rna4835, rna4835 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4835
Unique Name	rna4835
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2596
Alignment location	CM002464.1:469540..471896 -

Link to JBrowse

Properties


Property Name	Value
Product	Mitochodrial transcription termination factor
Orig transcript id	gnl\|cribi\|Naga_100021g5.8742.mrna
Orig protein id	gnl\|cribi\|Naga_100021g5.8742
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:469540..471896 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g5	gene4669	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25799.1	cds4823	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4835	rna4835-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:469540..471896-
coding sequence from alignment at CM002464.1:469540..471896-

mRNA sequence

>rna4835 ID=rna4835|Name=rna4835|organism=Nannochloropsis gaditana|type=mRNA|length=2596bp
ATGGCTGATGGCCAAGAGCCTTTCTTCCAGCTTCCGCCATCTCCTGTAAT
CGATGAAGCATCCGATGGCGTGGCGTCTCCGCCAGAGCCAGAGGAAAGTA
GCACGGACCCCTTCACTGAGGCCATTGTGCGGTTCCACATGACCCTTGCC
GAGGTGCAGCAGCAGCATAACCGGCCATTATCAGAGCTTCAGACAGAAAA
ATACAGAAAAAATAAAGAAAACGACAACATCGACGAAAAGCTGCTAGCTG
GGCGGGATGTAGCAGCGCCAGCACTGGGCCGCCTCATGGAAGATCTTGAC
GGTATACGCGCTGAGATGTATGTGGGTGACACTGCCGCTGAAACGTCTCC
GGAACAAAAAGATGTTCAGCAGGAAATGCTGGAGGACTGTGAACGCAAAA
CGGGCGATGTGGTGCTGAATTTACTACGCAAGGCCACATCGGCCATAGCT
CCAGACCCGGCTGCCGCTCCGGCGTGGTTTCTTGAGTGCGTGCGGCTCAA
ACAAGAGACCAAGGCGGCCAATATTTATGGAGGATTTCTGCAACGCCGGC
TTATCGAATCGACAGAGGATGCACTACAAGCTCTGGACAGTGTCCGGTCG
CTGCGCCGTCTTCAGATGGGCAGCAGCAACAGCCAGGCCGATGATAGTGA
GGGAGTAGGACAGGACAGTCAGCCTCACGTCACCGGACTGAGTCGACTGC
TGGGGGAGGCCTCCCGAATGATCGGGTCTTTGAGGGGAGAGGGGTATTAC
TGTGAAGATGAGAGCAGCCAGGATGCGGAGACAGGCACGGCGGGGAGCAG
GCACGCTGCCCGTTTCTCCTCGTGGCTTTCTGGACCTTGCCTGGCGAGAA
TGGTGACCTCTCTGAATAATATAGCACAACAGCAAGCGCTCAAGCTCCTG
AAATGGTACAGTGAGGACTGCAGTGTGCGAGAATGGCAGGAGAGGTGCCT
GTCTGCGCGGGGCACGGAGGACTTGGTGGTGCAGGAGTTGGACTTCGCCT
TGGACGAGCTGCAGCTGGTCCTGGGGCTCTCAAACCGTTACTTGGCTTTC
GTCGCCGCCCCTCGAGAGGAATGCATGGATCTCTTCATCCAAGTTCAGGA
GCTCGCGGGGTGCTACGTATCGATGGAAAGCGCCTATTGCACCTTCAACG
TGGCCAAGGCGATAGCCTGGGGGCAGCCCACCGAGGTCCAGGAGGGCGTG
CTCGTGTCTACGCTCGTCGAGGACGTGCCCATGATCCTGAACCGCTCCAT
CGAGCGTGCCACCCAAACGCTGAGCGACCAAGCGATCTTGGCTGTCGCCA
GTCGGGCCACGGAGCTCTTGAGCCCCGACTCGGTCCCCTCCTTCGCGGCA
GCACTACAGGCCCTTGTGGAAGATAGGAGCCTGACGGGGGTGGAGGCCGG
TGGAGGAGCCATGGATCAATTCAGCCGCGCTCTACAGCAGCAGTTAGACG
AGGAAGAAGGGAACGTGACGCACGAAGCCATGATTTACGCCATAAATAGC
ATGGATTGCGCGGTCGCAGCTATGAAAAAGATGCAGGATATGCTGCTAGA
GCTCGGCGTCCGAGGCTCCTGTGAAGGAGAGAGTCAACAAAGGGCAAGGG
GCGGACCGCACATGGTGGAGGCCGTGGCGCAGGAGTTCGGTCGCGTCTTA
AAGCAATATGGCGGGTATCTGGAGGTATTGCTCGACGATTTTGCGTCCCG
CTACGTATCGTCGGGTGCGTCCTCTGGGTTTTCTGACCATGTGTGGTCGG
ACATTGTATACCGTCATTCTGTCAAGGCCTGGTGTCATTCCTCTCCCCGG
TCTTGCCTATTCTGGTGGGCCGCTTCATTTGTGGTCTCGGGCGTCGTTCT
GTAATCGAATTCTGTTTCGAAGGTGTTGCAATGCCTCTCCTCTCCCGGCT
CTGATGACTTCCCCTTCCTTCCGACAGGCATCTTAGACTATCTCTCTCAA
GTCGTAGGCCGTACCAACTACACCATCGATGCCACTACATACGAAAAAGA
GGCTGCGGGCCGGGGGGATCCATTCGTGACGCAGTTTCTGGACTACATGT
TTGTCAAGGACAAAGTGCTGAGGGACTGCAAGGCCGGCATGACGGGGTCG
GCACTGCTCGGGTTTGTGGAGCGCGTGGCCATGAGCTTGTCTCCCGCCTT
GATTCAAGCGCTGGAGGAAAAAGAGTTCACCGAATGGGGAGGCATGAAGC
TTCGGCAGCAGGTTCGACTATTGCAAGAGCAGTTGATGGAGCTTGTTGAC
GGTCATGGGACACTCCTCCCGCAGTTCGCTCGGGTGGACCAGATGGTGAC
ATTGTTGAACCTGGACAGCCCTGCTGATGTCCATTACCTCATGATGTTAA
AGCCTGACATAGTACAGCAGCCTGCGTGCGGGCTTGGGGAACACAACAGC
AAAGAAGACAAGCCAAAATCTGCAGAGGTGGTCGGTCGATTGACGCCTGC
AGAGGTAAAGCAGATTTTGAAGCAACGTGTAGAATTTGATCCGCGGGCAG
TGGAGTCTCTAATTTTTAAATAACTCCACACAAGGATACCGCTGTAAATT
GTATGAGGTGTATCAACAGTAAATTAAGCACATCTTTCTGTTATTT

