rna6788, rna6788 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6788
Unique Name	rna6788
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1140
Alignment location	CM002469.1:502839..505975 +

Link to JBrowse

Properties


Property Name	Value
Product	neuro-oncological ventral antigen 2
Orig transcript id	gnl\|cribi\|Naga_100113g17.9975.mrna
Orig protein id	gnl\|cribi\|Naga_100113g17.9975
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:502839..505975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100113g17	gene6562	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6788	rna6788-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23909.1	cds6772	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:502839..505975+
coding sequence from alignment at CM002469.1:502839..505975+

mRNA sequence

>rna6788 ID=rna6788|Name=rna6788|organism=Nannochloropsis gaditana|type=mRNA|length=1140bp
ATGGGGTGGTCCAAGCCTTCACAGGCAAGCGGAGGCCTCTTCCGGCGACA
TCGATGTCCCGTACTAGCTATCCTCCTATGTATTTATGCAATTGTTGTCG
AATCTTTTTTGATTCCGACGTCGTCCAGGGCGACTGCGGTCCTAAGAAAA
AGAACAGGGGCTGCATTAAATTCGCAGCTAGTCCGGAAATCAACGGTACA
ACCTCGAGAGCCCCTGACTACCTCGGGCGGCAGCAGCCCGCCGGCTACCG
CTGATCCTCCCCATCCCCCTGTCGTCGCGCACGCTGTTGCTGCGGAGACC
CTTCTTCCTCCCTCCTATTTCCAAAGTCTGCCTTGGACCCGATCAATCAC
GGGCGATGGCCCGGAAACCCTGCTCTACATGCCTTTCTTAGAAGCGCAGA
TGCGGCATTTGGAGGCACAGAGGGGCTTCGTCCGTCAGCTTCCCGTTCCA
GAGAATGTGGCGTACACTCGTGCGGCGAAGAAGGCATCGCAGATGGGAAG
TTTCTGTGTGGAGACGGAGGACTTTCGAAAGATCCGCTTCACGTACATGG
ATGGTGGCAAGGGTCTACAGGTGTTCAATTCTGTGTGGTACCCCCGTTTC
GACACGGACGCCCCCATCCTCGGCATCGACCTGTTGCTCTTCGCGGGGCA
CAAGATGCTGGCCGTGGTTGATTTCCAGCCGCTCTCCCAGGAGGCGGCAT
ACAAGCAACGCTTCATCAACCAGCTTGGCCCCATCAAGGCGAAATACCCG
GCTCTGAATGAGGCCATGAGCAACCGATACTACGAGGACACGCGCTGGTT
CTCAGAGCACATGCTCTTCGGGCGCTTGAAGGAGTCGAGTCAAGTCCAGT
CCACCCTGTTCCCGGCCTTCATGGAGTATCTCACCGTTTATTCGGACACG
GTCCGGCGCTCCCGCGGATGCGTGCCGGATGCAGAGGTGGAGGAACGAGT
GGTGTCGAGACACCGTGCCTACGACGAGTACCAGCTCGTTCACGACCCCG
CCCACGGCCTCTTCACCGGCTACTTCGGCGCGCAGTTCGCCCATGACATG
CTGACCTTTCAATTCGACATGGCGGACCCGGCTTTGTTGTTGCAGAAAAA
GAAGCCCCAGCAACCGTCCCATCAGCAGAGTGGTCAGTGA

protein sequence of rna6788

>rna6788-protein ID=rna6788-protein|Name=rna6788|organism=Nannochloropsis gaditana|type=polypeptide|length=660bp
MAEPTSAETSMNHAPPVFRAEGGDTPTETSRNGKGAPGDNPEADSEFDTH
RGGSNASLAFGSELHQGENDEEAVKSPSSAAVAAPTASGKSRPPALSDNL
LHSSLANISIHSSPAHDHGMLPGASGHRGGATDVPSAVKLLVSAGLAGCL
LGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAETCVTATL
RVIKHLHASAEARSAAAAVRAVSLRAGEEGGVEDVSSKEAYREAGTRDGP
GAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHGPRS
EAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAK
DEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYS
RTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGS
EGQRGHLSRSQGLGHSQARQSQLHSHGPAPIPLSAPLSASHPLSYMHPPP
DRGPPHPPLPPFPPQHPSALHSARQAPPRHHGSGPPSGHSSPSLMPQHLL
YTGHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTL
KKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAVQQ
ASMGPLQGSY

