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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:756596..758962 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02750.1 vs.
Match: EWM25485.1 (PDZ domain protein [Nannochloropsis gaditana]) HSP 1 Score: 208.8 bits (530), Expect = 6.300e-50 Identity = 226/670 (33.73%), Postives = 300/670 (44.78%), Query Frame = 0
Query: 1 MGDWIQLHFNAAPSGHSSPSSLLP--LALCPPTAAANAPVTLISTSTPVGTASSSSSSSSSSSSSGSSSGSSNNDDEFAAVCFQNY--SSTKDTPGQRN--KRLEIGDVITISMAGGFLAWASTTTSTTPPSTSTTAPPPPSTTTPSTIDSTAAAATTEKGFEQQQQQQQQLQWVDEDDVEEKKQVFVVAAPPSTATAPV---EDEGEGREIGEGGGLHVGDSVVLVPVGGRNGGGGRLVARKAEDKDEGLHVPPFWEDASFTSSSSTFSLSNGYNKNRDRSQPSSPSPSLSFHSPKTPPPP-----RLSPFYHLYLSQDEEEINEHLQHPLKKQQQHISLYITISSLVHAVASPPP-------------PLPPSPHSSVISSTKSSSSSYYGNSTTHTILFQESDLGITIKRTPSGQAHVLRLLPHTRTNRNGVEPGDIILMIENVSETKFENSSSKSKPMAKWDLRERVLDSDSWGEMVEFIKTSPRPLKVTVVRKHKREERRKNDASSSPSSASPPSGRGENEGGGSASSSPPLSPAPPLYDMSLLERHLDFVARRHLRPTGRQFEPYTPSSPSSSSSPSLPLDAYGKRSLIYRGSLRLFQEGKLWGSAWHHREAYLFTDMLVLALPPSLP----PSR--GGRAEVEACWGLATCKLREEGGREGGR 638
MGD + + F AA +G SP+S P LALCPP A T PV ++S + +S AVC + S T+ P +R+++GDV+T+S AGG AW S TEKG +++Q FV+A PPST + P +E EG GG L VGD+ VLVPVGG RLVAR KD L P AS SSS+ S S ++ D + P P+ SLS SP +PPPP SP Y L L E+E + P L++ I+S + A AS PP P PPSP ++ + S G + ++LFQ+ DLG+++ RTPSG+A VLRL PHT+ +RNG+ GD+I+ + WDL ++VLDS+SW MV++IKTSPRPL++TV RK R + P + P G E G +AS SP PP + L P P + + +LP A R L++RG LRL+QEG+LWG +W R+AYLF+D VLA PPS P PSR R W A+ R GGR GR
Sbjct: 98 MGDLLHVTFLAA-AGSPSPTSPEPSTLALCPPPAGP--------TPQPVCLTAASGAWLEDAS----------------AVCLHSVGTSLTRRDPDLNTLPERVKVGDVVTVSGAGGSNAWMLDGRS-----------------------DQLCWGDTEKGKDRRQA-------------------FVIAPPPSTESLPEYVGVNEEEGEREDAGGALRVGDAFVLVPVGGEGLESRRLVARIPGYKDM-LRSP-----ASVLGSSSSPSHS---HRGIDPAAPPPPAASLS--SPSSPPPPSRPVAERSPVYELCLRCGEKEGMDVGSEP----PPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEEQGSRE--GADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRAGDVIIQLNE-----------------DWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVARKRPTPSR---PSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCL---------------------PACPPGLRADPTSALPSPARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLAFPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRR--GGRRAGR 640
