EWM23909.1, cds6772 (CDS) Nannochloropsis gaditana

Overview
NameEWM23909.1
Unique Namecds6772
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:503209..503257 +
Alignment locationCM002469.1:503409..505342 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23909.1
Productneuro-oncological ventral antigen 2
Orig transcript idgnl|cribi|Naga_100113g17.9975.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:503209..503257 +
CM002469.1supercontigCM002469.1:503409..505342 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|585105191|gb|EWM23909.1| (neuro-oncological ventral antigen 2 [Nannochloropsis gaditana])

HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 0
Query:    1 MAEPTSAETSMNHAPPVFRAEGGDTPTETSRNGKGAPGDNPEADSEFDTHRGGSNASLAFGSELHQGENDEEAVKSPSSAAVAAPTASGKSRPPALSDNLLHSSLANISIHSSPAHDHGMLPGASGHRGGATDVPSAVKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAETCVTATLRVIKHLHASAEARSAAAAVRAVSLRAGEEGGVEDVSSKEAYREAGTRDGPGAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHGPRSEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQLHSHGPAPIPLSAPLSASHPLSYMHPPPDRGPPHPPLPPFPPQHPSALHSARQAPPRHHGSGPPSGHSSPSLMPQHLLYTGHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAVQQASMGPLQGSY 660
            MAEPTSAETSMNHAPPVFRAEGGDTPTETSRNGKGAPGDNPEADSEFDTHRGGSNASLAFGSELHQGENDEEAVKSPSSAAVAAPTASGKSRPPALSDNLLHSSLANISIHSSPAHDHGMLPGASGHRGGATDVPSAVKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAETCVTATLRVIKHLHASAEARSAAAAVRAVSLRAGEEGGVEDVSSKEAYREAGTRDGPGAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHGPRSEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQLHSHGPAPIPLSAPLSASHPLSYMHPPPDRGPPHPPLPPFPPQHPSALHSARQAPPRHHGSGPPSGHSSPSLMPQHLLYTGHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAVQQASMGPLQGSY
Sbjct:    1 MAEPTSAETSMNHAPPVFRAEGGDTPTETSRNGKGAPGDNPEADSEFDTHRGGSNASLAFGSELHQGENDEEAVKSPSSAAVAAPTASGKSRPPALSDNLLHSSLANISIHSSPAHDHGMLPGASGHRGGATDVPSAVKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAETCVTATLRVIKHLHASAEARSAAAAVRAVSLRAGEEGGVEDVSSKEAYREAGTRDGPGAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHGPRSEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQLHSHGPAPIPLSAPLSASHPLSYMHPPPDRGPPHPPLPPFPPQHPSALHSARQAPPRHHGSGPPSGHSSPSLMPQHLLYTGHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAVQQASMGPLQGSY 660          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|553178840|ref|XP_005852612.1| (rna-binding protein nova-2, partial [Nannochloropsis gaditana CCMP526] >gi|553194859|ref|XP_005856042.1| rna-binding protein nova-2, partial [Nannochloropsis gaditana CCMP526] >gi|422293017|gb|EKU20318.1| rna-binding protein nova-2, partial [Nannochloropsis gaditana CCMP526] >gi|422295921|gb|EKU23220.1| rna-binding protein nova-2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 473.396 bits (1217), Expect = 8.298e-162
Identity = 243/247 (98.38%), Postives = 243/247 (98.38%), Query Frame = 0
Query:  226 AGEEGGVEDVSSKEAYREAGTRDGPGAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHGPRSEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQ 472
            AGEEGGVEDVSSKEAYREAGTRDG GAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHG  SEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAG LPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQ
Sbjct:    1 AGEEGGVEDVSSKEAYREAGTRDGLGAGGSGRPVPAKEVPGASSPPSPSSPSPSLPTSADSFSDGDESNSHG--SEAPGEGVGRASASVKLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGALPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHPAFDLPTYQTQSFADTQMLFSPQGPASTRGHALNLSLSGSEGQRGHLSRSQGLGHSQARQSQ 245          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1169033805|ref|XP_020469147.1| (RNA-binding protein Nova-1 isoform X2 [Monopterus albus])

HSP 1 Score: 107.457 bits (267), Expect = 4.099e-21
Identity = 103/349 (29.51%), Postives = 166/349 (47.56%), Query Frame = 0
Query:  315 KLLIAKAAGGLVIGRAGSTIKALNEETGTRIQLAAKDEASGMVTGERVVTIAGPLPGVLRGVARLLEKLNEEPELARYQNMTTSYSRTGAAVHSMHP--------AFDLPTYQTQSFADTQMLFS----PQGPASTRGHALNLSLS---GSEGQRGHLSRSQGLGHSQARQSQLHSHGPAPIPLSAPLSASHPLSYMHPPPDRGPPHPPLPPFPPQHPSALHSARQAPPRHHGSGPPSGHSSPSLMPQHLLYTGHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            KL++  +  GL+IG+ G+T+KA+ E++G  +QL+ K E  G+   ERVVTI+G      + V  +++K+ E+P+ +   N+  SYS     V + +P        A  LP     +   +++L      P   +S  G+ L L+++    +    G+ + + GLG + A  S +           A ++AS           R P +         HP+             G G   G S  SL        G+   S   MA + LA +   D A  V+ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  107 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPE--GINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNI--SYSNVSGPVANSNPTGSPYANTAEVLPNAAAAAATASRLLTGMGAFPTAMSSFSGNDL-LAITSALNTLASYGYNTNTLGLGLNPAAASGVL----------AAVAASAKPGGAGGGKPRVPSYASDASSSAGHPAT------------GLG---GFSLGSLAAATGASNGYLNASSPLMASSLLATEKLADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 425          

