NO01G04760.1, NO01G04760.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04760.1
Unique Name	NO01G04760.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2932
Alignment location	chr1:1257815..1261057 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1257815..1261057 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G04760.1 vs.
Match: EWM29395.1 (hypothetical protein Naga_100042g22 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 3.200e-9
Identity = 86/216 (39.81%), Postives = 111/216 (51.39%), Query Frame = 0

Query:  397 QAP--ASSTATTTITTPAASFLRSFST-SSFQQPGVSPNGGGKGGGGEGETQMHQPGG-----------LQDSVYSTFSGMGGGGGGGASIFLPGSESMSLSMVQSAMLDMPSLYLGQSTAFGAGASTFLVGGGSTLSPPGAAGVGAPGADVDGGGPDDLLPPFPPHTAPPFLSSSPVLQPWPRGLTGPTHALIPSTIIEGSEAGGCSTGTLDQSE 599
            QAP  A +T ++ +  PAA    +  T       G    GGG+ GG E E +   PG            LQ+S   T S MGGG     S+ L G++S+SLSM+QSAM  MPSLYLGQSTAFGAGASTFL  G ++ S       G  G+ + G   + +  P     APPF +S  +  P PR      +A IP+TI+EGS    C    L +SE
Sbjct:   22 QAPLHAPTTGSSLLYPPAALHPPATETWGENANAGKLEGGGGREGGQENEPR-RGPGWEPRYNASLASELQESTLLT-SRMGGGMS--TSMSLLGADSISLSMLQSAMGGMPSLYLGQSTAFGAGASTFL--GTASFS-------GLNGSTIQGDPRESISLP----GAPPFFTSPHLPPPLPRRGDETANA-IPATIMEGSHITECDASALAESE 219

The following BLAST results are available for this feature:

BLAST of NO01G04760.1 vs.

BLAST of NO01G04760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29395.1	3.200e-9	39.81	hypothetical protein Naga_100042g22 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04760	NO01G04760	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04760.1	NO01G04760.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04760.1.cds1	NO01G04760.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04760.1.cds2	NO01G04760.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04760.1.cds3	NO01G04760.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04760.1.cds4	NO01G04760.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1257815..1261057-
coding sequence from alignment at chr1:1257815..1261057-

