NO01G03420.1, NO01G03420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03420.1
Unique NameNO01G03420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1162
Alignment locationchr1:894679..895945 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:894679..895945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03420.1 vs.
Match: EWM29267.1 (hypothetical protein Naga_100029g24 [Nannochloropsis gaditana])

HSP 1 Score: 431.4 bits (1108), Expect = 2.700e-117
Identity = 222/357 (62.18%), Postives = 269/357 (75.35%), Query Frame = 0 
Query:    7 VGAAGLAVSLLLVDVQAFLLSSFRPPT----------RGILSAVPIRTRPSSTIASASTMPDVRAYGNE--EEGDIEIAWFEALQAYGGDAKPYDPLLRILSSVSSWKQFRTQVENAWVTARVESDGDRGRLIFKLEAYLDALQEYMHVHTLFTEVLMPTANGCDGMFMERVRMEAFEAAQTAIRSKQEQYLATHVAFWADLAAVLRSQEDIPVGEVAKLDQVSPLPAPYGQGESGLVLLPMPSLLEWTRDELGGGVEEQVGALLLFSSVVLPALERVKKEKSRESLVEYASMWGRLWRKAGRWFGSDTESVEFLDDLYRQTGGRVETNDDVTRTGISLAGVGRVERKGMEEAWLQE 352
            V A  LAVSLLL  ++AF LS+ R  +          R ++S  P+    ++T AS +  PD+  +GN   E GD+++ WFEALQAYG D++P DPLL++L+ VSSW QF T+VEN WVT RVE + DR RL  KL  ++DALQEY+H HTLFT+VL PTANGCDGMF+ERVR EAFE+AQ+ IR KQE YLA HV FWADLAAVLRSQEDIP G VA+LDQ   LPAPYGQG+SG+V LP PSL  W  DE+GGGVE+QVGA+LL  + VLPALE  K+E+S+ES   YA +WGRLWRKAG WFG+D ES  FL++LYR TGGRV  NDD +RTG+SLAGVG VER+GME+AWLQE
Sbjct:   11 VPAVTLAVSLLL-QIEAFPLSTARAGSVFKGPRLRLKRLLVSGAPVAAPVTATAASVA--PDLE-FGNSGIEGGDVDVEWFEALQAYGRDSRPSDPLLKLLAGVSSWMQFETRVENEWVTNRVECEEDRDRLKMKLGDFMDALQEYVHAHTLFTQVLSPTANGCDGMFLERVRFEAFESAQSTIRRKQEGYLAAHVRFWADLAAVLRSQEDIPQGGVAQLDQTIALPAPYGQGDSGIVSLPPPSLFPWALDEVGGGVEDQVGAVLLLKAAVLPALETAKRERSKESFSRYAKLWGRLWRKAGTWFGADPESSAFLEELYRSTGGRVAMNDDSSRTGLSLAGVGPVERRGMEDAWLQE 363
The following BLAST results are available for this feature:
BLAST of NO01G03420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29267.12.700e-11762.18hypothetical protein Naga_100029g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03420NO01G03420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03420.1NO01G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03420.1.cds1NO01G03420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03420.1.cds2NO01G03420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03420.1 ID=NO01G03420.1|Name=NO01G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp
ATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGAGCCTCCT
CCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCACCGACAA
GAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCCAGCAGCACAATC
GCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGGTAACGAGGAGGA
GGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGGCATATGGGGGCG
ACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCGAGCGTCTCGTCG
TGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGTGACCGCCCGGGT
TGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGCTTGAAGCGTACC
TAGATGCATTGCAAGAGTATATGCATGTGCACACGCTTTTTACCGAAGTA
CTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCATGGAGCGGGTACG
AATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAAGCAAGCAAGAGC
AGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTCGCCGCAGTCTTG
CGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAAGTTGGATCAGGT
CTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTGGATTAGTGCTGT
TGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAATTGGGGGGAGGA
GTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATCGGTGGTTTTACC
GGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGAGTTTGGTGGAGT
ATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGGAGGTGGTTTGGG
AGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTACAGGCAGACAGG
GGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGGGCATAAGCCTCG
CTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAGGCTTGGTTGCAG
GAGTAGAAGAAGACGTGGATGGGAGTCGCGCAGGATTGGCGTTATTGCCA
AATCAACCATGTGCAAAAGTAAAGGGGGAAAAACGCAGACAACAGCAATA
ACAACCACACCA
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protein sequence of NO01G03420.1