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02750.1 ID=NO10G02750.1|Name=NO10G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp ATGGGTGACTGGATCCAACTCCACTTTAATGCAGCGCCCTCAGGACATTC CTCCCCCTCCTCTCTACTTCCACTCGCTCTCTGTCCTCCCACGGCTGCAG CCAATGCACCCGTCACTCTCATAAGTACTTCCACACCCGTCGGCACCGCC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAG CGGCAGCAGTAACAACGACGACGAGTTTGCCGCTGTCTGCTTCCAGAACT ACAGCAGCACAAAAGATACGCCTGGACAACGGAACAAAAGGTTAGAGATC GGGGATGTGATTACCATAAGTATGGCTGGTGGGTTCTTGGCTTGGGCTAG TACTACTACGTCTACTACTCCTCCTTCTACGAGTACTACTGCACCACCAC CACCATCTACAACAACTCCATCAACTATTGATAGTACTGCTGCTGCTGCT ACGACAGAGAAAGGATTTGAGCAGCAGCAGCAACAACAACAACAACTGCA ATGGGTGGATGAAGACGACGTAGAAGAGAAGAAACAGGTGTTTGTGGTAG CAGCACCTCCCTCGACTGCTACAGCGCCAGTGGAAGATGAGGGGGAAGGA AGGGAGATAGGAGAAGGAGGAGGACTGCATGTGGGAGATTCGGTAGTTCT TGTGCCAGTGGGCGGGAGAAATGGAGGAGGGGGAAGATTGGTGGCTCGAA AAGCAGAAGACAAAGACGAGGGGTTGCATGTACCGCCTTTTTGGGAGGAT GCCTCCTTCACTTCCTCCTCTTCTACTTTTTCCCTTTCCAACGGCTACAA CAAGAACAGGGATAGATCGCAGCCCTCGTCCCCCTCTCCCTCCCTTTCCT TTCATTCCCCAAAGACCCCTCCCCCTCCTCGTCTCTCTCCCTTCTACCAC CTCTACCTCAGCCAAGACGAAGAGGAAATCAACGAGCATCTACAGCATCC ACTGAAGAAGCAGCAGCAGCACATCAGCCTCTATATCACCATATCCTCCC TCGTTCACGCCGTCGCCTCCCCCCCTCCCCCTCTCCCGCCGTCTCCCCAC TCAAGCGTCATCAGCAGCACTAAGAGCAGCAGCAGCAGTTATTACGGCAA TAGCACTACACACACCATTCTCTTCCAAGAAAGCGATTTGGGGATCACAA TCAAACGGACTCCCTCGGGACAAGCCCACGTCTTGCGCCTCCTCCCTCAC ACCCGAACGAATCGCAATGGGGTCGAACCGGGTGACATCATTCTAATGAT CGAAAACGTGAGTGAAACAAAGTTTGAGAATTCAAGTTCGAAATCAAAAC CAATGGCAAAGTGGGATCTGCGTGAAAGAGTGCTGGATAGTGATAGTTGG GGAGAGATGGTTGAGTTCATAAAGACAAGCCCAAGGCCCCTGAAAGTGAC AGTGGTGCGGAAACACAAGAGGGAGGAAAGGAGGAAGAACGATGCTTCCT CCTCCCCTTCTTCAGCCTCACCTCCCTCGGGAAGAGGAGAAAATGAGGGG GGGGGTTCTGCTTCGTCTTCTCCTCCCCTCTCCCCCGCCCCCCCCCTCTA CGACATGAGCCTCCTCGAGCGCCACCTGGATTTCGTGGCCCGGCGACACC TCCGTCCAACCGGCAGGCAGTTCGAACCCTACACCCCCTCCTCGCCCTCG TCCTCTTCCTCGCCTTCCCTTCCTCTGGATGCGTATGGGAAGCGTTCCTT GATATATCGCGGGTCCCTTCGTCTCTTTCAAGAAGGGAAGCTGTGGGGCA GTGCATGGCACCACCGTGAAGCTTACCTCTTCACGGACATGCTCGTCCTC GCCCTCCCTCCCTCCCTCCCTCCCTCCCGTGGCGGGCGTGCGGAGGTGGA GGCGTGTTGGGGCTTGGCGACATGTAAGTTGAGGGAGGAAGGCGGAAGGG AGGGAGGGCGGGCTGGCACCGACCCCCTTTCGCTTGCTCGTCGGTGTAGT TTTGAGGTGGTTACCCCGCATGGCACGTATGTGTTGTGTGCAGCGTCTAA