protein sequence of rna4835

>rna4835-protein ID=rna4835-protein|Name=rna4835|organism=Nannochloropsis gaditana|type=polypeptide|length=632bp
MKSDKQAIGCYETNESPAGCEVLQLLRLSRFLLNEQAEGKGSKCKTCSCR
CVASNRARSRSHLQKELEKVLQCLSFEVIMYLILLLFVMAVPGAHAFSGP
TPSRSSTLGSHHHPRSVALESTIAGWMSVAGYDQGYGDNRENDRDERASL
YALVMDELAHRRGLSVSGVRQVIRKTKPQDLAARWRGWRRSCDCLLSLGF
SAQNVTSILQGSSAFLHELDPEADIRRVVFYLWEDLGFNSWGKIGLGLGS
WQRHKYKVVTTAPEVLRRKPEGGVEETVATLEQVGMPTKYILDASFRFPS
LLNVPPSLIFCVSAYLSSTDVGFRPRDLGALYRRNPWLLHPRTVEQLRPV
VAFLREELQVQRMHVVLRGYPQVVLKSVNADLQPRVVLLQSLGIPSQQIG
CMVEAFPLLLSLPLEEQMLPVLFFFQAELGFSRHELWTMLRSFPAVLDLS
IEENIRPVVSFLRDDVGLPDVKEFIKRLPPVLGYPVDWELRKKWALFQEL
GLDASDFAGFPGFVSYSLHDRLIPRLDFCRRQGVLAQDVVALRVVMAGGD
AAFAKEFIGVDPEAYEEFLLDYKVRRKEARAAQTRADRESARSTRSWSER
KKGEKKWGRMKDEVSSMEEDDDSFLFSEAVCD

