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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:899507..902935 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03450.1 vs.
Match: EWM29290.1 (Transmembrane transporter protein, chloroquine resistant [Nannochloropsis gaditana]) HSP 1 Score: 813.5 bits (2100), Expect = 3.700e-232 Identity = 420/525 (80.00%), Postives = 462/525 (88.00%), Query Frame = 0
Query: 1 MVDEGTPLRLSVSTSTTTASSSNTPGGGGTTPTRRPSFLTSKPPPSRPEEPETAVKKTSKAVKLAIYVFASTFTAAANAVWFKKMLNAYRPNFEFFGNQFNVFLYVLMAAAVVVHKRLRHGAHWWHKQDLPLNVLCFMGFLDATGSILSTMGGAYTAGAVQILLNQVIIPMTLALSFIFLGQRFTGAQTLGALTIFIGAGIAVVPSFMPRKARTADSTSSSVVDGPPTSTVTGVLLFFSSILPGAFSNVYKEWGFAQYHVDLYYLTTSVSAIQVLLGFVFLPALQLPAFGGVPLKSIPQQFTLGFQCFRGINTLPGDDCKDAWSTMWIYVLVNFLFNVLQLLITKHGGATLLVISAALALPVTNFAFCMPWIMGEDTEPFNPYDAVALVVVLLGFLLYSAWDDFVDRH-KQRKRLPMQFSAGSVMYMRERADSDPSTPGYTPLRVEPPKRRGSIDLQVNRSATNEGGSNGNGFGSRLLTPSKAIPILLQQQQQRRRGEAQGGVGVGGGYSYQINVVGEVVGTVSI 525
M DE TPLR ++STS T+SS T GTTP RRPSFL SK PP P EPETA KKTSKAVKLAIYVFASTFTAAANAVWFKKMLNAYRPNFEFFGNQFNVFLYVL+AA VV+HKR+R+GAHWWHKQDLPL+VLCFMGFLDATGSILSTMGGAYTAGAVQ LLNQVIIPMTLALSF+ LGQRFTGAQTLGALTIFIGAGIA+VPSF+ K A S S +GPPT+T+TGVLLFFSSILPGAFSNVYKEWGFAQ+HVDLYYLTT VSAIQVL GF FLPALQ+P FGG+PL+ IPQQFTLGF+CFRGINTLPGDDCKDA+ TMW+YVL+NFLFNVLQLLITKHGGATLLVISAALALPVTNFAF M WIMGEDTEPFNP+DAVAL VVL+GFLLYSAWDD VDR KQRKRLP+QF+AGSVMY+RERADSDPSTPGYTP+RVEPP+RRGSID+Q+NR+ +G + G +RLL PSKA+PILLQQ+QQRRR EA GG+ G SYQI++V + VGTVS+
Sbjct: 1 MADEETPLRPAISTSAGTSSS--TASTAGTTPIRRPSFLLSKLPPPPPLEPETAAKKTSKAVKLAIYVFASTFTAAANAVWFKKMLNAYRPNFEFFGNQFNVFLYVLLAALVVLHKRVRYGAHWWHKQDLPLSVLCFMGFLDATGSILSTMGGAYTAGAVQTLLNQVIIPMTLALSFLCLGQRFTGAQTLGALTIFIGAGIAIVPSFLAGKGARAGSGSG---EGPPTTTLTGVLLFFSSILPGAFSNVYKEWGFAQFHVDLYYLTTFVSAIQVLFGFAFLPALQVPIFGGMPLREIPQQFTLGFKCFRGINTLPGDDCKDAFLTMWMYVLINFLFNVLQLLITKHGGATLLVISAALALPVTNFAFSMTWIMGEDTEPFNPFDAVALAVVLVGFLLYSAWDDLVDRRKKQRKRLPIQFAAGSVMYLRERADSDPSTPGYTPIRVEPPRRRGSIDVQLNRAPHPDGTNKGISASTRLLAPSKAVPILLQQKQQRRREEAGGGLAPGRPSSYQIDIVSDEVGTVSL 520