mRNA from alignment at CM002469.1:502839..505975+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6788 ID=rna6788|Name=rna6788|organism=Nannochloropsis gaditana|type=mRNA|length=3137bp|location=Sequence derived from alignment at CM002469.1:502839..505975+ (Nannochloropsis gaditana)
ACACCACAGGGCTGCACGTGGATTTCAGAAAACCGCTCGGTGGACGGACT
TTTTGGCACGGGGGGCTGTAAAGCCGGAAGGCCGAGCAGGAGTACTGGGA
TAAAGTCTCGACGCTATCACTTGCTGCTGCGCTCGTCAAGGTAGGTTACT
GCGGAGGCGACAATCTTGAGTGCTTGACATGCGCCGAGAACCGAAGAACC
TTGGTGTAACGCAGGCAGGTGTGCTTCCGATACGCTCAAGGATGTCTTCT
ATGACCAGGAATGCCGGCGATGCCATCAGCCGGTACTTGTGTTACTTCCA
TGTCGGCCAGCCTGAAAATGCTCCATACTTCATATATTGGATGATTTCCA
CACTTTCATAGATAACTTCAATGGCGGAACCAACTAGCGCAGAGACTAGC
ATGAATCACGCTCCTCCAGGTAGGTAGATGATTGCGAGCACCGGTTTGCA
AGCACACTCTTTCAAGCCCTCCCCGGAGTTTGCGCGGCATTTGGGCTGCT
CTCCTTTCAAAAATTGTTCATTTCCTTTCGTATCTTCCTCACATCCCCCC
CATCAATCCTGGGGCCGCAGTCTTTCGTGCAGAAGGAGGCGATACGCCCA
CAGAGACAAGTCGCAACGGCAAAGGAGCACCAGGAGACAACCCGGAGGCC
GACAGCGAATTTGACACCCACAGAGGGGGTTCCAACGCGAGCCTCGCCTT
CGGAAGTGAACTACACCAAGGTGAAAACGATGAAGAGGCCGTcaagtctc
cctcctccgcggcggTCGCTGCCCCCACTGCCTCAGGCAAGAGTCGTCCA
CCCGCATTGAGCGACAATCTTCtacattcctccctcgccaacaTTAGCAT
ACATTCCTCCCCGGCTCATGACCACGGGATGCTGCCCGGCGCCAGCGGcc
acagggggggggcaacggACGTGCCGAGCGCCGTGAAGCTGCTGGTGTCG
GCGGGACTGGCAGGCTGCCTGCttggcaagggggggggcaccaTCAACGT
GCTCCAGGAGGAGACCGGGGCCCGAATCAAGCTCTCCCAGAACCAAGACT
ACTTTCCCGGGACACAGGACCGCGTGGTTCTCATatcgggggaggcggag
acgtgCGTCACCGCCACTCTCCGAGTCATCAAGCATCTGCATGCCAGCGC
CGAGGCCCGGtcggctgctgcggccgTGAGGGCGGTGTCCCTAcgggcag
gagaagagggaggcgtaGAGGACGTTTCTTCAAAAGAAGCCTACAGAGAA
GCGGGGACAAGAGACGGgcccggggcgggaggctcAGGGCGGCCAGTGCC
GGCAAAGGAAGTGCCCGGGGcctcttcgccgccctccccttcctctccct
ctccctcgttgcCGACCTCCGCAGATTCCTTTAGCGATGGCGACGAGAGC
AACAGTCATGGGCCCAGGAGCgaggcgccgggggagggcgtgggccgCGC
ATCCGCCTCGGTCAAGCTCCTGATCGCCAAGGCGGCGGGTGGGCTCGTGA
TTGGCCGTGCCGGGAGCACCATCAAAGCGCTCAACGAGGAGACCGGGACT
CGCATCCAGCTTGCGGCAAAGGACGAGGCCAGCGGGATGGTCACAGGCGA
GAGGGTCGTGACCATTGCGGGGCCCCTCCCAGGCGTTCTGCGAGGGGTGG
CCCGCCTCTTGGAGAAACTGAACGAGGAGCCCGAGCTCGCGCGCTACCAG
AACATGACCACCTCCTACTCCCGCACTGGGGCAGCCGTCCACTCCATGCA
TCCCGCcttcgacctccccacctacCAGACCCAGTCGTTCGCAGACACCC
AGatgctcttctccccccaAGGCCCGGCCAGCACCCGTGGGCACGCCCTC
AACTTGAGCCTGAGTGGGAGCGAGGGCCAGCGAGGCCACCTGTCTCGGTC
CCAGGGGCTGGGGCATAGTCAAGCCAGGCAGAGCCAGCTCCACTCGCACG
GCCCCGCCCCAATCCCGCTGTCAGCGCCCCTGTCtgcttcccaccccctc
tcctACATGCACCCCCCCCCGGATCGCGGGCCGCCCCACCCCCcgctgcc
ccccttccccccccagcaCCCTAGCGCCCTCCACAGCGCCAGGCaggctc
ctcctcggcaccaCGGCAGCGGTCCGCCGTCTGGGCactcctctccgtcc
ctcatGCCGCAGCATCTCCTTTACACGGGgcatgcccctccttcctacca
gCACatggcccctgccttcctagCGATGCAGGCAGCACAGGACGCCGCCA
CAGCCGTGCTGACCCTCCAAGTTCCCGACAAGCTGATCGGCTCCATCCTC
GGCCGGTCGGGCGTCACGCTCAAAAAGATCCAGTCCGACTCTGGGGCGCG
CATCAGCATCAGCAAACGGGGCGAGTTCGCGCCCGGGACACAGAACAGGG
TTGTGACGATCGACGGACCGGTCCAGTGCACGGAAGTGgcgagggggatg
gtggcAATGGCGGTGCAACAGGCCAGCATGGGCCCCCTGCAAGGGAGCTA
CTGAGAGAACAAGgatcgggaggaaggaggcaggagtgGTACTTGGATGT
CTGGACACGTTTTGAGTCCGAGTCCCGCACCTTCTCTTTGAGCGAGGCGG
TGCTTGGCAGGCCCTGCGAGGCTGGGAGCGGTGTGGGAGTGGGGATGGGG
CCGCGAGAGCGACGCGAAAGAGTGAGGCCCTGAGTCGTAGTTTGGTGGCC
gccggcgggaggtggaatTGAAGGCAGGGCCTACGCGGATgagggaagca
ggcaagGACGGGAGGCAGGTGTCTCGACGGGAATGACGGGGACTGCCTGG
AGGGATACGAAAGGGGGCTGTCGGCCCATGCAATCTCCCGCACGGCCTGT
TCATGCTCtactccctctcttctttctggcGGACTGCAAGGCTGTAGACG
AGAGGGCGGTGGATGAGTAAGGCTCCGTACAAGGGTCATCACCCGCAATA
CACGGGCCTTGCCCGAGAGGCTAAGCCAGCACACAGAGTAGAGAAAGCAT
CAGGTCGCCGTGGGAGGGATTCGACTGGCTCCTTCGGAAACGAACGGCAA
TGTATACGTGTAAAAATAAAGAAATGTCAGCATGCGTGATTCGCAAACGA
TATTGGTATAGCAGGAACCGCCAGACTCTACGACAAG

