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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:392129..393594 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01330.1 vs.
Match: EWM25451.1 (endonuclease iii [Nannochloropsis gaditana]) HSP 1 Score: 165.6 bits (418), Expect = 3.300e-37 Identity = 100/190 (52.63%), Postives = 126/190 (66.32%), Query Frame = 0
Query: 193 AKRTGTGNSGIQARGGEGGGEEVKADTGKNV--INQTRAKEVGGKEMEAVTPGTDSIADYNP---------SNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSIESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAGIGPTLAPLLEFLFAWLDKEER 372
A+ G G ++ G GGE A + + AK++ G EAV ++S A P +NL RFRLLVAVILSSRTQEQIVR++++TI + YPG +FSP FA+ + S E LSEKLSFVHCNKVKS+HILQ+A I+ EFGG VP R+E LL+MAGIGPTLAPLLEFLF LD+ ++
Sbjct: 24 ARGRGAEECGKESEGAAWGGERGAARYHRREGGVATGGAKDLTGSVAEAVGEASESEAGMGPGSTLLGADAANLQRFRLLVAVILSSRTQEQIVRQAMETISREYPGPRFSPDSFAA-LPSSEALSEKLSFVHCNKVKSKHILQSAATIQTEFGGRVPGRREGLLRMAGIGPTLAPLLEFLFTRLDEGDK 212
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp AAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGC CTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCT CAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCT TCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATT CAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATA CTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTT TCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTC CTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTA AGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGT GAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAA CCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCG AAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCT TTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGG TGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAA ACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACC CCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTT TCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCG TGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTC TCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGA AAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTAC AAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGG AAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTT GCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGG AGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCG CAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATC GGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTG AGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAG CGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGA CGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAA ATACCTATGCAGGCAC back to topprotein sequence of NO10G01330.1 >NO10G01330.1-protein ID=NO10G01330.1-protein|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp MKSWTCAACTYTNERESAFCQICASGRPSVSHAPIDLRSPPSAEGKKADN ANTNKKAFSIAASRAERQQDDNGDTGIETQPAEERRASNPFSSFVYNGDD GEDDTTISSATVRAFAFMHPPQIAKRPLSKLLSDGCGGGAGEDGAGDEVA PKKKTKRNQHACGEGAPEDFEKESEDTKNATVLKWRRILGPLAKRTGTGN SGIQARGGEGGGEEVKADTGKNVINQTRAKEVGGKEMEAVTPGTDSIADY NPSNLNRFRLLVAVILSSRTQEQIVRRSIQTIEQCYPGRQFSPHFFASSI ESWETLSEKLSFVHCNKVKSRHILQTANVIEKEFGGHVPKRKEQLLKMAG IGPTLAPLLEFLFAWLDKEEREDEEDGKEGGRKQETQEGEAQVPQGQQYQ QEQQPMPSAFRGHGGDVKLENEDGEIIIVG* back to topmRNA from alignment at chr10:392129..393594- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp|location=Sequence derived from alignment at chr10:392129..393594- (Nannochloropsis oceanica) AAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGTGCGCCGC
CTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATCTGTGCCT
CAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTCCCCACCT
TCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGAAGGCATT
CAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAACGGCGATA
CTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAACCCTTTT
TCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTACGATCTC
CTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAAATAGCTA
AGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGGCGCCGGT
GAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCAAAAGAAA
CCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAGGAAAGCG
AAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATTGGGGCCT
TTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGCGAGGTGG
TGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAATGTCATAA
ACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGCAGTTACC
CCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTAACCGCTT
TCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAGCAAATCG
TGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCGACAATTC
TCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCCTTTCTGA
AAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCACATCCTAC
AAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCCTAAGAGG
AAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAGCTCCGTT
GCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAGGACGAGG
AGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGGAGAAGCG
CAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCATGCCATC
GGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAAGACGGTG
AGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACTTGTACAG
CGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATGCAGTCGA
CGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAGAATGTAA
ATACCTATGCAGGCAC back to topCoding sequence (CDS) from alignment at chr10:392129..393594- >NO10G01330.1 ID=NO10G01330.1|Name=NO10G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr10:392129..393594- (Nannochloropsis oceanica) ATGAAATCGTGGACGTGCGCCGCCTGTACCTACACCAATGAGCGCGAATC CGCTTTTTGTCAAATCTGTGCCTCAGGCCGCCCCAGCGTCTCGCATGCTC CCATCGATTTGCGCTCCCCACCTTCGGCCGAAGGCAAGAAGGCAGACAAC GCCAATACCAACAAGAAGGCATTCAGCATAGCAGCCTCGCGAGCAGAACG GCAACAGGACGATAACGGCGATACTGGGATCGAAACTCAACCGGCAGAAG AGAGGCGTGCCAGCAACCCTTTTTCTTCCTTCGTCTACAACGGTGATGAC GGCGAGGACGACACTACGATCTCCTCCGCCACGGTCCGGGCCTTTGCGTT CATGCACCCGCCGCAAATAGCTAAGCGACCTTTGAGCAAGCTGCTGAGCG ACGGTTGTGGCGGCGGCGCCGGTGAGGATGGGGCAGGGGACGAGGTCGCG CCGAAAAAGAAGACCAAAAGAAACCAACACGCATGCGGTGAGGGGGCTCC TGAGGACTTTGAAAAGGAAAGCGAAGACACCAAAAATGCGACTGTGCTAA AATGGAGGCGAATATTGGGGCCTTTGGCCAAGCGAACGGGGACTGGAAAC AGCGGTATTCAAGCGCGAGGTGGTGAAGGAGGAGGAGAGGAAGTGAAGGC GGACACCGGCAAGAATGTCATAAACCAGACAAGAGCAAAAGAAGTAGGAG GAAAAGAAATGGAAGCAGTTACCCCCGGAACTGACTCTATCGCTGACTAT AATCCTAGCAATCTTAACCGCTTTCGCCTACTCGTCGCCGTCATTCTCTC ATCGCGCACTCAAGAGCAAATCGTGCGCCGATCCATCCAAACCATCGAGC AGTGCTACCCTGGCCGACAATTCTCCCCCCACTTTTTTGCCTCTTCCATT GAGTCCTGGGAGACCCTTTCTGAAAAGTTGTCATTCGTACATTGCAATAA AGTCAAAAGCCGGCACATCCTACAAACAGCCAATGTAATCGAGAAGGAAT TTGGGGGCCATGTCCCTAAGAGGAAGGAGCAGCTGTTAAAAATGGCAGGG ATTGGACCGACCCTAGCTCCGTTGCTGGAATTTTTGTTTGCGTGGCTTGA CAAAGAAGAGAGAGAGGACGAGGAGGATGGGAAAGAGGGAGGGAGGAAGC AGGAAACGCAGGAGGGAGAAGCGCAAGTACCTCAGGGGCAGCAATATCAG CAGGAGCAGCAGCCCATGCCATCGGCGTTTCGAGGACATGGAGGAGACGT AAAATTGGAGAATGAAGACGGTGAGATCATAATCGTGGGATAG back to top
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