AGCCGAACATGCAGCATGGATCCGTCTTATTTATGAGGCGATGGCGGCGG TGGCGAGGAAGGGCGGGAGCGAGGGGGAGAGGGTGGGGATGAGGCATCAT TTGGTTTTGGATAGTCTGCATTGGTGCGTGGTAAATGGACGGGTAGAGGA CGCGAGGGTCCTTTTGCGGCAGCATCAGCAGCAGCAGCAGCAGCAGGAGG AGGAGGAGGAGGAGGAGGAGGGGGGGGAAGAGAGGAGGCAGGGAAGGAAG GAAGGAGGGGTAGCTGTGAAGGGGATTGGGTCGATGTCGGTAGGCCTGAT GATCCTGCTGACGGCACAGGCCCTCCCTCCCCCCGAGCCCTCTCCCGTCC TCCCTCCCTTAGCCTAG back to topprotein sequence of NO10G02750.1 >NO10G02750.1-protein ID=NO10G02750.1-protein|Name=NO10G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=789bp MGDWIQLHFNAAPSGHSSPSSLLPLALCPPTAAANAPVTLISTSTPVGTA SSSSSSSSSSSSSGSSSGSSNNDDEFAAVCFQNYSSTKDTPGQRNKRLEI GDVITISMAGGFLAWASTTTSTTPPSTSTTAPPPPSTTTPSTIDSTAAAA TTEKGFEQQQQQQQQLQWVDEDDVEEKKQVFVVAAPPSTATAPVEDEGEG REIGEGGGLHVGDSVVLVPVGGRNGGGGRLVARKAEDKDEGLHVPPFWED ASFTSSSSTFSLSNGYNKNRDRSQPSSPSPSLSFHSPKTPPPPRLSPFYH LYLSQDEEEINEHLQHPLKKQQQHISLYITISSLVHAVASPPPPLPPSPH SSVISSTKSSSSSYYGNSTTHTILFQESDLGITIKRTPSGQAHVLRLLPH TRTNRNGVEPGDIILMIENVSETKFENSSSKSKPMAKWDLRERVLDSDSW GEMVEFIKTSPRPLKVTVVRKHKREERRKNDASSSPSSASPPSGRGENEG GGSASSSPPLSPAPPLYDMSLLERHLDFVARRHLRPTGRQFEPYTPSSPS SSSSPSLPLDAYGKRSLIYRGSLRLFQEGKLWGSAWHHREAYLFTDMLVL ALPPSLPPSRGGRAEVEACWGLATCKLREEGGREGGRAGTDPLSLARRCS FEVVTPHGTYVLCAASKAEHAAWIRLIYEAMAAVARKGGSEGERVGMRHH LVLDSLHWCVVNGRVEDARVLLRQHQQQQQQQEEEEEEEEGGEERRQGRK EGGVAVKGIGSMSVGLMILLTAQALPPPEPSPVLPPLA* back to topmRNA from alignment at chr10:756596..758962+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02750.1 ID=NO10G02750.1|Name=NO10G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr10:756596..758962+ (Nannochloropsis oceanica) ATGGGTGACTGGATCCAACTCCACTTTAATGCAGCGCCCTCAGGACATTC
CTCCCCCTCCTCTCTACTTCCACTCGCTCTCTGTCCTCCCACGGCTGCAG
CCAATGCACCCGTCACTCTCATAAGTACTTCCACACCCGTCGGCACCGCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAG
CGGCAGCAGTAACAACGACGACGAGTTTGCCGCTGTCTGCTTCCAGAACT
ACAGCAGCACAAAAGATACGCCTGGACAACGGAACAAAAGGTTAGAGATC
GGGGATGTGATTACCATAAGTATGGCTGGTGGGTTCTTGGCTTGGGCTAG
TACTACTACGTCTACTACTCCTCCTTCTACGAGTACTACTGCACCACCAC
CACCATCTACAACAACTCCATCAACTATTGATAGTACTGCTGCTGCTGCT
ACGACAGAGAAAGGATTTGAGCAGCAGCAGCAACAACAACAACAACTGCA
ATGGGTGGATGAAGACGACGTAGAAGAGAAGAAACAGGTGTTTGTGGTAG
CAGCACCTCCCTCGACTGCTACAGCGCCAGTGGAAGATGAGGGGGAAGGA
AGGGAGATAGGAGAAGGAGGAGGACTGCATGTGGGAGATTCGGTAGTTCT
TGTGCCAGTGGGCGGGAGAAATGGAGGAGGGGGAAGATTGGTGGCTCGAA
AAGCAGAAGACAAAGACGAGGGGTTGCATGTACCGCCTTTTTGGGAGGAT
GCCTCCTTCACTTCCTCCTCTTCTACTTTTTCCCTTTCCAACGGCTACAA
CAAGAACAGGGATAGATCGCAGCCCTCGTCCCCCTCTCCCTCCCTTTCCT
TTCATTCCCCAAAGACCCCTCCCCCTCCTCGTCTCTCTCCCTTCTACCAC
CTCTACCTCAGCCAAGACGAAGAGGAAATCAACGAGCATCTACAGCATCC
ACTGAAGAAGCAGCAGCAGCACATCAGCCTCTATATCACCATATCCTCCC
TCGTTCACGCCGTCGCCTCCCCCCCTCCCCCTCTCCCGCCGTCTCCCCAC
TCAAGCGTCATCAGCAGCACTAAGAGCAGCAGCAGCAGTTATTACGGCAA
TAGCACTACACACACCATTCTCTTCCAAGAAAGCGATTTGGGGATCACAA
TCAAACGGACTCCCTCGGGACAAGCCCACGTCTTGCGCCTCCTCCCTCAC
ACCCGAACGAATCGCAATGGGGTCGAACCGGGTGACATCATTCTAATGAT
CGAAAACGTGAGTGAAACAAAGTTTGAGAATTCAAGTTCGAAATCAAAAC
CAATGGCAAAGTGGGATCTGCGTGAAAGAGTGCTGGATAGTGATAGTTGG
GGAGAGATGGTTGAGTTCATAAAGACAAGCCCAAGGCCCCTGAAAGTGAC
AGTGGTGCGGAAACACAAGAGGGAGGAAAGGAGGAAGAACGATGCTTCCT
CCTCCCCTTCTTCAGCCTCACCTCCCTCGGGAAGAGGAGAAAATGAGGGG
GGGGGTTCTGCTTCGTCTTCTCCTCCCCTCTCCCCCGCCCCCCCCCTCTA
CGACATGAGCCTCCTCGAGCGCCACCTGGATTTCGTGGCCCGGCGACACC
TCCGTCCAACCGGCAGGCAGTTCGAACCCTACACCCCCTCCTCGCCCTCG
TCCTCTTCCTCGCCTTCCCTTCCTCTGGATGCGTATGGGAAGCGTTCCTT
GATATATCGCGGGTCCCTTCGTCTCTTTCAAGAAGGGAAGCTGTGGGGCA
GTGCATGGCACCACCGTGAAGCTTACCTCTTCACGGACATGCTCGTCCTC
GCCCTCCCTCCCTCCCTCCCTCCCTCCCGTGGCGGGCGTGCGGAGGTGGA
GGCGTGTTGGGGCTTGGCGACATGTAAGTTGAGGGAGGAAGGCGGAAGGG
AGGGAGGGCGGGCTGGCACCGACCCCCTTTCGCTTGCTCGTCGGTGTAGT
TTTGAGGTGGTTACCCCGCATGGCACGTATGTGTTGTGTGCAGCGTCTAA
AGCCGAACATGCAGCATGGATCCGTCTTATTTATGAGGCGATGGCGGCGG
TGGCGAGGAAGGGCGGGAGCGAGGGGGAGAGGGTGGGGATGAGGCATCAT
TTGGTTTTGGATAGTCTGCATTGGTGCGTGGTAAATGGACGGGTAGAGGA
CGCGAGGGTCCTTTTGCGGCAGCATCAGCAGCAGCAGCAGCAGCAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGGGGGAAGAGAGGAGGCAGGGAAGGAAG
GAAGGAGGGGTAGCTGTGAAGGGGATTGGGTCGATGTCGGTAGGCCTGAT
GATCCTGCTGACGGCACAGGCCCTCCCTCCCCCCGAGCCCTCTCCCGTCC
TCCCTCCCTTAGCCTAG back to topCoding sequence (CDS) from alignment at chr10:756596..758962+ >NO10G02750.1 ID=NO10G02750.1|Name=NO10G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at chr10:756596..758962+ (Nannochloropsis oceanica) ATGGGTGACTGGATCCAACTCCACTTTAATGCAGCGCCCTCAGGACATTC CTCCCCCTCCTCTCTACTTCCACTCGCTCTCTGTCCTCCCACGGCTGCAG CCAATGCACCCGTCACTCTCATAAGTACTTCCACACCCGTCGGCACCGCC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAG CGGCAGCAGTAACAACGACGACGAGTTTGCCGCTGTCTGCTTCCAGAACT