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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1425067..1426678 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05340.3 vs.
Match: EWM22757.1 (hypothetical protein Naga_100516g2 [Nannochloropsis gaditana]) HSP 1 Score: 136.0 bits (341), Expect = 1.100e-28 Identity = 84/160 (52.50%), Postives = 105/160 (65.62%), Query Frame = 0
Query: 1 MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGYLDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYYVLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFSANFFKQFWSW 161
MPTPLEL IPSTTSPE SPT +K+ L+PQL +PSRAAVARM A+E+EG L+ FTY EC R+LKRLVSY +SI F++TS+VIRLGL++V+ + +YY L+S LGKISGV DPKL +YFS + FK +W W
Sbjct: 1 MPTPLEL-IPSTTSPEPSPT-SKASLQPQLY-QPSRAAVARMHALELEGRLEACFTYCECGCRVLKRLVSYMVSIAIFIFTSLVIRLGLLIVAGVALYYSFLLS-----------------------------LGKISGVKDPKLQDYFSYSSFKNYWGW 128
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=mRNA|length=1408bp GCCAAGATAGCCTTGAGCCATCATGATTGCTTGTTTGACCCGTGTTGGGG ACGAGTCTATCCCTAGTCTACGCTCTAATCAGTGGATCTCTCCCCAATCC CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG AGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGAACA AGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATTCGGA CTCAATAAGATTGGATAAGCCAACTCACTAAAGGAGAAGGGAGGGCCGAT GAAATTTACTGAAACAAATTATACATAAGGCTCAGGTAAACCTTCCCTGC TTTGTTGTTGTTTAATTATCTCGCCCATGTATCTTATCTTTTTTGTCTTC ATCTCTATTGTTTCATTCTTCAGTGTATTTTTTGGGTCATTAGAAACGTA GGTAGGAGGAGGGGCTCCAAACATTGCCTGTATCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCATTTCTTCTTCTTCG AGCTTTCCCCTTTTTTCCTCCTACATCAAAATTTTCATCTATCTCCCCGT ATTTCCTATTCCCTTCTCTCCTCCCTCCCGAGGACTTGTCTGGTGAAAAA CCTGCCAAAGCCATATAAAACTCGGCCAAAATAAGGGAAGAATATCAAAC GATTTATCGTTGGAGGGTTTTCCTTCGTGTTGTAATCCTGAGAGGAGGCA CGCTTGTGCAAACGCTTGTGTTTGTATTTGTGTGCGGATAGGTGGCACGC GATAATTCTAGGATTGTGGGGAACTACAGGAAAAGAAAAGAAAAAAAAGT CACCCAGTCCACTTCAACGTGTGCTCGCCCTTGCCAGAAATACTCACTCC GCGATCGATGACGAAAATCGTCAACGCCCATGCCTTGCCTTTTGTCCCTG CCACATTG back to topprotein sequence of NO01G05340.3 >NO01G05340.3-protein ID=NO01G05340.3-protein|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFS ANFFKQFWSWR* back to topmRNA from alignment at chr1:1425067..1426678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at chr1:1425067..1426678+ (Nannochloropsis oceanica) GCCAAGATAGCCTTGAGCCATCATGATTGCTTGTTTGACCCGTGTTGGGG
ACGAGTCTATCCCTAGTCTACGCTCTAATCAGTGGATCTCTCCCCAATCC
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
GTATGTCGAGAGGGAGAGGGGTCAGAGGGAAGGTAAAGAAGGGCAGGGGG
GAGAGATACCAAGAGTGAAAGAGTGGTTGTTGAATGCTTATGATGCATGT
TAAAGATTGAGGATGGGAAGAATGATGGTAGAGTTGGTGCGTGTATCTCA
TTTAGATCCATGATAACCCACAACCACCATCCCCCCATCATCGCCACCCC
ACAGAGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTG
AACAAGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATT
CGGACTCAATAAGATTGGATAAGCCAACTCACTAAAGGAGAAGGGAGGGC
CGATGAAATTTACTGAAACAAATTATACATAAGGCTCAGGTAAACCTTCC
CTGCTTTGTTGTTGTTTAATTATCTCGCCCATGTATCTTATCTTTTTTGT
CTTCATCTCTATTGTTTCATTCTTCAGTGTATTTTTTGGGTCATTAGAAA
CGTAGGTAGGAGGAGGGGCTCCAAACATTGCCTGTATCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCATTTCTTCTTC
TTCGAGCTTTCCCCTTTTTTCCTCCTACATCAAAATTTTCATCTATCTCC
CCGTATTTCCTATTCCCTTCTCTCCTCCCTCCCGAGGACTTGTCTGGTGA
AAAACCTGCCAAAGCCATATAAAACTCGGCCAAAATAAGGGAAGAATATC
AAACGATTTATCGTTGGAGGGTTTTCCTTCGTGTTGTAATCCTGAGAGGA
GGCACGCTTGTGCAAACGCTTGTGTTTGTATTTGTGTGCGGATAGGTGGC
ACGCGATAATTCTAGGATTGTGGGGAACTACAGGAAAAGAAAAGAAAAAA
AAGTCACCCAGTCCACTTCAACGTGTGCTCGCCCTTGCCAGAAATACTCA
CTCCGCGATCGATGACGAAAATCGTCAACGCCCATGCCTTGCCTTTTGTC
CCTGCCACATTG back to topCoding sequence (CDS) from alignment at chr1:1425067..1426678+ >NO01G05340.3 ID=NO01G05340.3|Name=NO01G05340.3|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at chr1:1425067..1426678+ (Nannochloropsis oceanica) ATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACAAGCCCTGAAAG CAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACTATCACGGGAAC CCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGATGGAAGGGTAC CTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGCCTATTGAAGCG CTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTACACCAGTATTG TTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCATTTATTACTAC GTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAGGTGGACTGGAA AGATAAAAGATGCACACTCGTACAAAACATCATTCAATCACAGTTGGGCC TTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACGAGTACTTCTCG GCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGA back to top
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