>NO01G03420.1-protein ID=NO01G03420.1-protein|Name=NO01G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MSTLRRVGAAGLAVSLLLVDVQAFLLSSFRPPTRGILSAVPIRTRPSSTI
ASASTMPDVRAYGNEEEGDIEIAWFEALQAYGGDAKPYDPLLRILSSVSS
WKQFRTQVENAWVTARVESDGDRGRLIFKLEAYLDALQEYMHVHTLFTEV
LMPTANGCDGMFMERVRMEAFEAAQTAIRSKQEQYLATHVAFWADLAAVL
RSQEDIPVGEVAKLDQVSPLPAPYGQGESGLVLLPMPSLLEWTRDELGGG
VEEQVGALLLFSSVVLPALERVKKEKSRESLVEYASMWGRLWRKAGRWFG
SDTESVEFLDDLYRQTGGRVETNDDVTRTGISLAGVGRVERKGMEEAWLQ
E*
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mRNA from alignment at chr1:894679..895945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03420.1 ID=NO01G03420.1|Name=NO01G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at chr1:894679..895945+ (Nannochloropsis oceanica)
ATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGAGCCTCCT
CCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCACCGACAA
GAGGTAAGCCAAGCACCGTTTGTCCTCCTGCCTCCCTCCCACCCCTAGCA
ACGGGGGGCAAGCACCCGCCTTCTTTCGCCCTTGTCTCTTATCCCCTCGT
TCACCCAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCCAGCAGCA
CAATCGCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGGTAACGAG
GAGGAGGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGGCATATGG
GGGCGACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCGAGCGTCT
CGTCGTGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGTGACCGCC
CGGGTTGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGCTTGAAGC
GTACCTAGATGCATTGCAAGAGTATATGCATGTGCACACGCTTTTTACCG
AAGTACTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCATGGAGCGG
GTACGAATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAAGCAAGCA
AGAGCAGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTCGCCGCAG
TCTTGCGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAAGTTGGAT
CAGGTCTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTGGATTAGT
GCTGTTGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAATTGGGGG
GAGGAGTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATCGGTGGTT
TTACCGGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGAGTTTGGT
GGAGTATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGGAGGTGGT
TTGGGAGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTACAGGCAG
ACAGGGGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGGGCATAAG
CCTCGCTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAGGCTTGGT
TGCAGGAGTAGAAGAAGACGTGGATGGGAGTCGCGCAGGATTGGCGTTAT
TGCCAAATCAACCATGTGCAAAAGTAAAGGGGGAAAAACGCAGACAACAG
CAATAACAACCACACCA
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Coding sequence (CDS) from alignment at chr1:894679..895945+

>NO01G03420.1 ID=NO01G03420.1|Name=NO01G03420.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr1:894679..895945+ (Nannochloropsis oceanica)
ATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGAGCCTCCT
CCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCACCGACAA
GAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCCAGCAGCACAATC
GCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGGTAACGAGGAGGA
GGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGGCATATGGGGGCG
ACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCGAGCGTCTCGTCG
TGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGTGACCGCCCGGGT
TGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGCTTGAAGCGTACC
TAGATGCATTGCAAGAGTATATGCATGTGCACACGCTTTTTACCGAAGTA
CTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCATGGAGCGGGTACG
AATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAAGCAAGCAAGAGC
AGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTCGCCGCAGTCTTG
CGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAAGTTGGATCAGGT
CTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTGGATTAGTGCTGT
TGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAATTGGGGGGAGGA
GTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATCGGTGGTTTTACC
GGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGAGTTTGGTGGAGT
ATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGGAGGTGGTTTGGG
AGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTACAGGCAGACAGG
GGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGGGCATAAGCCTCG
CTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAGGCTTGGTTGCAG
GAGTAG
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Synonyms
Publications