ACAGCAGCACAAAAGATACGCCTGGACAACGGAACAAAAGGTTAGAGATC GGGGATGTGATTACCATAAGTATGGCTGGTGGGTTCTTGGCTTGGGCTAG TACTACTACGTCTACTACTCCTCCTTCTACGAGTACTACTGCACCACCAC CACCATCTACAACAACTCCATCAACTATTGATAGTACTGCTGCTGCTGCT ACGACAGAGAAAGGATTTGAGCAGCAGCAGCAACAACAACAACAACTGCA ATGGGTGGATGAAGACGACGTAGAAGAGAAGAAACAGGTGTTTGTGGTAG CAGCACCTCCCTCGACTGCTACAGCGCCAGTGGAAGATGAGGGGGAAGGA AGGGAGATAGGAGAAGGAGGAGGACTGCATGTGGGAGATTCGGTAGTTCT TGTGCCAGTGGGCGGGAGAAATGGAGGAGGGGGAAGATTGGTGGCTCGAA AAGCAGAAGACAAAGACGAGGGGTTGCATGTACCGCCTTTTTGGGAGGAT GCCTCCTTCACTTCCTCCTCTTCTACTTTTTCCCTTTCCAACGGCTACAA CAAGAACAGGGATAGATCGCAGCCCTCGTCCCCCTCTCCCTCCCTTTCCT TTCATTCCCCAAAGACCCCTCCCCCTCCTCGTCTCTCTCCCTTCTACCAC CTCTACCTCAGCCAAGACGAAGAGGAAATCAACGAGCATCTACAGCATCC ACTGAAGAAGCAGCAGCAGCACATCAGCCTCTATATCACCATATCCTCCC TCGTTCACGCCGTCGCCTCCCCCCCTCCCCCTCTCCCGCCGTCTCCCCAC TCAAGCGTCATCAGCAGCACTAAGAGCAGCAGCAGCAGTTATTACGGCAA TAGCACTACACACACCATTCTCTTCCAAGAAAGCGATTTGGGGATCACAA TCAAACGGACTCCCTCGGGACAAGCCCACGTCTTGCGCCTCCTCCCTCAC ACCCGAACGAATCGCAATGGGGTCGAACCGGGTGACATCATTCTAATGAT CGAAAACGTGAGTGAAACAAAGTTTGAGAATTCAAGTTCGAAATCAAAAC CAATGGCAAAGTGGGATCTGCGTGAAAGAGTGCTGGATAGTGATAGTTGG GGAGAGATGGTTGAGTTCATAAAGACAAGCCCAAGGCCCCTGAAAGTGAC AGTGGTGCGGAAACACAAGAGGGAGGAAAGGAGGAAGAACGATGCTTCCT CCTCCCCTTCTTCAGCCTCACCTCCCTCGGGAAGAGGAGAAAATGAGGGG GGGGGTTCTGCTTCGTCTTCTCCTCCCCTCTCCCCCGCCCCCCCCCTCTA CGACATGAGCCTCCTCGAGCGCCACCTGGATTTCGTGGCCCGGCGACACC TCCGTCCAACCGGCAGGCAGTTCGAACCCTACACCCCCTCCTCGCCCTCG TCCTCTTCCTCGCCTTCCCTTCCTCTGGATGCGTATGGGAAGCGTTCCTT GATATATCGCGGGTCCCTTCGTCTCTTTCAAGAAGGGAAGCTGTGGGGCA GTGCATGGCACCACCGTGAAGCTTACCTCTTCACGGACATGCTCGTCCTC GCCCTCCCTCCCTCCCTCCCTCCCTCCCGTGGCGGGCGTGCGGAGGTGGA GGCGTGTTGGGGCTTGGCGACATGTAAGTTGAGGGAGGAAGGCGGAAGGG AGGGAGGGCGGGCTGGCACCGACCCCCTTTCGCTTGCTCGTCGGTGTAGT TTTGAGGTGGTTACCCCGCATGGCACGTATGTGTTGTGTGCAGCGTCTAA AGCCGAACATGCAGCATGGATCCGTCTTATTTATGAGGCGATGGCGGCGG TGGCGAGGAAGGGCGGGAGCGAGGGGGAGAGGGTGGGGATGAGGCATCAT TTGGTTTTGGATAGTCTGCATTGGTGCGTGGTAAATGGACGGGTAGAGGA CGCGAGGGTCCTTTTGCGGCAGCATCAGCAGCAGCAGCAGCAGCAGGAGG AGGAGGAGGAGGAGGAGGAGGGGGGGGAAGAGAGGAGGCAGGGAAGGAAG GAAGGAGGGGTAGCTGTGAAGGGGATTGGGTCGATGTCGGTAGGCCTGAT GATCCTGCTGACGGCACAGGCCCTCCCTCCCCCCGAGCCCTCTCCCGTCC TCCCTCCCTTAGCCTAG back to top
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