mRNA sequence

>NO01G04760.1 ID=NO01G04760.1|Name=NO01G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2932bp
CCGTAATCCACAAGAAATACACCGACAAACTGCCCAAGTACACAATTTCC
TCTTTTTTTCCATTATCTCCCCCTCTTATCCCTCACCCCCCCGTCTCCAC
CTCGTCCTACTTCTAACGCACTGTGGAAAACTGTGCCAATTCGGACGTCG
TGAACTCAGGTACTGTACAAACGCCTCCCAAGTCCCTGTCTATTCCCACC
CGGCTCTGTCCACAGAAAGCCGCTAACGGGGATCGAGGCCCGTAAATCTT
GGCTTGCCGCACGTGCGTGTCCCGCCCGTTTTGATGCATGGCAATTATGC
TTATTTGCAAGAAGAAAGCCCGTAAAAGACCTCCTTGTGATTCACCAGTG
TCCATCCCCACGAGCGAGCCAGGGCCGTCTGGTCCGTAGGCATACGGGTT
GCGCAGAGGCACCTTCACCCATCCTTGCGGCTCCTTCAAATTGACCACTT
GGATCTCCACCAGGTCATGAAACGTGGTGCCAGCCTTCATGCTGATTTTT
TTTGGGGTATAAGATTCATCCAAACTGTAGTCCAGGTATAGCGCCACCTC
CAAGATGGTCATTTTCTTGTGGAATTGCACGTTGATCAAGTGGGGTTGTG
CTCCGTCCGACTGCCAGTATGTGTCCATGTTGTCGTCTCGAATTTGCTCC
ACGCCGTTGCCAGGCTTGGCCGTCGACAAAGACCATACCGCCTCATGCCC
AATCTCTCGCAGTTCCTTGGTGGAGATGAGCGCGGCCGTCGTGGTGCTGG
TGCTAGTGCTAGCCTCAGCTGTCGATGCAGCATCCATGACGGCCGACACA
GCGTTGGGGAAAGGGGCGTGCTTCCAGAGCTAGACGCTAGCTGCTGCAAG
GGGTCCCAGGCAGCAAGCCCCGAGTAGTAAACCCGCTCTCTGTGCGTGTG
TTGAGGGGACAGAGGGAGCGATTTTCGAGGTTGTGTTCGCAGGAGAAAAA
GCAGCGGCAACTCCGTGGAAACCGAAACCATCGCCAGCTCGCTGAATTCA
GCGCTCGACATGCGTCTTACAGCACACTACCGCCCCCAAGCATACACAGG
GCGGCACAGTTATGCAGGCAGCCGCGTCACTCGCAGGCCAAGTCACCCTT
CCTGCCGACGATGAACCTTTCCCTTCCCAACCCTCGCCACCACGGCATCC
CCCGCTCACCGCTGTCCCATCCCCAGCTTCAGACGCCATGATGCCAATGC
TGGACTTGGAAGCCCCTGTCGTGGTAATGCGGCTGCCGGGCAAGCGGCCC
CGATGCAGACCTTGGAGTCCAGCAGAGGAGGCGCGGCTGACAGACGTGTG
CCAAAACTTCTGGCCGGACGTGAATTGGCCATTAGTAGCCGGAGAACTGG
GCCGTGATGTCCGTGATTGCATCTCACGAAGTACCTTGCTGCATCTCCAA
GATCTACGCGGCGAGGCCCCTGTGTCATCACCGAAGGAATTCTCGCCGAC
ACATTCGCAGCCTGCACAATCAGCAGAACAACAATTGCAGAATGAGGATG
ACGACACCATGCCCACCGCGACAAGGACAATTGGGAAAGGTTTCAAGGAC
AAGGGTTTTCACATAGCTTCTGGTAGTTTACACAAAACAGAAGCCAGTAG
TAATAACAGTAGTAGAAAAAGTAGTAGTAGTAGTAGTAGGAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATTATAATAGTAGT
GGTGGTGGTGGTGGTGGTGGTAGTAGTAGTAGTAGTAGTAGCAGCAGCAG
CAGCGTGATCAATAACCCATTACCTAGCCAGGTGGTAGCTCTGGCCTTGC
AGCACCAATTTCATTGGGTGGCCGTTGGCAGAGCCCTCAAGGCCGATCCT
TGGGAGTGTTGGAAGACCTACGAGGCCTACACCCAAGAAAAAAACTTCCA
CAGCGATGACACTGATGCAAGTCATGGGCCCACAACCATTTCATCTCTTG
CCGATGACGTGGCCGCATTCCTGCCGTTTGCCTCCTCCCCCTCCTCTCTG
CGAAGGAATCCTCGTGCTCCTCCCTACGACACCTTCAACCATCACCAGTC
CCCCGTCGCATCCGCTACTACTGCAGCTGTTACTACTGGAGGCGAGGATG
ACAAGGGCAGCAATAACCGCAGCAACATATGCAGCCCCATCTCTCCCCCC
CCTTCTGCGCTTTCTCCACTCATGGGAGCAGGCGGTCCTTCCTTCCTCCT
CCATCACTTCCCTCGACCCAACCCACGGTCACGGCTCTCCGTTTCTCCCC
AGGCCCCTGCTAGCAGCACCGCAACTACCACTATCACCACCCCTGCTGCC
TCCTTCCTTCGTTCCTTCTCTACATCCTCGTTTCAGCAGCCAGGCGTAAG
CCCCAATGGAGGAGGAAAAGGGGGAGGAGGAGAAGGAGAAACACAAATGC
ATCAGCCTGGAGGTCTGCAAGACAGTGTATATAGCACATTTTCTGGGATG
GGGGGAGGAGGTGGAGGAGGGGCATCCATTTTCTTGCCAGGTTCTGAAAG
CATGAGCTTGTCGATGGTTCAATCGGCCATGTTGGACATGCCCTCTCTTT
ATCTCGGGCAATCCACCGCATTTGGTGCGGGCGCTTCTACATTTTTGGTC
GGGGGGGGTTCGACCCTCTCTCCTCCCGGTGCTGCTGGTGTAGGTGCGCC
TGGCGCTGATGTTGATGGCGGTGGTCCAGACGATCTCCTGCCACCGTTCC
CCCCTCATACAGCCCCTCCATTTCTATCATCCTCCCCTGTGCTTCAACCA
TGGCCACGAGGCCTGACTGGACCGACGCACGCGCTTATACCGTCGACCAT
TATTGAAGGGTCGGAAGCCGGCGGCTGTAGCACAGGTACTTTGGACCAGT
CGGAATTGAAAAAATAGACAGTAGAACAGAAGTGCAGGAATCAAAGTCAA
TTGTAGGAATGTCACATCAAAAGCTTTCTTGT