Coding sequence (CDS) from alignment at CM002469.1:502839..505975+

>rna6788 ID=rna6788|Name=rna6788|organism=Nannochloropsis gaditana|type=CDS|length=3966bp|location=Sequence derived from alignment at CM002469.1:502839..505975+ (Nannochloropsis gaditana)
ATGGCGGAACCAACTAGCGCAGAGACTAGCATGAATCACGCTCCTCCAGT
CTTTCGTGCAGAAGGAGGCGATACGCCCACAGAGACAAGTCGCAACGGCA
AAGGAGCACCAGGAGACAACCCGGAGGCCGACAGCGAATTTGACACCCAC
AGAGGGGGTTCCAACGCGAGCCTCGCCTTCGGAAGTGAACTACACCAAGG
TGAAAACGATGAAGAGGCCGTcaagtctccctcctccgcggcggTCGCTG
CCCCCACTGCCTCAGGCAAGAGTCGTCCACCCGCATTGAGCGACAATCTT
CtacattcctccctcgccaacaTTAGCATACATTCCTCCCCGGCTCATGA
CCACGGGATGCTGCCCGGCGCCAGCGGccacagggggggggcaacggACG
TGCCGAGCGCCGTGAAGCTGCTGGTGTCGGCGGGACTGGCAGGCTGCCTG
CttggcaagggggggggcaccaTCAACGTGCTCCAGGAGGAGACCGGGGC
CCGAATCAAGCTCTCCCAGAACCAAGACTACTTTCCCGGGACACAGGACC
GCGTGGTTCTCATatcgggggaggcggagacgtgCGTCACCGCCACTCTC
CGAGTCATCAAGCATCTGCATGCCAGCGCCGAGGCCCGGtcggctgctgc
ggccgTGAGGGCGGTGTCCCTAcgggcaggagaagagggaggcgtaGAGG
ACGTTTCTTCAAAAGAAGCCTACAGAGAAGCGGGGACAAGAGACGGgccc
ggggcgggaggctcAGGGCGGCCAGTGCCGGCAAAGGAAGTGCCCGGGGc
ctcttcgccgccctccccttcctctccctctccctcgttgcCGACCTCCG
CAGATTCCTTTAGCGATGGCGACGAGAGCAACAGTCATGGGCCCAGGAGC
gaggcgccgggggagggcgtgggccgCGCATCCGCCTCGGTCAAGCTCCT
GATCGCCAAGGCGGCGGGTGGGCTCGTGATTGGCCGTGCCGGGAGCACCA
TCAAAGCGCTCAACGAGGAGACCGGGACTCGCATCCAGCTTGCGGCAAAG
GACGAGGCCAGCGGGATGGTCACAGGCGAGAGGGTCGTGACCATTGCGGG
GCCCCTCCCAGGCGTTCTGCGAGGGGTGGCCCGCCTCTTGGAGAAACTGA
ACGAGGAGCCCGAGCTCGCGCGCTACCAGAACATGACCACCTCCTACTCC
CGCACTGGGGCAGCCGTCCACTCCATGCATCCCGCcttcgacctccccac
ctacCAGACCCAGTCGTTCGCAGACACCCAGatgctcttctccccccaAG
GCCCGGCCAGCACCCGTGGGCACGCCCTCAACTTGAGCCTGAGTGGGAGC
GAGGGCCAGCGAGGCCACCTGTCTCGGTCCCAGGGGCTGGGGCATAGTCA
AGCCAGGCAGAGCCAGCTCCACTCGCACGGCCCCGCCCCAATCCCGCTGT
CAGCGCCCCTGTCtgcttcccaccccctctcctACATGCACCCCCCCCCG
GATCGCGGGCCGCCCCACCCCCcgctgccccccttccccccccagcaCCC
TAGCGCCCTCCACAGCGCCAGGCaggctcctcctcggcaccaCGGCAGCG
GTCCGCCGTCTGGGCactcctctccgtccctcatGCCGCAGCATCTCCTT
TACACGGGgcatgcccctccttcctaccagCACatggcccctgccttcct
agCGATGCAGGCAGCACAGGACGCCGCCACAGCCGTGCTGACCCTCCAAG
TTCCCGACAAGCTGATCGGCTCCATCCTCGGCCGGTCGGGCGTCACGCTC
AAAAAGATCCAGTCCGACTCTGGGGCGCGCATCAGCATCAGCAAACGGGG
