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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:953688..955977 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03600.1 vs.
Match: EWM29279.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana]) HSP 1 Score: 356.7 bits (914), Expect = 7.200e-95 Identity = 182/198 (91.92%), Postives = 186/198 (93.94%), Query Frame = 0
Query: 55 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFDTG 253
MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAA+RKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP ASTPEMG PA+PDPTLPPTGPGMLS F GG GG + SGS+ PSYADDP AP TGGGFDTG
Sbjct: 1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSF-GGSSFGGVEESGSANPSYADDPSAPGTGGGFDTG 197
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC AAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGCCGTATGGGGACTCTG CTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTACGAAAGAAGGAGGATC CTTGGAATGCAATCCTATCAGGCGCTTGCACCGGCGGTCTTCTGGCGATA AGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGTGATTGGTGGTTTGGT CCTTGCCATGATCGAGGGTGCTTCGATTGCGATCACGAAGTTTTTCGCTC CTCCGGCCTCGACTCCCGAAATGGGCGGGCCGGCCATGCCCGACCCGACT CTTCCACCCACCGGTCCGGGTATGCTTTCGGGCTTTGGTGGTGGCGGTGG GGGCGGGGGGTATGATGGGAGTGGTTCGTCGACTCCGTCTTATGCTGATG ATCCTGATGCGCCCTCGACAGGCGGCGGATTTGACACGGGCGTGAGTGGA AGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGAGGGGGAGGGGCAGGAGG GATGGGGGGAGGGTACTCGTCAGTACCAGAGCCGAGTGGAGGGGGAGGAG GAAGTGGATGGTTTGGAGGAATGTTCGGTGGGAGTAAGTGATGGAGTACA GAGGAGGGACGGAGGCACAGAATAACACAATTTTGGGTTGGAATGGTTGA GATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGGCCATTCTTGACAAAGTT GGGTGGAAATACAGAGAAGAAAATGAAAATGCTGTGATCTATGTTGAAAA TAGCAACAGAGAGCTTTGTCGTGGTTATGTGTGCTGGATCGGTTAATAAT GCGATTGTGGGTGGGGCAGTGGTCATGGCTAATTTAGTTGGGTGTCCACA TTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAAATGGGAAAGAAGAAAGT AAAGCAAGTTTAAACAAGGACAG back to topprotein sequence of NO01G03600.1 >NO01G03600.1-protein ID=NO01G03600.1-protein|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp MHHSTPLLPSLPHFPQKQGQAGQAAPPAAAPVATATGEVASAVCSSSSAS SRSRMEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRG GISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTG GLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPA MPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFD TGVSGSWGGDGGGGGGGGGAGGMGGGYSSVPEPSGGGGGSGWFGGMFGGS K* back to topmRNA from alignment at chr1:953688..955977+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at chr1:953688..955977+ (Nannochloropsis oceanica) GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA
GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC
AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG
TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC
AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT
TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA
TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG
CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC
CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT
CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG
GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG
TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG
GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC
CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG
TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC
AAGGCGCGGGCGCCGCTTGTTGGGGGTAGGTGTTAGGCTGGAGATATGTT
TGGGGAGGGCTGGGACGATTGTGGTACAGCTTATAGCCTGGTTGAGATGC
TTTCATGCTCCTGGTACCTCTTGACATGGTGCTTATGGGTTTACCGGAAA
TAAGGGGGATAAATGGGGAATGTGGTCGTGAAAGAGAGATTGCGTTGGGT
TATGCGTGCATTGTGTCTACAATATTCCTGCTCCGTACTGCCACGACACT
CATTCATCTTTCTCTCTCCTGGCCTTACGTTCAATTACGTTTAACAGGTG
CTTTTGCCGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCG
GCTGTACGAAAGAAGGTTCGTTTAATCTGAGGGTTGTAGCGGGTAGTCCC
TCAACCGCCTTTCTCTCATGCCTTGGTTTTCTCATTTATATTCACCTTTG
AATAACCACAGGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACC
GGCGGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGC
AGTGATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGA
TCACGAAGGTAGGTGAGAGAGGAAGGGAGAAGAAGGGATATAGAACGTTT
GACAATATGGAGGAGAAGAAGAGGGAGAAAGAGAAGGATAAAAAGATGAG
AGGCAGAGTTGTAGGCATGGGAGGAAGAAAGCAAAACCAGACCATCGAGG
AGACCGTGTGACTGATTCATTTTTTTATCCCCCCTTCCCTCCTTCCCTCC
TTCCCTCCCCTCACTTGACATCAATCCTTTTTCCTCGACCTTCCCCTCCA
CAAACAGTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGG
CCATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGC
TTTGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGAC
TCCGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTG
ACACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGA
GGGGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCC
GAGTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGA
GTAAGTGATGGAGTACAGAGGAGGGACGGAGGCACAGAATAACACAATTT
TGGGTTGGAATGGTTGAGATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGG
CCATTCTTGACAAAGTTGGGTGGAAATACAGAGAAGAAAATGAAAATGCT
GTGATCTATGTTGAAAATAGCAACAGAGAGCTTTGTCGTGGTTATGTGTG
CTGGATCGGTTAATAATGCGATTGTGGGTGGGGCAGTGGTCATGGCTAAT
TTAGTTGGGTGTCCACATTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAA
ATGGGAAAGAAGAAAGTAAAGCAAGTTTAAACAAGGACAG back to topCoding sequence (CDS) from alignment at chr1:953688..955977+ >NO01G03600.1 ID=NO01G03600.1|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr1:953688..955977+ (Nannochloropsis oceanica) ATGCATCACTCAACTCCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAA GCAGGGGCAAGCCGGGCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAA CAGCAACAGGAGAAGTTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGC AGCAGGAGCAGGATGGAGGGCCGGGAACCATGCCCGTATCGCATTGTCGA CGATGTGGGTGGAGCCTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGC ACTACTTCAAGGGTGTGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGA GGCATTTCGTCTGTCAAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGC CGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTAC GAAAGAAGGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACCGGC GGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGT GATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGATCA CGAAGTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGGCC ATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGCTT TGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGACTC CGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTGAC ACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGAGG GGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCCGA GTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGAGT AAGTGA back to top
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