protein sequence of NO01G04760.1

>NO01G04760.1-protein ID=NO01G04760.1-protein|Name=NO01G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MQAAASLAGQVTLPADDEPFPSQPSPPRHPPLTAVPSPASDAMMPMLDLE
APVVVMRLPGKRPRCRPWSPAEEARLTDVCQNFWPDVNWPLVAGELGRDV
RDCISRSTLLHLQDLRGEAPVSSPKEFSPTHSQPAQSAEQQLQNEDDDTM
PTATRTIGKGFKDKGFHIASGSLHKTEASSNNSSRKSSSSSSRSSSSSSS
SSSSSSSSNYNSSGGGGGGGSSSSSSSSSSSVINNPLPSQVVALALQHQF
HWVAVGRALKADPWECWKTYEAYTQEKNFHSDDTDASHGPTTISSLADDV
AAFLPFASSPSSLRRNPRAPPYDTFNHHQSPVASATTAAVTTGGEDDKGS
NNRSNICSPISPPPSALSPLMGAGGPSFLLHHFPRPNPRSRLSVSPQAPA
SSTATTTITTPAASFLRSFSTSSFQQPGVSPNGGGKGGGGEGETQMHQPG
GLQDSVYSTFSGMGGGGGGGASIFLPGSESMSLSMVQSAMLDMPSLYLGQ
STAFGAGASTFLVGGGSTLSPPGAAGVGAPGADVDGGGPDDLLPPFPPHT
APPFLSSSPVLQPWPRGLTGPTHALIPSTIIEGSEAGGCSTGTLDQSELK
K*

