTG
GTGGTGTCTGCCCCGTTGCTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAG
TCAGGTGGCCCGCCTTTTCCAACGACAGGCCAGACGATGATGCTGGTGGT
GGTGTTGATGGCAACGGATGGAAAGAAGGGAAGAAGAGAGTAAGGGAGAA
ACGACAGGCGGGATGCTATGGGACGTTTTCATATAATAGATGTAAATGAC
TGGAGACGTCAAGAGACTCGACGCTTGAGTGGGGAAGAAGAGTAACATGT
AGAAAATGACGACAGGACCCGTTTGAACAAGTATCAGAACTTGGTTGAAA
AAGTTTC back to topCoding sequence (CDS) from alignment at chr11:609732..612238- >NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr11:609732..612238- (Nannochloropsis oceanica) ATGGAAGGCATGCGGCACCGCCACCTTCATACAACAAACAACGAGGCAAC AGTGCCCGCGATGTCGTCGACATCCTCCTCCTCCTCCTCCTCCTCCTCAT CCTCAGCAGCCGCAGCGGCCAATGAGGAGGAAGCCGTACGGGCTAAATCC ATGGGGGTCCAAGCTTTGCAACGGAGTGAGTATGAGCGCGCTGTCCGGCT ACTGGGCATCAGCAACCGCCTTTCGCCCAACGCTGACACCCGAGGTCTCC TCAATTCTGCTTTGGCAGGCCAAGCCCGCATGGACAGTGGCCGTGCCTCA GCGCACCGTGCCGCTGCTGCGACTGCCCCACCATGGTCAGATCAACATTC ATTTGGTCGCTTCATGATCAAGGTTGACGCGGCGATGGACTGGGCGTGGG AGTATTTGCCCACGTCAGCAAAAGGCGCGATCACATGCTACATTCATCCA TCGAGTCGCAAACCTCTGGCATACATTTCAATCCTTATTCTGGGTATGTG CTTGTACAGGTTTGTGTTGCGTGGCCCGCCATTGGCATTTGGACGGCTAC CGGGTGATATTTATTATAATAGGGGGAATGTGGTGGTGTCTGCCCCGTTG CTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAGTCAGGTGGCCCGCCTTTT CCAACGACAGGCCAGACGATGA back to top
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