NO10G00260.2, NO10G00260.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00260.2
Unique NameNO10G00260.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length845
Alignment locationchr10:90320..92590 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:90320..92590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00260.2 vs.
Match: EWM25259.1 (hypothetical protein Naga_101853g1 [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 1.100e-38
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:    1 MTTLPAAAAGAAAGGG------MESEEAPEYPPPPAYFRMFAPPTKAHEDEDEDEDEDEDEDEEGVRTGK---GEGEAGEEDNFPLPPPAIPLRGTPVSVFGFPVAHLDEEGYDPIIPPEARLYSSREVVVHDEEEGEE---EGGRERGRAVMVEMDYRGELEKL 154
            M T P A +G    G       +E++EAPEYPPPP Y+RMFAP  +   D    E+E E+E+EEG        G+G  G+E+NFPLPPPAIPLRG PV+VFGFPVA+LDEE YDPI+ PEARLYS REV V+DEEEGEE   EGGRE GRAV+VEMDY+ EL+K+
Sbjct:    1 MATHPPALSGHVQAGNAGGVSCLENDEAPEYPPPPPYYRMFAPRGRLDMDGG-GEEEGEEEEEEGAAAKDEEAGDGVVGKEENFPLPPPAIPLRGKPVTVFGFPVAYLDEERYDPIVSPEARLYSCREVTVYDEEEGEEGGREGGREGGRAVIVEMDYKAELQKI 164
The following BLAST results are available for this feature:
BLAST of NO10G00260.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25259.11.100e-3860.00hypothetical protein Naga_101853g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00260NO10G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00260.2NO10G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00260.2.cds1NO10G00260.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00260.2.cds2NO10G00260.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00260.2.cds3NO10G00260.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00260.2.cds4NO10G00260.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00260.2 ID=NO10G00260.2|Name=NO10G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=845bp
ATGACGACCCTTCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGAT
GGAATCAGAGGAAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCA
TGTTCGCGCCTCCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGAC
GAGGACGAAGACGAGGACGAGGAGGGCGTACGAACAGGCAAGGGAGAAGG
AGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCTCCACCAGCAATTCCAT
TGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCCGGTGGCGCATTTGGAC
GAGGAAGGGTACGACCCGATAATCCCTCCCGAGGCCCGCCTCTACTCGAG
CCGGGAGGTGGTGGTGCACGACGAGGAGGAGGGCGAGGAGGAGGGCGGGC
GGGAGAGAGGGAGGGCGGTGATGGTGGAGATGGACTATAGAGGAGAGTTG
GAGAAGCTGCGGAAAATGCTGGCGGAGAAGGTGTTAGGAGTGATGGAGGG
GTTGAGGACGGGGAAGAGGGAGGGATCTGACTGCAATGCCCTGCTGGGGG
AAATTGGCCAGGTCATCGACAACATGTACGACGTCTTGAGCGCCTACCGA
CAGCAGCAGACGCTCTTACAAATGGTCGAGCGGATGGAGTGCCAAATTCA
GGAGAAACGAGAAGCCATCCGCTCCCTACAAACGCAGATGTGCGACTCAG
CAACAGCGGCAGAAGAAGCCGAGAGGTCATTGCGCGAGTCGTGGGAAAAA
ATGGTGGAGGGAGGGAGGGAGGGAGGGAAGGATGGAGGGAAGGCATGAAG
GTACGCGATAATCACATGTACAGCTTGTCAGGAGAAAAGGAAAAT
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protein sequence of NO10G00260.2

>NO10G00260.2-protein ID=NO10G00260.2-protein|Name=NO10G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTTLPAAAAGAAAGGGMESEEAPEYPPPPAYFRMFAPPTKAHEDEDEDED
EDEDEDEEGVRTGKGEGEAGEEDNFPLPPPAIPLRGTPVSVFGFPVAHLD
EEGYDPIIPPEARLYSSREVVVHDEEEGEEEGGRERGRAVMVEMDYRGEL
EKLRKMLAEKVLGVMEGLRTGKREGSDCNALLGEIGQVIDNMYDVLSAYR
QQQTLLQMVERMECQIQEKREAIRSLQTQMCDSATAAEEAERSLRESWEK
MVEGGREGGKDGGKA*
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mRNA from alignment at chr10:90320..92590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00260.2 ID=NO10G00260.2|Name=NO10G00260.2|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at chr10:90320..92590+ (Nannochloropsis oceanica)
ATGACGACCCTTCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGAT
GGAATCAGAGGAAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCA
TGTTCGCGCCTCCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGAC
GAGGACGAAGACGAGGACGAGGAGGGCGTACGAACAGGCAAGGGAGAAGG
AGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCTCCACCAGCAATTCCAT
TGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCCGGTGGCGCATTTGGAC
GAGGTACGGGCTTGGGGGAGGGAGGGAAGGAGGAAGAGAGGGAGGGAGGG
AAGGAGGAAGAATGGGAGGGAGGAAGGGAGGGAGGGTAGAGGTGACTTGG
CGAGGTGATGGACGGGTTAATTTTCGTAGAGGATTTGGAATGTATCCTCC
TTACTTTTGTTTTAGCAGGTCCGTCGCGGGTGGGAAAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGTAGGGGTGAACGAGGAGGAATAGTGCAAGTGCCT
ACCAAGCACCAGGCGGTGGAAAGGAGCAGGTAATGGGAAGGATGGGAAGA
CCTTGTGAACGTCACTGATGATTTAAATATCGATTAGTCTTTCTGAAAAT
TCATGCGGGCGCTTGGCTTGCTCCAGGCGCCCGGATCTGTAGAGAAACAC
TTCCTTTGCCTGAGACGTCTCAGTTTGATCTATTTGGGGTCTTGGTCTAT
CCTAATTCGATTTACAGCGAACCACATCTGTGAGGTTACCATTCATGCAC
TAGATTCCGACATTCGACTCTGCGGCTATATGATCGTTCTTCCTCCTTCC
CTCCCTCCCACCCTGTGTAGTATCATCCAAAACCGGAAACCCTCGCCATT
TCAAAGCGAGGGGATATCGACCCATTTTCTCTGAGTTAGCCTCCCTCCTT
CCCTACCGTCTTCCCTCCCCCCTTCCTTTCCCAGGAAGGGTACGACCCGA
TAATCCCTCCCGAGGCCCGCCTCTACTCGAGCCGGGAGGTGGTGGTGCAC
GACGAGGAGGAGGGCGAGGAGGAGGGCGGGCGGGAGAGAGGGAGGGCGGT
GATGGTGGAGATGGACTATAGAGGAGAGTTGGAGAAGCTGCGGAAAATGC
TGGCGGAGAAGGTGTTAGGAGTGATGGAGGGGTTGAGGACGGGGAAGAGG
GAGGGATCTGACTGGTACGTCCGCTTGGGGGGATGAAGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGATGGAAGGATGGATGACAAGACAGCCATC
CGCTCGCATCACCGTCCTCTCTTCCGTCCTCTCTTCCATCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCAA
TGCCCTGCTGGGGGAAATTGGCCAGGTCATCGACAACATGTACGACGTCT
TGAGCGCCTACCGACAGCAGCAGGTAGGGAGGGAGGGAGGGAGGGTTGAA
AACTGGGATTGATTGGTTGTCGCATCGCGCCTAGCATGGAAGGAGTGATG
ACGGGGCGGAAGGAGGGTGGGTATGGATATGGGAGGGATGGGAGGCGGAG
GGGGTCTTTGTGAGGGAGGGACGGAACGAGGGAGGGCTTCTATGTGCGAA
GGACACTGGGGTCAGCCAGAGACGAGCGAAAGCGATGAAAAACTCATCTT
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCAGACGCTCTTACAAATG
GTCGAGCGGATGGAGTGCCAAATTCAGGAGAAACGAGAAGCCATCCGCTC
CCTACAAACGCAGATGTGCGACTCAGCAACAGCGGCAGAAGAAGCCGAGA
GGTCATTGCGCGAGTCGTGGGAAAAAATGGTGGAGGGAGGGAGGGAGGGA
GGGAAGGATGGAGGGAAGGCATGAAGGTACGCGATAATCACATGTACAGC
TTGTCAGGAGAAAAGGAAAAT
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Coding sequence (CDS) from alignment at chr10:90320..92590+

>NO10G00260.2 ID=NO10G00260.2|Name=NO10G00260.2|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr10:90320..92590+ (Nannochloropsis oceanica)
ATGACGACCCTTCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGAT
GGAATCAGAGGAAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCA
TGTTCGCGCCTCCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGAC
GAGGACGAAGACGAGGACGAGGAGGGCGTACGAACAGGCAAGGGAGAAGG
AGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCTCCACCAGCAATTCCAT
TGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCCGGTGGCGCATTTGGAC
GAGGAAGGGTACGACCCGATAATCCCTCCCGAGGCCCGCCTCTACTCGAG
CCGGGAGGTGGTGGTGCACGACGAGGAGGAGGGCGAGGAGGAGGGCGGGC
GGGAGAGAGGGAGGGCGGTGATGGTGGAGATGGACTATAGAGGAGAGTTG
GAGAAGCTGCGGAAAATGCTGGCGGAGAAGGTGTTAGGAGTGATGGAGGG
GTTGAGGACGGGGAAGAGGGAGGGATCTGACTGCAATGCCCTGCTGGGGG
AAATTGGCCAGGTCATCGACAACATGTACGACGTCTTGAGCGCCTACCGA
CAGCAGCAGACGCTCTTACAAATGGTCGAGCGGATGGAGTGCCAAATTCA
GGAGAAACGAGAAGCCATCCGCTCCCTACAAACGCAGATGTGCGACTCAG
CAACAGCGGCAGAAGAAGCCGAGAGGTCATTGCGCGAGTCGTGGGAAAAA
ATGGTGGAGGGAGGGAGGGAGGGAGGGAAGGATGGAGGGAAGGCATGA
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Synonyms
Publications