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03450.1 ID=NO01G03450.1|Name=NO01G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3226bp TCTCCAAATTTTCGTTCCCCCCACAACCTTGCAACCGGCGCATCGGTCGT AGCCTTGGCAACAAGGTTATGAGGCACAGGAGGGTGAAATTATTTCCGTC AAACCTTTGTTGGTTTCATAGATTGCTTTACAATTCGTTGTTGTGACAAA TGGGAAGAGGTAGGACTCCATTTCCACAGTCCATAAGACCTCAGCGCCCT GGTCATTGGGTTCGATGTTTTGAACGGTACAGTGTCGGACTGCTTCGGCA CGCGCCACAAAAAGCCTTCCTCTCAAATAAAAAAAGTCAAGTTGACCTCT TGCCTCAAAGTGTCCCCCTCCCCCCTCCAACAATGATAATAGAAGGGCAC GCATCCTTGAATCATTTTTTTAAATTGAATTTTCAGGCATTAACATGCGG GGTCGGCGTCGGCCGACGGGGAAAAAAACAACGTTGAAGATGTGATGTAC ACCATACCCAGTGTTCCACTGGTGGTGCTCAACCCAGCAGGCCTAGCCTA CGTACCACAAAAACAACTCATAATCAACGCTTACAGACGCCACGGAACAT TTTCAACACAAGGGGCATGATGGACATCCAAATCGAGCGGTGCGAGCGCT TTTAGCATCATCCGTCGCCCTCGCGGCACACCATCTTCCACACGAAATGC GCCCAGTGGCCAAGGGCTGCATGGCCTATTAGGAGAAGACCACGATAATG GCATCGCAGCATTTGTCCTGACTGCTCTTTTTGGCTGACGGCACCATCTA TTGAGGATGGCCAATACTGCCTGCTGCGCGCCGCTGCAATCCCCACAGGC GGTGATAACCCTCCGATAGATGGCCCCCCACAGGAGACCAGCCCCGCGGA ATGAGAAGCAAGAGTTCCACAGGCCTTTTAGACCACGGTGGACTATTTAT GCCTGGTACTGGGCGCAAGCAATGGGCATGGCAGACCCCACCGTATTTAA TTATAAATCTTCTCTCTCTCATCTATGCGTTGAAAGCAGCCCTTGTGTCT TTTGCTTCGTGTAGAGCAAGATTTGAGTACAGTCGATATAGGTGGCAATA ATTATGAACAAAACGCTTGCTTTCCTGTTGATCTCGAAAATGTGCCCACG CTCCAATCCCAACATGCTCCACACACTCACTCAGTTGTTGGTAACTGTAT TCCTGTCCACCATCCCACACCCCTTCCGTCATATATCCCCTTTATATCCC CTTTACGTCCAACACACAGTACCGCAGCGGAAAATAGGACTATACTCGTT TTGTGTCGTACACCCAGCACGTCATGGTGGATGAAGGAACGCCTCTGCGG CTTTCGGTCTCGACGTCAACAACAACCGCCTCTAGCAGTAATACACCCGG TGGTGGTGGAACGACCCCAACCCGTCGGCCCTCCTTTCTGACCAGTAAGC CTCCACCCTCCCGCCCCGAGGAACCCGAGACGGCGGTCAAGAAAACGAGC AAGGCGGTCAAGTTGGCTATATATGTCTTTGCCTCGACATTCACCGCGGC CGCTAACGCCGTCTGGTTCAAAAAAATGCTCAACGCCTATCGACCCAATT TCGAGTTTTTCGGGAACCAATTTAATGTCTTCCTCTACGTCCTCATGGCC GCTGCCGTCGTTGTGCACAAGCGCCTCCGACACGGCGCACACTGGTGGCA CAAGCAAGACCTTCCCCTGAACGTGCTGTGTTTTATGGGTTTTCTAGACG CGACTGGTTCCATTCTGTCGACGATGGGCGGCGCCTACACAGCTGGGGCG