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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:212414..214368 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00470.1 vs.
Match: XP_015761989.1 (PREDICTED: uncharacterized protein LOC107341078 [Acropora digitifera]) HSP 1 Score: 132.1 bits (331), Expect = 4.600e-27 Identity = 95/302 (31.46%), Postives = 161/302 (53.31%), Query Frame = 0
Query: 26 LLLLALSPSFLLLTHAQPDTPGYREGWSLTQFPNPTGNSKNSKTSTTYSCGAFHVEAKESTSFLCDPDALLSKKGAIAVHEMLDTIRGELKVSCPGEGGGGEEGQAPAQQQQKGLQVGVALVHKLKRTKHD-VVEEAEGFARALHGMWGVGDLACQNGVLLFLSRVDRTMYISRGKGVENLLTDDRIDQVMSDVKGLLRGGDWDGGVLMAVGKVAEWVDMGPPGFWERWGGTVVMLLVVIAFLSFAMWQERQKYLDRRGYEDAKRKLERIEREQSRLQSLELAESFEGLESCPICLEDFGEE 327
++ LA+ FLL+ Q + E W+ +FPNPT N + +CG + S++CDP+++LS + A + E+L ++R C +G+ P G Q+GVA++++++ + V + AE FA+ LH WGVG+ C +G +L +S DR +Y+S G+G +LTDD+ID ++ ++K LR ++D V +AV K+ E V G G ++ LV++ + A++ ++ D E+ KL+RI+ E+ R + S+E +SCPICLE+F E
Sbjct: 6 VVFLAVCGIFLLVQRGQSN-----EQWAKEEFPNPTINLE--------ACGR-----RGKVSWICDPESILSYESANNIEELLYSVRKNTNSGC-------SKGENP------GFQIGVAVLNRMRSNSDESVAKTAEKFAKHLHDSWGVGNAGCDDGAVLLISTDDRQVYMSTGRGATKVLTDDQIDLIIEEMKPHLRDKNYDKSVEVAVTKMGE-VFSGKVLESSLDYGLILFFLVIVTGVGLAIYLVHRRDQD---IENCTLKLQRIQDERDRAK-----HSYE-TKSCPICLEEFEPE 266
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG GGTAGATGACAGCAGCAGTAACAGAAGCCGCAGTAGTGGTGTAGGCATTG GGTCTACGATCTCCTTGGGACGAGGAAGGGGAGGAGGAGGAGGGGCTAGA GCAAGAAGATTGTTTGCAGAGGCAGAGATTTTGTATCGGCTTAGCCAGTT GCAGCGACAACACCCTAACATTGTGCGGCCGGAGATGGTTACACGATGGA CTCAACCAGGGGGGTATACAGGCAGATTTACCGCTGATGCGAGCTTTGTC GATGCAAATCCGCGTGTGCAATTTGCGCGACAGCAGGCTCACTATGGGTC GTCGGTGCGGATGGGCGGGATAGGGGCAGGGGAGAGGAGGGGGTTTGGAG GAGGGATGAGCAGTGGGGGTAGGGGAAGTCGGTGGTAGAGGGGAATTGAA GGGAGGAAAGAAGAAAAGAAAGAGTGAGAATGAATGGGTGATAGATGGAC AACAAAAGAAATAGAGTGACAAGTAAGACAATGGATGACTGAACATAGAA AGAAG back to topprotein sequence of NO11G00470.1 >NO11G00470.1-protein ID=NO11G00470.1-protein|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp MAQRLSPHPRTRRPCTPLINFALRLLLLLALSPSFLLLTHAQPDTPGYRE GWSLTQFPNPTGNSKNSKTSTTYSCGAFHVEAKESTSFLCDPDALLSKKG AIAVHEMLDTIRGELKVSCPGEGGGGEEGQAPAQQQQKGLQVGVALVHKL KRTKHDVVEEAEGFARALHGMWGVGDLACQNGVLLFLSRVDRTMYISRGK GVENLLTDDRIDQVMSDVKGLLRGGDWDGGVLMAVGKVAEWVDMGPPGFW ERWGGTVVMLLVVIAFLSFAMWQERQKYLDRRGYEDAKRKLERIEREQSR LQSLELAESFEGLESCPICLEDFGEEEGKEEEEEEREEERQGLVRRSGSG EEKGERESEGEEVILGEGRRRRREKKGSDGKRVSILGCGHAYCRSCLLMA LERERVPRCPICRRTLDEGMSGGGGGGGGGGAGGGGGGGGGGGGREEMEE WIGGKEREEGLEEEEEEGVVVKGQEQGRVEGHVG* back to topmRNA from alignment at chr11:212414..214368+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp|location=Sequence derived from alignment at chr11:212414..214368+ (Nannochloropsis oceanica) ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC
CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT
CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG
GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG
CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG
AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT
GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT
TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC
AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG
AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC
GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC
TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG
GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA
TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG
CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG
GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT
ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT
ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG
TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC
CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG
AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG
GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA
GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA
GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA
TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA
TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG
GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG
TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA
GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG
GGTAGATGACAGCAGCAGTAACAGAAGCCGCAGTAGTGGTGTAGGCATTG
GGTCTACGATCTCCTTGGGACGAGGAAGGGGAGGAGGAGGAGGGGCTAGA
GCAAGAAGATTGTTTGCAGAGGCAGAGATTTTGTATCGGCTTAGCCAGTT
GCAGCGACAACACCCTAACATTGTGCGGCCGGAGATGGTTACACGATGGA
CTCAACCAGGGGGGTATACAGGCAGATTTACCGCTGATGCGAGCTTTGTC
GATGCAAATCCGCGTGTGCAATTTGCGCGACAGCAGGCTCACTATGGGTC
GTCGGTGCGGATGGGCGGGATAGGGGCAGGGGAGAGGAGGGGGTTTGGAG
GAGGGATGAGCAGTGGGGGTAGGGGAAGTCGGTGGTAGAGGGGAATTGAA
GGGAGGAAAGAAGAAAAGAAAGAGTGAGAATGAATGGGTGATAGATGGAC
AACAAAAGAAATAGAGTGACAAGTAAGACAATGGATGACTGAACATAGAA
AGAAG back to topCoding sequence (CDS) from alignment at chr11:212414..214368+ >NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr11:212414..214368+ (Nannochloropsis oceanica) ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG GGTAG back to top
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