NO01G05280.3, NO01G05280.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05280.3
Unique Name	NO01G05280.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2570
Alignment location	chr1:1408445..1411768 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1408445..1411768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G05280.3 vs.
Match: EWM22755.1 (poly -binding protein 4 isoform c [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 1.500e-25
Identity = 99/289 (34.26%), Postives = 149/289 (51.56%), Query Frame = 0

Query:    2 ETAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSS------QPNDSLS-HYEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASRVRKSSPSGEDGIIAAS------SHEKFELSP-PGIKMVIDSSKAGLLLGKGGVIISKIRSKSKARVLLLDQSLSAKEGAVSHE 277
            +  P   Q  + H  H TQ+   +++  QD  DC S +LS        P +S S H   +  +  C           +AP+++      +RLL+P +R+G+ IGR+G  IR +   TGA +++       RD A+R++VV GS  +VCWAVDLLAQK GLF GYSNI    K   + K +  TP   +         +  P     +   SP+ E+ I  A+        +  ++ P PGI++++ SS AG LLG+ G  IS IRS+S AR++LL++  SA EG +  E
Sbjct:   14 DNPPACLQSQKGHARHFTQDICMVED-FQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDC-------HQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHK-MGRTPVMDA--------NSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGE 285

The following BLAST results are available for this feature:

BLAST of NO01G05280.3 vs.

BLAST of NO01G05280.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22755.1	1.500e-25	34.26	poly -binding protein 4 isoform c [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05280	NO01G05280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05280.3	NO01G05280.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05280.3.cds1	NO01G05280.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05280.3.cds2	NO01G05280.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05280.3.cds3	NO01G05280.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05280.3.cds4	NO01G05280.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05280.3.cds5	NO01G05280.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05280.3.cds6	NO01G05280.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1408445..1411768-
coding sequence from alignment at chr1:1408445..1411768-

mRNA sequence

>NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp
CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGACACAGAAGACACTGGTTCTGCACCTAGAAAGGATCGGCTG
GCTTAAAAACGCCTTGATTGTGATGCCACAAAATTATATTGCTGTTAAAT
GAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTTAGTACTAGGTTTTTC
AAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGGAGACTGCACCGCAAA
ATCAGCAACGAGACCGAAAGCATATCCATCATGTCACCCAAGAATTCTCC
AGCATCGATGAAGGCTGCCAAGATGACCACGATTGTGACTCGTCCGACTT
ATCATCGCAACCCAACGACTCTTTGTCCCACTACGAGGGTGAGCCCAGCT
TGTCAACTTGCTCTTTGCGTCCTGGTCTGTACCAGCACACTGGGCAAGCG
CCTCATCAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAG
CACCCGAATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTA
TTTGCGATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAAC
AAGCGCGATTCCGCGCATCGCATGGTTGTTGTCATGGGCTCCGCAATGTC
CGTCTGCTGGGCTGTGGACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAG
GCTATAGCAACATCCACCCCCACCATAAAAGTCGAAAGCACTTAAAAACG
CTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGTATTGACTTAAA
AGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAAATCCAGCCCTT
CGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGAAGTTTGAGCTA
TCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAGGCGGGCTTGCT
ATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCCAAAG
CACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGCTGTA
AGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCGATCA
ATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTACAGAT
TGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGCCGAC
GTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGACGCCT
GAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATCATCC
GCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCTACCT
TCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTCTGTG
GCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGGTACG
TATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAGGAGA
TGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAACAAC
TTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCACACCT
TTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACCGTAC
CTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGCTCAA
ACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGGTACA
AAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAAGACT
CGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGAGGAG
CAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAACTCTG
TAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTACATTC
TCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCAATGT
GTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAATTCA
AAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCAAAGG
AATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAAGCTT
CTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAAACTT
AAGAGCCATCATATTCGGGC

protein sequence of NO01G05280.3

>NO01G05280.3-protein ID=NO01G05280.3-protein|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAVSHEGHKITKHKHKIFDQYHLSI*