GTACAGATACTACTGAATCAAGTAATCATCCCCATGACGCTTGCCCTATC GTTCATTTTCCTTGGGCAACGCTTCACGGGCGCACAAACCCTTGGAGCGC TCACCATTTTCATCGGCGCCGGCATCGCGGTTGTCCCTTCGTTTATGCCC AGAAAGGCCAGGACTGCGGACAGCACTAGCAGCAGTGTTGTTGATGGCCC TCCGACAAGCACGGTTACGGGAGTCTTGTTGTTTTTTTCTAGTATCTTGC CCGGGGCCTTTTCCAACGTGTACAAAGAGTGGGGCTTCGCTCAATACCAC GTTGACCTCTACTATCTCACCACCAGCGTCTCGGCTATCCAGGTGCTTCT GGGTTTTGTGTTCTTGCCCGCTTTGCAGCTGCCGGCGTTTGGAGGAGTGC CGTTGAAAAGCATACCACAGCAATTCACATTGGGGTTTCAATGTTTCCGG GGGATAAACACCCTCCCCGGTGATGACTGCAAAGACGCCTGGAGCACCAT GTGGATTTACGTCTTGGTCAATTTCCTGTTTAATGTGCTGCAGCTTTTGA TTACCAAGCATGGTGGGGCCACCTTGTTGGTGATCTCGGCGGCCTTGGCG TTACCAGTGACTAACTTTGCGTTTTGCATGCCTTGGATTATGGGAGAGGA TACAGAACCTTTCAACCCTTATGATGCTGTCGCTCTTGTTGTGGTCCTCC TCGGCTTCCTCTTATACAGCGCCTGGGATGATTTCGTGGACCGTCACAAA CAGCGCAAGAGGCTGCCCATGCAATTTTCTGCTGGCTCGGTCATGTACAT GCGGGAAAGGGCTGACTCGGATCCTTCTACACCTGGCTATACGCCTCTTC GCGTTGAGCCACCCAAGCGTCGAGGTAGCATTGATTTACAAGTCAATCGA TCGGCGACCAATGAGGGTGGGAGCAACGGGAATGGATTTGGGTCTCGCTT ATTGACGCCATCTAAAGCGATCCCGATTCTCTTGCAGCAGCAGCAGCAGC GACGGCGGGGGGAGGCGCAGGGAGGGGTGGGAGTTGGGGGAGGCTACTCG TATCAAATAAATGTGGTGGGAGAGGTGGTTGGGACTGTAAGTATATAGAA GACGAGAGACGAGGTAGAGCATGAGAAACGATGAGCGGTGGGAGGGAGAG TAAAGTAGTTGATGGAAGAGAAAGAAACGTTGAATCCAAATTTTTGTGAA ATAAGAGATGACAGAGTGTGAGGATTTGTGTTTTCGTCCTCTTTAAATAA AGGCCGGGGATATTGTAGCGGCCCTCATCGCTCCCACAAAACAGATGGCT TTTCATGTAAATAATGAAACTGAGTGAATGTAGTGAGAGTATGAGTGAAA AAAGAGAAGGTAGGATGAGGAGAAGAAGGATCCAATACCGGTCTAACAGA GCCAAAGCAGCCTCGAGAATGAAATTTATAGTAAGAAGAGACCAATTAAG AAAGAATGGATAACGAATTTAAAGCA back to topprotein sequence of NO01G03450.1 >NO01G03450.1-protein ID=NO01G03450.1-protein|Name=NO01G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp MVDEGTPLRLSVSTSTTTASSSNTPGGGGTTPTRRPSFLTSKPPPSRPEE PETAVKKTSKAVKLAIYVFASTFTAAANAVWFKKMLNAYRPNFEFFGNQF NVFLYVLMAAAVVVHKRLRHGAHWWHKQDLPLNVLCFMGFLDATGSILST MGGAYTAGAVQILLNQVIIPMTLALSFIFLGQRFTGAQTLGALTIFIGAG IAVVPSFMPRKARTADSTSSSVVDGPPTSTVTGVLLFFSSILPGAFSNVY KEWGFAQYHVDLYYLTTSVSAIQVLLGFVFLPALQLPAFGGVPLKSIPQQ FTLGFQCFRGINTLPGDDCKDAWSTMWIYVLVNFLFNVLQLLITKHGGAT LLVISAALALPVTNFAFCMPWIMGEDTEPFNPYDAVALVVVLLGFLLYSA WDDFVDRHKQRKRLPMQFSAGSVMYMRERADSDPSTPGYTPLRVEPPKRR GSIDLQVNRSATNEGGSNGNGFGSRLLTPSKAIPILLQQQQQRRRGEAQG GVGVGGGYSYQINVVGEVVGTVSI* back to topmRNA from alignment at chr1:899507..902935- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03450.1 ID=NO01G03450.1|Name=NO01G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3429bp|location=Sequence derived from alignment at chr1:899507..902935- (Nannochloropsis oceanica) TCTCCAAATTTTCGTTCCCCCCACAACCTTGCAACCGGCGCATCGGTCGT
AGCCTTGGCAACAAGGTTATGAGGCACAGGAGGGTGAAATTATTTCCGTC
AAACCTTTGTTGGTTTCATAGATTGCTTTACAATTCGTTGTTGTGACAAA
TGGGAAGAGGTAGGACTCCATTTCCACAGTCCATAAGACCTCAGCGCCCT
GGTCATTGGGTTCGATGTTTTGAACGGTACAGTGTCGGACTGCTTCGGCA
CGCGCCACAAAAAGCCTTCCTCTCAAATAAAAAAAGTCAAGTTGACCTCT
TGCCTCAAAGTGTCCCCCTCCCCCCTCCAACAATGATAATAGAAGGGCAC
GCATCCTTGAATCATTTTTTTAAATTGAATTTTCAGGCATTAACATGCGG
GGTCGGCGTCGGCCGACGGGGAAAAAAACAACGTTGAAGATGTGATGTAC
ACCATACCCAGTGTTCCACTGGTGGTGCTCAACCCAGCAGGCCTAGCCTA
CGTACCACAAAAACAACTCATAATCAACGCTTACAGACGCCACGGAACAT
TTTCAACACAAGGGGCATGATGGACATCCAAATCGAGCGGTGCGAGCGCT
TTTAGCATCATCCGTCGCCCTCGCGGCACACCATCTTCCACACGAAATGC
GCCCAGTGGCCAAGGGCTGCATGGCCTATTAGGAGAAGACCACGATAATG
GCATCGCAGCATTTGTCCTGACTGCTCTTTTTGGCTGACGGCACCATCTA
TTGAGGATGGCCAATACTGCCTGCTGCGCGCCGCTGCAATCCCCACAGGC
GGTGATAACCCTCCGATAGATGGCCCCCCACAGGAGACCAGCCCCGCGGA
ATGAGAAGCAAGAGTTCCACAGGCCTTTTAGACCACGGTGGACTATTTAT
GCCTGGTACTGGGCGCAAGCAATGGGCATGGCAGACCCCACCGTATTTAA
TTATAAATCTTCTCTCTCTCATCTATGCGTTGAAAGCAGCCCTTGTGTCT
TTTGCTTCGTGTAGAGCAAGATTTGAGTACAGTCGATATAGGTGGCAATA
ATTATGAACAAAACGCTTGCTTTCCTGTTGATCTCGAAAATGTGCCCACG
CTCCAATCCCAACATGCTCCACACACTCACTCAGTTGTTGGTAACTGTAT
TCCTGTCCACCATCCCACACCCCTTCCGTCATATATCCCCTTTATATCCC
CTTTACGTCCAACACACAGTACCGCAGCGGAAAATAGGACTATACTCGTT
TTGTGTCGTACACCCAGCACGTCATGGTGGATGAAGGAACGCCTCTGCGG
CTTTCGGTCTCGACGTCAACAACAACCGCCTCTAGCAGTAATACACCCGG
TGGTGGTGGAACGACCCCAACCCGTCGGCCCTCCTTTCTGACCAGTAAGC