CGAGTTCGCGCCCGGGACACAGAACAGGGTTGTGACGATCGACGGACCGG
TCCAGTGCACGGAAGTGgcgagggggatggtggcAATGGCGGTGCAACAG
GCCAGCATGGGCCCCCTGCAAGGGAGCTACTGAATGGCGGAACCAACTAG
CGCAGAGACTAGCATGAATCACGCTCCTCCAGTCTTTCGTGCAGAAGGAG
GCGATACGCCCACAGAGACAAGTCGCAACGGCAAAGGAGCACCAGGAGAC
AACCCGGAGGCCGACAGCGAATTTGACACCCACAGAGGGGGTTCCAACGC
GAGCCTCGCCTTCGGAAGTGAACTACACCAAGGTGAAAACGATGAAGAGG
CCGTcaagtctccctcctccgcggcggTCGCTGCCCCCACTGCCTCAGGC
AAGAGTCGTCCACCCGCATTGAGCGACAATCTTCtacattcctccctcgc
caacaTTAGCATACATTCCTCCCCGGCTCATGACCACGGGATGCTGCCCG
GCGCCAGCGGccacagggggggggcaacggACGTGCCGAGCGCCGTGAAG
CTGCTGGTGTCGGCGGGACTGGCAGGCTGCCTGCttggcaaggggggggg
caccaTCAACGTGCTCCAGGAGGAGACCGGGGCCCGAATCAAGCTCTCCC
AGAACCAAGACTACTTTCCCGGGACACAGGACCGCGTGGTTCTCATatcg
ggggaggcggagacgtgCGTCACCGCCACTCTCCGAGTCATCAAGCATCT
GCATGCCAGCGCCGAGGCCCGGtcggctgctgcggccgTGAGGGCGGTGT
CCCTAcgggcaggagaagagggaggcgtaGAGGACGTTTCTTCAAAAGAA
GCCTACAGAGAAGCGGGGACAAGAGACGGgcccggggcgggaggctcAGG
GCGGCCAGTGCCGGCAAAGGAAGTGCCCGGGGcctcttcgccgccctccc
cttcctctccctctccctcgttgcCGACCTCCGCAGATTCCTTTAGCGAT
GGCGACGAGAGCAACAGTCATGGGCCCAGGAGCgaggcgccgggggaggg
cgtgggccgCGCATCCGCCTCGGTCAAGCTCCTGATCGCCAAGGCGGCGG
GTGGGCTCGTGATTGGCCGTGCCGGGAGCACCATCAAAGCGCTCAACGAG
GAGACCGGGACTCGCATCCAGCTTGCGGCAAAGGACGAGGCCAGCGGGAT
GGTCACAGGCGAGAGGGTCGTGACCATTGCGGGGCCCCTCCCAGGCGTTC
TGCGAGGGGTGGCCCGCCTCTTGGAGAAACTGAACGAGGAGCCCGAGCTC
GCGCGCTACCAGAACATGACCACCTCCTACTCCCGCACTGGGGCAGCCGT
CCACTCCATGCATCCCGCcttcgacctccccacctacCAGACCCAGTCGT
TCGCAGACACCCAGatgctcttctccccccaAGGCCCGGCCAGCACCCGT
GGGCACGCCCTCAACTTGAGCCTGAGTGGGAGCGAGGGCCAGCGAGGCCA
CCTGTCTCGGTCCCAGGGGCTGGGGCATAGTCAAGCCAGGCAGAGCCAGC
TCCACTCGCACGGCCCCGCCCCAATCCCGCTGTCAGCGCCCCTGTCtgct
tcccaccccctctcctACATGCACCCCCCCCCGGATCGCGGGCCGCCCCA
CCCCCcgctgccccccttccccccccagcaCCCTAGCGCCCTCCACAGCG
CCAGGCaggctcctcctcggcaccaCGGCAGCGGTCCGCCGTCTGGGCac
tcctctccgtccctcatGCCGCAGCATCTCCTTTACACGGGgcatgcccc
tccttcctaccagCACatggcccctgccttcctagCGATGCAGGCAGCAC
AGGACGCCGCCACAGCCGTGCTGACCCTCCAAGTTCCCGACAAGCTGATC
GGCTCCATCCTCGGCCGGTCGGGCGTCACGCTCAAAAAGATCCAGTCCGA
CTCTGGGGCGCGCATCAGCATCAGCAAACGGGGCGAGTTCGCGCCCGGGA
CACAGAACAGGGTTGTGACGATCGACGGACCGGTCCAGTGCACGGAAGTG
gcgagggggatggtggcAATGGCGGTGCAACAGGCCAGCATGGGCCCCCT
GCAAGGGAGCTACTGA

Synonyms

Publications