mRNA from alignment at chr1:1408445..1411768-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=mRNA|length=3324bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica)
CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGGTATACAAAGCGAAATATATTGAGCCTTGATGCAGAGAATA
TCACAGCACAGCCAAACCTATCCCCTGCTGACAACACAGATGTATACGTC
TGGACGAGAATCCCCAGTGACTATAGCACAAACGACTCACCTCTCTTTCT
ACCAACATATTGCCTCCTGCATAGACACAGAAGACACTGGTTCTGCACCT
AGAAAGGATCGGCTGGCTTAAAAACGCCTTGATTGTGATGCCACAAAATT
ATATTGCTGTTAAATGAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTT
AGTACTAGGTTTTTCAAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGG
AGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCATGTC
ACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACGATTG
TGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCACTACG
AGGGGTAAGTGAAGCAACCCAAATTTTTGAAGGCATGGTCAAACGACCCT
GCATCTTGGCCTTGGAGCAAAAATCAGCTTGTCCTCACCGATCTTGTACT
CTCACACACTCACACACTACAGTGAGCCCAGCTTGTCAACTTGCTCTTTG
CGTCCTGGTCTGTACCAGCACACTGGGCAAGGTACGTTTTGCATAAGTGC
TTTCCAAAGGCTATCCTTGCAACGTGCACCCAACTCTCTGCATCAACATC
TCATCATTGTTCCCTTGTGATAATCCCACAATGCCTGTGTAGCGCCTCAT
CAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAGCACCCG
AATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTATTTGCG
ATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAACAAGCGC
GATTCCGCGCATCGCATGGTACGTCCTACTCTTCGGTCCTTTGTCCATGC
AGCATCGACAGTCGATTGAAACTCATCATGCATATTTCTCCTTTTCATTT
ACGCACAGGTTGTTGTCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTG
GACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCA
CCCCCACCATAAAAGGTGAGATGAGCACTCAAAGATTAGGAATGAGGCAA
TTTTGGCCCAAGCTATATCCCATCTCATTCCTTACCGCACAGTCGAAAGC
ACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGT
ATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAA
ATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGA
AGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAG
GTATTTCTCACAAAATCATTTCTCAAAAACATGTCCTGGCATTCGTCTCT
TTTCACGTACTATATAACGTCTAACTTTATCAAGTGCCCTTGTGCAACGC
GATTTTCCAAGCTCACTCATTCATATTTTCCCTTCCGCTTATACCTTCTC
TCCCGCCCCGTCCCCCTTCTTTCTGTTTATGACTTCAATGCAGGCGGGCT
TGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCC
AAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGC
TGTAAGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCG
ATCAATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTAC
AGATTGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGC
CGACGTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGAC
GCCTGAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATC
ATCCGCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCT
ACCTTCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTC
TGTGGCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGG
TACGTATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAG
GAGATGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAA
CAACTTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCAC
ACCTTTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACC
GTACCTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGC
TCAAACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGG
TACAAAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAA
GACTCGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGA
GGAGCAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAAC
TCTGTAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTAC
ATTCTCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCA
ATGTGTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAA
TTCAAAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCA
AAGGAATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAA
GCTTCTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAA
ACTTAAGAGCCATCATATTCGGGC

Coding sequence (CDS) from alignment at chr1:1408445..1411768-

>NO01G05280.3 ID=NO01G05280.3|Name=NO01G05280.3|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica)
ATGGAGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCA
TGTCACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACG
ATTGTGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCAC
TACGAGGGTGAGCCCAGCTTGTCAACTTGCTCTTTGCGTCCTGGTCTGTA
CCAGCACACTGGGCAAGCGCCTCATCAACTCCCACTCGTGGACACTTACG
CCCGTTTACTGCTGCCCAGCACCCGAATGGGTATAATAATTGGTCGTAGG
GGGGAAGCGATTCGCAGTATTTGCGATATTACAGGGGCACACGTGAGCAT
TGCTTCCCTCGAGCATAACAAGCGCGATTCCGCGCATCGCATGGTTGTTG
TCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTGGACTTGCTTGCCCAA
AAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCACCCCCACCATAAAAG
TCGAAAGCACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTC
CCACCCGTATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGA
GTACGTAAATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTC
GCACGAGAAGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACT
CCTCCAAGGCGGGCTTGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAA
ATTCGCTCAAAATCCAAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAG
CGCCAAGGAAGGAGCTGTAAGTCACGAGGGACATAAAATCACAAAGCACA
AGCATAAAATATTCGATCAATACCATCTTTCAATCTGA

Synonyms

Publications