CTCCACCCTCCCGCCCCGAGGAACCCGAGACGGCGGTCAAGAAAACGAGC
AAGGCGGTCAAGTTGGCTATATATGTCTTTGGTAGGTTTTCAATTTTCTT
CAATTCGTCTCTCGTTCCTGCCGCTTGCTTCTAGCAACCTCAACTTTTAG
CACCACGACCCGACATATATCACGAGCTCGGCCGTTTCGGCATAATTAGA
TCTCTTGTTCATGAACCTCTCATCTTGTTTTCGGTCTCATTCATTTTCAT
CTCACTCTTCTTTTCTCCTCCACGCTAAACACAGCCTCGACATTCACCGC
GGCCGCTAACGCCGTCTGGTTCAAAAAAATGCTCAACGCCTATCGACCCA
ATTTCGAGTTTTTCGGGAACCAATTTAATGTCTTCCTCTACGTCCTCATG
GCCGCTGCCGTCGTTGTGCACAAGCGCCTCCGACACGGCGCACACTGGTG
GCACAAGCAAGACCTTCCCCTGAACGTGCTGTGTTTTATGGGTTTTCTAG
ACGCGACTGGTTCCATTCTGTCGACGATGGGCGGCGCCTACACAGCTGGG
GCGGTACAGATACTACTGAATCAAGTAATCATCCCCATGACGCTTGCCCT
ATCGTTCATTTTCCTTGGGCAACGCTTCACGGGCGCACAAACCCTTGGAG
CGCTCACCATTTTCATCGGCGCCGGCATCGCGGTTGTCCCTTCGTTTATG
CCCAGAAAGGCCAGGACTGCGGACAGCACTAGCAGCAGTGTTGTTGATGG
CCCTCCGACAAGCACGGTTACGGGAGTCTTGTTGTTTTTTTCTAGTATCT
TGCCCGGGGCCTTTTCCAACGTGTACAAAGAGTGGGGCTTCGCTCAATAC
CACGTTGACCTCTACTATCTCACCACCAGCGTCTCGGCTATCCAGGTGCT
TCTGGGTTTTGTGTTCTTGCCCGCTTTGCAGCTGCCGGCGTTTGGAGGAG
TGCCGTTGAAAAGCATACCACAGCAATTCACATTGGGGTTTCAATGTTTC
CGGGGGATAAACACCCTCCCCGGTGATGACTGCAAAGACGCCTGGAGCAC
CATGTGGATTTACGTCTTGGTCAATTTCCTGTTTAATGTGCTGCAGCTTT
TGATTACCAAGCATGGTGGGGCCACCTTGTTGGTGATCTCGGCGGCCTTG
GCGTTACCAGTGACTAACTTTGCGTTTTGCATGCCTTGGATTATGGGAGA
GGATACAGAACCTTTCAACCCTTATGATGCTGTCGCTCTTGTTGTGGTCC
TCCTCGGCTTCCTCTTATACAGCGCCTGGGATGATTTCGTGGACCGTCAC
AAACAGCGCAAGAGGCTGCCCATGCAATTTTCTGCTGGCTCGGTCATGTA
CATGCGGGAAAGGGCTGACTCGGATCCTTCTACACCTGGCTATACGCCTC
TTCGCGTTGAGCCACCCAAGCGTCGAGGTAGCATTGATTTACAAGTCAAT
CGATCGGCGACCAATGAGGGTGGGAGCAACGGGAATGGATTTGGGTCTCG
CTTATTGACGCCATCTAAAGCGATCCCGATTCTCTTGCAGCAGCAGCAGC
AGCGACGGCGGGGGGAGGCGCAGGGAGGGGTGGGAGTTGGGGGAGGCTAC
TCGTATCAAATAAATGTGGTGGGAGAGGTGGTTGGGACTGTAAGTATATA
GAAGACGAGAGACGAGGTAGAGCATGAGAAACGATGAGCGGTGGGAGGGA
GAGTAAAGTAGTTGATGGAAGAGAAAGAAACGTTGAATCCAAATTTTTGT
GAAATAAGAGATGACAGAGTGTGAGGATTTGTGTTTTCGTCCTCTTTAAA
TAAAGGCCGGGGATATTGTAGCGGCCCTCATCGCTCCCACAAAACAGATG
GCTTTTCATGTAAATAATGAAACTGAGTGAATGTAGTGAGAGTATGAGTG
AAAAAAGAGAAGGTAGGATGAGGAGAAGAAGGATCCAATACCGGTCTAAC