mRNA from alignment at chr1:1257815..1261057-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04760.1 ID=NO01G04760.1|Name=NO01G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3243bp|location=Sequence derived from alignment at chr1:1257815..1261057- (Nannochloropsis oceanica)
CCGTAATCCACAAGAAATACACCGACAAACTGCCCAAGTACACAATTTCC
TCTTTTTTTCCATTATCTCCCCCTCTTATCCCTCACCCCCCCGTCTCCAC
CTCGTCCTACTTCTAACGCACTGTGGAAAACTGTGCCAATTCGGACGTCG
TGAACTCAGGTACTGTACAAACGCCTCCCAAGTCCCTGTCTATTCCCACC
CGGCTCTGTCCACAGAAAGCCGCTAACGGGGATCGAGGCCCGTAAATCTT
GGCTTGCCGCACGTGCGTGTCCCGCCCGTTTTGATGCATGGCAATTATGC
TTATTTGCAAGAAGAAAGCCCGTAAAAGACCTCCTTGTGATTCACCAGTG
TCCATCCCCACGAGCGAGCCAGGGCCGTCTGGTCCGTAGGCATACGGGTT
GCGCAGAGGCACCTTCACCCATCCTTGCGGCTCCTTCAAATTGACCACTT
GGATCTCCACCAGGTCATGAAACGTGGTGCCAGCCTTCATGCTGATTTTT
TTTGGGGTATAAGATTCATCCAAACTGTAGTCCAGGTATAGCGCCACCTC
CAAGATGGTCATTTTCTTGTGGAATTGCACGTTGATCAAGTGGGGTTGTG
CTCCGTCCGACTGCCAGTATGTGTCCATGTTGTCGTCTCGAATTTGCTCC
ACGCCGTTGCCAGGCTTGGCCGTCGACAAAGACCATACCGCCTCATGCCC
AATCTCTCGCAGTTCCTTGGTGGAGATGAGCGCGGCCGTCGTGGTGCTGG
TGCTAGTGCTAGCCTCAGCTGTCGATGCAGCATCCATGACGGCCGACACA
GCGTTGGGGAAAGGGGCGTGCTTCCAGAGCTAGACGCTAGCTGCTGCAAG
GGGTCCCAGGCAGCAAGCCCCGAGTAGTAAACCCGCTCTCTGTGCGTGTG
TTGAGGGGACAGAGGGAGCGATTTTCGAGGTTGTGTTCGCAGGAGAAAAA
GCAGCGGCAACTCCGTGGAAACCGAAACCATCGCCAGCTCGCTGAATTCA
GCGCTCGACATGCGTCTTACAGCACACTACCGCCCCCAAGCATACACAGG
GCGGCACAGTTATGCAGGCAGCCGCGTCACTCGCAGGCCAAGTCACCCTT
CCTGCCGACGATGAACCTTTCCCTTCCCAACCCTCGCCACCACGGCATCC
CCCGCTCACCGCTGTCCCATCCCCAGCTTCAGACGCCATGATGCCAATGC
TGGACTTGGAAGCCCCTGTCGTGGTAATGCGGCTGCCGGGCAAGCGGCCC
CGATGCAGACCTTGGAGTCCAGCAGAGGAGGCGCGGCTGACAGACGTGTG
CCAAAACTTCTGGCCGGACGTGAATTGTACGTAGAGAGACTTACCACGCC
ATGCTGTGTGTGGGGAGGTCAGTCGGAGGAAAGGTGGAATAGATGTCCTG
TGCTCACCCCCTTTACCTCACACCCAATCTTGCGCGTCCATGCCTATATA
GGGCCATTAGTAGCCGGAGAACTGGGCCGTGATGTCCGTGATTGCATCTC
ACGAAGTACCTTGCTGCATCTCCAAGATCTACGCGGCGAGGCCCCTGTGT
CATCACCGAAGGAATTCTCGCCGACACATTCGCAGCCTGCACAATCAGCA
GAACAACAATTGCAGAATGAGGATGACGACACCATGCCCACCGCGACAAG
GACAATTGGGAAAGGTTTCAAGGACAAGGGTTTTCACATAGCTTCTGGTA
GTTTACACAAAACAGAAGCCAGTAGTAATAACAGTAGTAGAAAAAGTAGT
AGTAGTAGTAGTAGGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAATTATAATAGTAGTGGTGGTGGTGGTGGTGGTGGTAGTA
GTAGTAGTAGTAGTAGCAGCAGCAGCAGCGTGATCAATAACCCATTACCT
AGCCAGGTGGTAGCTCTGGCCTTGCAGCACCAATTTCATTGGGTGGCCGT
TGGTACGTTTGTGTCTGAGATGGTGAACAACAACTTTCATATAGCCACAA
CGACTAATTGAACATATTTCTTTATCTGAGCAGGCAGAGCCCTCAAGGCC
GATCCTTGGGAGTGTTGGAAGACCTACGAGGCCTACACCCAAGGTAAGCT
CCTCCACACCCCATACTTTCTCCCTCTCTTTCCTCTCTCTATAACACCTC
CCTTGCAATAATATTTCCCTCTCCACCCTCTCCCTCCTCAACCCCCAGAA
AAAAACTTCCACAGCGATGACACTGATGCAAGTCATGGGCCCACAACCAT
TTCATCTCTTGCCGATGACGTGGCCGCATTCCTGCCGTTTGCCTCCTCCC
CCTCCTCTCTGCGAAGGAATCCTCGTGCTCCTCCCTACGACACCTTCAAC
CATCACCAGTCCCCCGTCGCATCCGCTACTACTGCAGCTGTTACTACTGG
AGGCGAGGATGACAAGGGCAGCAATAACCGCAGCAACATATGCAGCCCCA
TCTCTCCCCCCCCTTCTGCGCTTTCTCCACTCATGGGAGCAGGCGGTCCT
TCCTTCCTCCTCCATCACTTCCCTCGACCCAACCCACGGTCACGGCTCTC
CGTTTCTCCCCAGGCCCCTGCTAGCAGCACCGCAACTACCACTATCACCA
CCCCTGCTGCCTCCTTCCTTCGTTCCTTCTCTACATCCTCGTTTCAGCAG
CCAGGCGTAAGCCCCAATGGAGGAGGAAAAGGGGGAGGAGGAGAAGGAGA
AACACAAATGCATCAGCCTGGAGGTCTGCAAGACAGTGTATATAGCACAT
TTTCTGGGATGGGGGGAGGAGGTGGAGGAGGGGCATCCATTTTCTTGCCA
GGTTCTGAAAGCATGAGCTTGTCGATGGTTCAATCGGCCATGTTGGACAT
GCCCTCTCTTTATCTCGGGCAATCCACCGCATTTGGTGCGGGCGCTTCTA
CATTTTTGGTCGGGGGGGGTTCGACCCTCTCTCCTCCCGGTGCTGCTGGT
GTAGGTGCGCCTGGCGCTGATGTTGATGGCGGTGGTCCAGACGATCTCCT
GCCACCGTTCCCCCCTCATACAGCCCCTCCATTTCTATCATCCTCCCCTG
TGCTTCAACCATGGCCACGAGGCCTGACTGGACCGACGCACGCGCTTATA
CCGTCGACCATTATTGAAGGGTCGGAAGCCGGCGGCTGTAGCACAGGTAC
TTTGGACCAGTCGGAATTGAAAAAATAGACAGTAGAACAGAAGTGCAGGA
ATCAAAGTCAATTGTAGGAATGTCACATCAAAAGCTTTCTTGT

Coding sequence (CDS) from alignment at chr1:1257815..1261057-

>NO01G04760.1 ID=NO01G04760.1|Name=NO01G04760.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr1:1257815..1261057- (Nannochloropsis oceanica)
ATGCAGGCAGCCGCGTCACTCGCAGGCCAAGTCACCCTTCCTGCCGACGA
TGAACCTTTCCCTTCCCAACCCTCGCCACCACGGCATCCCCCGCTCACCG
CTGTCCCATCCCCAGCTTCAGACGCCATGATGCCAATGCTGGACTTGGAA
GCCCCTGTCGTGGTAATGCGGCTGCCGGGCAAGCGGCCCCGATGCAGACC
TTGGAGTCCAGCAGAGGAGGCGCGGCTGACAGACGTGTGCCAAAACTTCT
GGCCGGACGTGAATTGGCCATTAGTAGCCGGAGAACTGGGCCGTGATGTC
CGTGATTGCATCTCACGAAGTACCTTGCTGCATCTCCAAGATCTACGCGG
CGAGGCCCCTGTGTCATCACCGAAGGAATTCTCGCCGACACATTCGCAGC
CTGCACAATCAGCAGAACAACAATTGCAGAATGAGGATGACGACACCATG
CCCACCGCGACAAGGACAATTGGGAAAGGTTTCAAGGACAAGGGTTTTCA
CATAGCTTCTGGTAGTTTACACAAAACAGAAGCCAGTAGTAATAACAGTA
GTAGAAAAAGTAGTAGTAGTAGTAGTAGGAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAATTATAATAGTAGTGGTGGTGGTGG
TGGTGGTGGTAGTAGTAGTAGTAGTAGTAGCAGCAGCAGCAGCGTGATCA
ATAACCCATTACCTAGCCAGGTGGTAGCTCTGGCCTTGCAGCACCAATTT
CATTGGGTGGCCGTTGGCAGAGCCCTCAAGGCCGATCCTTGGGAGTGTTG
GAAGACCTACGAGGCCTACACCCAAGAAAAAAACTTCCACAGCGATGACA
CTGATGCAAGTCATGGGCCCACAACCATTTCATCTCTTGCCGATGACGTG
GCCGCATTCCTGCCGTTTGCCTCCTCCCCCTCCTCTCTGCGAAGGAATCC
TCGTGCTCCTCCCTACGACACCTTCAACCATCACCAGTCCCCCGTCGCAT
CCGCTACTACTGCAGCTGTTACTACTGGAGGCGAGGATGACAAGGGCAGC
AATAACCGCAGCAACATATGCAGCCCCATCTCTCCCCCCCCTTCTGCGCT
TTCTCCACTCATGGGAGCAGGCGGTCCTTCCTTCCTCCTCCATCACTTCC
CTCGACCCAACCCACGGTCACGGCTCTCCGTTTCTCCCCAGGCCCCTGCT
AGCAGCACCGCAACTACCACTATCACCACCCCTGCTGCCTCCTTCCTTCG
TTCCTTCTCTACATCCTCGTTTCAGCAGCCAGGCGTAAGCCCCAATGGAG
GAGGAAAAGGGGGAGGAGGAGAAGGAGAAACACAAATGCATCAGCCTGGA
GGTCTGCAAGACAGTGTATATAGCACATTTTCTGGGATGGGGGGAGGAGG
TGGAGGAGGGGCATCCATTTTCTTGCCAGGTTCTGAAAGCATGAGCTTGT
CGATGGTTCAATCGGCCATGTTGGACATGCCCTCTCTTTATCTCGGGCAA
TCCACCGCATTTGGTGCGGGCGCTTCTACATTTTTGGTCGGGGGGGGTTC
GACCCTCTCTCCTCCCGGTGCTGCTGGTGTAGGTGCGCCTGGCGCTGATG
TTGATGGCGGTGGTCCAGACGATCTCCTGCCACCGTTCCCCCCTCATACA
GCCCCTCCATTTCTATCATCCTCCCCTGTGCTTCAACCATGGCCACGAGG
CCTGACTGGACCGACGCACGCGCTTATACCGTCGACCATTATTGAAGGGT
CGGAAGCCGGCGGCTGTAGCACAGGTACTTTGGACCAGTCGGAATTGAAA
AAATAG

Synonyms

Publications