mRNA from alignment at CM002464.1:469540..471896-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4835 ID=rna4835|Name=rna4835|organism=Nannochloropsis gaditana|type=mRNA|length=2357bp|location=Sequence derived from alignment at CM002464.1:469540..471896- (Nannochloropsis gaditana)
AAAATGCCGTGTGCATGAGCATGTCCAACCCTGACGGTCAATGTTACTGA
CAACTTTGTCATACCACAGTTGAGCTGGCCTGCAAAAATACGTGAGAGCA
GGGGAAAGGGGCCACGCCTCCCCCCTCCAGGCCTCCTGTCAGTGCTGAGG
GCTTCGACACAAGCCTCTGAGTCGTCTCGTCATCAGCCTCCAGCAGAAAA
CGTATACATTTTTCGCCTCGAAGGCGGAAAAAGGTCATGAAGTCGGACAA
ACAAGCCATAGGATGCTACGAAACTAATGAAAGTCCGGCCGGCTGCGAGG
TTTTACAGCTACTACGGCTTTCACGGTTTCTTCTAAATGAGCAAGCAGAG
GGCAAGGGTAGCAAATGCAAGACCTGCTCTTGCAGATGCGTGGCGAGCAA
CCGTGCACGCAGCCGCTCACATCTGCAAAAGGAGCTTGAAAAGGTCTTGC
AGTGTTTGTCTTTTGAAGTGATCATGTATTTGATCCTCCTCCTCTTTGTG
ATGGCCGTGCCAGGAGCGCATGCTTTTTCTGGGCCAACCCCGTCTAGATC
TTCAACGTTGGGATCCCATCACCACCCGCGAAGCGTAGCATTGGAATCTA
CCATTGCAGGGTGGATGTCAGTGGCGGGCTATGATCAGGGCTACGGTGAT
AATCGTGAAAATGACAGGGACGAAAGAGCCAGCTTATATGCGCTCGTCAT
GGACGAACTAGCGCATCGACGGGGCTTGAGTGTCTCGGGCGTTAGACAGG
TGATTCGAAAAACAAAGCCGCAGGACCTGGCAGCACGTTGGAGAGGATGG
CGGCGCAGCTGTGACTGTTTATTATCCCTGGGATTCTCCGCGCAGAATGT
GACGAGCATTCTGCAAGGCAGCAGTGCCTTCCTCCACGAACTGGACCCCG
AGGCGGATATTCGGCGCGTGGTCTTTTACCTGTGGGAGGACCTCGGCTTC
AATAGCTGGGGAAAGATCGGCCTGGGACTGGGGTCATGGCAGCGGCACAA
GTACAAGGTTGTGACCACGGCGCCCGAGGTGCTCCGTCGAAAGCCGGAAG
GGGGGGTGGAGGAGACGGTGGCGACTCTGGAGCAGGTGGGGATGCCGACC
AAGTACATCCTCGACGCCTCTTTCCGCTTCCCCTCCCTCCTGAACGTGCC
TCCCTCCCTCATCTTTTGCGTTTCCGCATACTTGTCCTCCACGGACGTGG
GCTTCCGACCCCGCGACCTGGGCGCCCTCTACCGGCGCAATCCCTGGCTC
CTGCACCCTCGCACTGTCGAGCAGCTCCGGCCTGTTGTGGCCTTCCTCAG
GGAGGAGCTGCAGGTCCAGCGCATGCACGTGGTCCTCCGCGGCTACCCCC
AGGTCGTCCTCAAGAGCGTGAACGCAGATTTGCAGCCGCGCGTGGTCCTG
CTGCAGTCGCTGGGCATTCCATCGCAGCAGATCGGCTGCATGGTAGAGGC
CTTCCCCCTCCTTCTCTCCCTGCCCCTGGAGGAGCAGATGCTGCCCGTGC
TTTTCTTCTTCCAAGCGGAACTCGGCTTTTCGCGGCATGAACTATGGACA
ATGCTGCGTTCCTTTCCCGCCGTGTTGGACTTGTCCATTGAGGAAAACAT
ACGCCCTGTCGTGTCTTTTCTCCGCGATGATGTGGGACTCCCAGATGTGA
AAGAGTTCATCAAACGTCTCCCCCCCGTCCTTGGCTACCCCGTGGACTGG
GAATTGCGGAAGAAGTGGGCGCTTTTCCAGGAGCTGGGCCTCGATGCATC
GGACTTTGCGGGCTTCCCGGGCTTCGTCTCTTACTCCTTGCACGATCGTC
TGATTCCCCGCCTGGACTTCTGTCGACGACAGGGCGTCCTCGCCCAAGAC
GTTGTTGCGCTTCGGGTAGTGATGGCGGGTGGGGACGCGGCATTTGCAAA
GGAGTTTATCGGGGTGGATCCAGAAGCGTACGAGGAGTTTTTGTTGGACT
ACAAAGTGCGGAGGAAGGAAGCACGAGCTGCGCAAACACGAGCTGATCGG
GAAAGCGCTAGGTCGACCCGGTCGTGGAGTGAAAGAAAGAAAGGAGAAAA
AAAATGGGGAAGGATGAAAGACGAGGTTAGCAGCATGGAAGAGGACGATG
ACAGCTTTCTTTTTTCGGAAGCTGTTTGCGACTAAGCAGGTAATAGAGCA
CTAGAAAAATTTGTATCTAACAATCACGCGGCGGTAATGGGCTTGTACCA
GTAAAGGCATGACTAAAAAAGATGTGCGACGTATTTTCTATCGAGGCGCT
ATTTTTTTTTTCCAAATAAAGTCTGCTTTTATAGTGGCGAGAGTAGTCGC
TGTTCAAAATATTCATTCATCAGTGATTGTCGACCAACCAAAAGGAAACT
CCTGGGC

Coding sequence (CDS) from alignment at CM002464.1:469540..471896-

>rna4835 ID=rna4835|Name=rna4835|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at CM002464.1:469540..471896- (Nannochloropsis gaditana)
ATGAAGTCGGACAAACAAGCCATAGGATGCTACGAAACTAATGAAAGTCC
GGCCGGCTGCGAGGTTTTACAGCTACTACGGCTTTCACGGTTTCTTCTAA
ATGAGCAAGCAGAGGGCAAGGGTAGCAAATGCAAGACCTGCTCTTGCAGA
TGCGTGGCGAGCAACCGTGCACGCAGCCGCTCACATCTGCAAAAGGAGCT
TGAAAAGGTCTTGCAGTGTTTGTCTTTTGAAGTGATCATGTATTTGATCC
TCCTCCTCTTTGTGATGGCCGTGCCAGGAGCGCATGCTTTTTCTGGGCCA
ACCCCGTCTAGATCTTCAACGTTGGGATCCCATCACCACCCGCGAAGCGT
AGCATTGGAATCTACCATTGCAGGGTGGATGTCAGTGGCGGGCTATGATC
AGGGCTACGGTGATAATCGTGAAAATGACAGGGACGAAAGAGCCAGCTTA
TATGCGCTCGTCATGGACGAACTAGCGCATCGACGGGGCTTGAGTGTCTC
GGGCGTTAGACAGGTGATTCGAAAAACAAAGCCGCAGGACCTGGCAGCAC
GTTGGAGAGGATGGCGGCGCAGCTGTGACTGTTTATTATCCCTGGGATTC
TCCGCGCAGAATGTGACGAGCATTCTGCAAGGCAGCAGTGCCTTCCTCCA
CGAACTGGACCCCGAGGCGGATATTCGGCGCGTGGTCTTTTACCTGTGGG
AGGACCTCGGCTTCAATAGCTGGGGAAAGATCGGCCTGGGACTGGGGTCA
TGGCAGCGGCACAAGTACAAGGTTGTGACCACGGCGCCCGAGGTGCTCCG
TCGAAAGCCGGAAGGGGGGGTGGAGGAGACGGTGGCGACTCTGGAGCAGG
TGGGGATGCCGACCAAGTACATCCTCGACGCCTCTTTCCGCTTCCCCTCC
CTCCTGAACGTGCCTCCCTCCCTCATCTTTTGCGTTTCCGCATACTTGTC
CTCCACGGACGTGGGCTTCCGACCCCGCGACCTGGGCGCCCTCTACCGGC
GCAATCCCTGGCTCCTGCACCCTCGCACTGTCGAGCAGCTCCGGCCTGTT
GTGGCCTTCCTCAGGGAGGAGCTGCAGGTCCAGCGCATGCACGTGGTCCT
CCGCGGCTACCCCCAGGTCGTCCTCAAGAGCGTGAACGCAGATTTGCAGC
CGCGCGTGGTCCTGCTGCAGTCGCTGGGCATTCCATCGCAGCAGATCGGC
TGCATGGTAGAGGCCTTCCCCCTCCTTCTCTCCCTGCCCCTGGAGGAGCA
GATGCTGCCCGTGCTTTTCTTCTTCCAAGCGGAACTCGGCTTTTCGCGGC
ATGAACTATGGACAATGCTGCGTTCCTTTCCCGCCGTGTTGGACTTGTCC
ATTGAGGAAAACATACGCCCTGTCGTGTCTTTTCTCCGCGATGATGTGGG
ACTCCCAGATGTGAAAGAGTTCATCAAACGTCTCCCCCCCGTCCTTGGCT
ACCCCGTGGACTGGGAATTGCGGAAGAAGTGGGCGCTTTTCCAGGAGCTG
GGCCTCGATGCATCGGACTTTGCGGGCTTCCCGGGCTTCGTCTCTTACTC
CTTGCACGATCGTCTGATTCCCCGCCTGGACTTCTGTCGACGACAGGGCG
TCCTCGCCCAAGACGTTGTTGCGCTTCGGGTAGTGATGGCGGGTGGGGAC
GCGGCATTTGCAAAGGAGTTTATCGGGGTGGATCCAGAAGCGTACGAGGA
GTTTTTGTTGGACTACAAAGTGCGGAGGAAGGAAGCACGAGCTGCGCAAA
CACGAGCTGATCGGGAAAGCGCTAGGTCGACCCGGTCGTGGAGTGAAAGA
AAGAAAGGAGAAAAAAAATGGGGAAGGATGAAAGACGAGGTTAGCAGCAT
GGAAGAGGACGATGACAGCTTTCTTTTTTCGGAAGCTGTTTGCGACTAA

Synonyms

Publications