AGAGCCAAAGCAGCCTCGAGAATGAAATTTATAGTAAGAAGAGACCAATT
AAGAAAGAATGGATAACGAATTTAAAGCA back to topCoding sequence (CDS) from alignment at chr1:899507..902935- >NO01G03450.1 ID=NO01G03450.1|Name=NO01G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr1:899507..902935- (Nannochloropsis oceanica) ATGGTGGATGAAGGAACGCCTCTGCGGCTTTCGGTCTCGACGTCAACAAC AACCGCCTCTAGCAGTAATACACCCGGTGGTGGTGGAACGACCCCAACCC GTCGGCCCTCCTTTCTGACCAGTAAGCCTCCACCCTCCCGCCCCGAGGAA CCCGAGACGGCGGTCAAGAAAACGAGCAAGGCGGTCAAGTTGGCTATATA TGTCTTTGCCTCGACATTCACCGCGGCCGCTAACGCCGTCTGGTTCAAAA AAATGCTCAACGCCTATCGACCCAATTTCGAGTTTTTCGGGAACCAATTT AATGTCTTCCTCTACGTCCTCATGGCCGCTGCCGTCGTTGTGCACAAGCG CCTCCGACACGGCGCACACTGGTGGCACAAGCAAGACCTTCCCCTGAACG TGCTGTGTTTTATGGGTTTTCTAGACGCGACTGGTTCCATTCTGTCGACG ATGGGCGGCGCCTACACAGCTGGGGCGGTACAGATACTACTGAATCAAGT AATCATCCCCATGACGCTTGCCCTATCGTTCATTTTCCTTGGGCAACGCT TCACGGGCGCACAAACCCTTGGAGCGCTCACCATTTTCATCGGCGCCGGC ATCGCGGTTGTCCCTTCGTTTATGCCCAGAAAGGCCAGGACTGCGGACAG CACTAGCAGCAGTGTTGTTGATGGCCCTCCGACAAGCACGGTTACGGGAG TCTTGTTGTTTTTTTCTAGTATCTTGCCCGGGGCCTTTTCCAACGTGTAC AAAGAGTGGGGCTTCGCTCAATACCACGTTGACCTCTACTATCTCACCAC CAGCGTCTCGGCTATCCAGGTGCTTCTGGGTTTTGTGTTCTTGCCCGCTT TGCAGCTGCCGGCGTTTGGAGGAGTGCCGTTGAAAAGCATACCACAGCAA TTCACATTGGGGTTTCAATGTTTCCGGGGGATAAACACCCTCCCCGGTGA TGACTGCAAAGACGCCTGGAGCACCATGTGGATTTACGTCTTGGTCAATT TCCTGTTTAATGTGCTGCAGCTTTTGATTACCAAGCATGGTGGGGCCACC TTGTTGGTGATCTCGGCGGCCTTGGCGTTACCAGTGACTAACTTTGCGTT TTGCATGCCTTGGATTATGGGAGAGGATACAGAACCTTTCAACCCTTATG ATGCTGTCGCTCTTGTTGTGGTCCTCCTCGGCTTCCTCTTATACAGCGCC TGGGATGATTTCGTGGACCGTCACAAACAGCGCAAGAGGCTGCCCATGCA ATTTTCTGCTGGCTCGGTCATGTACATGCGGGAAAGGGCTGACTCGGATC CTTCTACACCTGGCTATACGCCTCTTCGCGTTGAGCCACCCAAGCGTCGA GGTAGCATTGATTTACAAGTCAATCGATCGGCGACCAATGAGGGTGGGAG CAACGGGAATGGATTTGGGTCTCGCTTATTGACGCCATCTAAAGCGATCC CGATTCTCTTGCAGCAGCAGCAGCAGCGACGGCGGGGGGAGGCGCAGGGA GGGGTGGGAGTTGGGGGAGGCTACTCGTATCAAATAAATGTGGTGGGAGA GGTGGTTGGGACTGTAAGTATATAG back to top
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