HSP 2 Score: 65.4698 bits (158), Expect = 1.351e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:    8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 63          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1169033803|ref|XP_020469146.1| (RNA-binding protein Nova-1 isoform X1 [Monopterus albus])

HSP 1 Score: 79.337 bits (194), Expect = 6.711e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 0
Query:  562 MAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            MA + LA +   D A  V+ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  396 MASSLLATEKLADGAKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 482          

HSP 2 Score: 65.855 bits (159), Expect = 1.464e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:   65 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 120          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1174650402|ref|XP_020563699.1| (RNA-binding protein Nova-1-like [Oryzias latipes])

HSP 1 Score: 76.2554 bits (186), Expect = 6.348e-11
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0
Query:  562 MAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            +A + LA +   + A  V+ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  418 VASSLLATEKLAEGAKEVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSQAATQAAQYLISQRI 504          

HSP 2 Score: 65.4698 bits (158), Expect = 1.559e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:   82 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 137          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|113677906|ref|NP_001038254.1| (neuro-oncological ventral antigen 1 [Danio rerio] >gi|213624727|gb|AAI71499.1| Neuro-oncological ventral antigen 1 [Danio rerio] >gi|213627516|gb|AAI71495.1| Neuro-oncological ventral antigen 1 [Danio rerio])

HSP 1 Score: 75.8702 bits (185), Expect = 8.702e-11
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0
Query:  553 GHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            G+  PS   +A + L  +   +    V+ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  385 GYLNPSSPLVASSLLGTEKLAEGGKEVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 480          

HSP 2 Score: 65.4698 bits (158), Expect = 1.662e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:   59 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 114          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|528479837|ref|XP_005165375.1| (neuro-oncological ventral antigen 1 isoform X1 [Danio rerio])

HSP 1 Score: 75.485 bits (184), Expect = 1.023e-10
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0
Query:  553 GHAPPSYQHMAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            G+  PS   +A + L  +   +    V+ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  334 GYLNPSSPLVASSLLGTEKLAEGGKEVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 429          

HSP 2 Score: 65.0846 bits (157), Expect = 2.085e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:    8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 63          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1042345644|ref|XP_017315388.1| (PREDICTED: RNA-binding protein Nova-1-like isoform X1 [Ictalurus punctatus])

HSP 1 Score: 73.9442 bits (180), Expect = 3.692e-10
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0
Query:  562 MAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            +A + L  +   +    VL + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  405 VASSLLGTEKLAEGGKEVLEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 491          

HSP 2 Score: 65.4698 bits (158), Expect = 1.546e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:   70 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 125          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1042345646|ref|XP_017315389.1| (PREDICTED: RNA-binding protein Nova-1-like isoform X2 [Ictalurus punctatus])

HSP 1 Score: 73.559 bits (179), Expect = 3.792e-10
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0
Query:  562 MAPAFLAMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            +A + L  +   +    VL + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  +
Sbjct:  343 VASSLLGTEKLAEGGKEVLEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 429          

HSP 2 Score: 65.0846 bits (157), Expect = 1.704e-7
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  138 VKLLVSAGLAGCLLGKGGGTINVLQEETGARIKLSQNQDYFPGTQDRVVLISGEAE 193
            +K+L+ +  AG ++GKGG TI  LQ+ETGA IKLS+++D++PGT +RV LI G  E
Sbjct:    8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 63          
BLAST of EWM23909.1 vs. NCBI_GenBank
Match: gi|1099182085|ref|XP_018870197.1| (PREDICTED: RNA-binding protein Nova-2 [Gorilla gorilla gorilla])

HSP 1 Score: 71.633 bits (174), Expect = 1.038e-9
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0
Query:  566 FL-AMQAAQDAATAVLTLQVPDKLIGSILGRSGVTLKKIQSDSGARISISKRGEFAPGTQNRVVTIDGPVQCTEVARGMVAMAV 648
            FL A + A ++A  ++ + VP+ L+G+ILG+ G TL + Q  +GARI ISK+GEF PGT+NR VTI G    T+ A+ +++  V
Sbjct:  264 FLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 347          
The following BLAST results are available for this feature:
BLAST of EWM23909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105191|gb|EWM23909.1|0.000e+0100.00neuro-oncological ventral antigen 2 [Nannochlorops... [more]
gi|553178840|ref|XP_005852612.1|8.298e-16298.38rna-binding protein nova-2, partial [Nannochlorops... [more]
gi|1169033805|ref|XP_020469147.1|4.099e-2129.51RNA-binding protein Nova-1 isoform X2 [Monopterus ... [more]
gi|1169033803|ref|XP_020469146.1|6.711e-1244.83RNA-binding protein Nova-1 isoform X1 [Monopterus ... [more]
gi|1174650402|ref|XP_020563699.1|6.348e-1142.53RNA-binding protein Nova-1-like [Oryzias latipes][more]
gi|113677906|ref|NP_001038254.1|8.702e-1139.58neuro-oncological ventral antigen 1 [Danio rerio] ... [more]
gi|528479837|ref|XP_005165375.1|1.023e-1039.58neuro-oncological ventral antigen 1 isoform X1 [Da... [more]
gi|1042345644|ref|XP_017315388.1|3.692e-1041.38PREDICTED: RNA-binding protein Nova-1-like isoform... [more]
gi|1042345646|ref|XP_017315389.1|3.792e-1041.38PREDICTED: RNA-binding protein Nova-1-like isoform... [more]
gi|1099182085|ref|XP_018870197.1|1.038e-945.24PREDICTED: RNA-binding protein Nova-2 [Gorilla gor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6788rna6788Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications