NO23G01810.1, NO23G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01810.1
Unique NameNO23G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr23:651667..653262 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:651667..653262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01810.1 vs.
Match: EWM27772.1 (diaminopimelate decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 581.6 bits (1498), Expect = 2.400e-162
Identity = 316/537 (58.85%), Postives = 379/537 (70.58%), Query Frame = 0 
Query:    4 AAYDSRQVQIVLQSLRAQGILQPSKARAGEDVVIAYDLDALHTGFDSLVKAFPLHFLHCYAIKAAPMGFILQAAIRAGLGLEAASILEVESALFHGCPPEKIVFDSPAKTYKELDFALSKGIHINANTLEELDRIASILSATSSSTFPP---PSIGLRINPLVGAGTIQELSVATATSKFGVPLTLDTSSFSSSSFPCSSSYFSLSNKHKVISYFHKYPWLTGLHIHVGSQGLGMDQLAQGVKVLIALTEEVEESLSKN--GAEMEGRRRITTLDIGGGLAANYLSNQAMPTHAQLVEVLREAAPSLFVPPPLSSSNRNGSNGSSGSSSSGPCVRVVTEYGRSLTAKTAWLASRVEYAFDNQEEDGREGQREEEGGRGTTGLRTAILHAGADVLLRECYVPGKFYHRFTVHDKDGHLAEV------KEGGKEEGQVHA---RTPRLHNLAGPLCFAGDVIVSGIKLPKVESGDWLVVHDVGGYTLALFSRYCSRAAPAVVGYRIGREGGNEAGMGVTVEVLQGREAGESVLEFWGPR 527
            AAY S +V  VL++L+ QG+LQPS+AR GEDV++AYDLDAL  GF SL +AFP HFLHCYA+KAAPMGFI++ AI+AGLG+EAASILEVE+AL HGC P  IVFDSPAKT++ELD+ALS GIHINANT EE+DRIASILS  + S  PP   PS+GLRINPLVG GTI  LSVATATSKFGVPL    SS S        +  S S+K +++  F KYPWLTGLH+HVGSQG+ M QLA GV+VL  L  +V++++     G   E   R+ T+D+GGGL  +Y S +  P   +L   L+ AAPSLF+PPP     +      SG S+  P +RVVTE+GR LT +TAWLASRVEY F N   DG        G  G   LRTAILHAGAD+LLRECY+PG+F HRF+++ + G    V      +E G+EEG V A   R P   NLAGPLCFAGDVI  G++LP + SGDW+VVHDVGGYTLALFSRYCSR+APAVVGY  G E G E G  + V VLQ RE  +SVL FWG R
Sbjct:    3 AAYKSSKVGAVLRTLQKQGVLQPSEARKGEDVILAYDLDALEAGFRSLTEAFPAHFLHCYAMKAAPMGFIVEKAIQAGLGIEAASILEVENALLHGCQPANIVFDSPAKTFRELDYALSLGIHINANTFEEIDRIASILSEPTPSHAPPRYPPSVGLRINPLVGEGTIAALSVATATSKFGVPL----SSCSYDPSTPIENIPSSSSKDRILGAFRKYPWLTGLHVHVGSQGISMGQLAHGVRVLSLLAIDVDKAMGMEDGGGPGESGGRVRTMDLGGGLGVDYASPRNSPNFTELAATLKRAAPSLFLPPPAQEGGKGSVEPQSGCSAGHPRIRVVTEFGRGLTVRTAWLASRVEYVFANA--DG--------GLEGAETLRTAILHAGADILLRECYLPGRFPHRFSLYSEAGQGVAVEGEEEGEEEGEEEGMVEARLTRRPGRFNLAGPLCFAGDVIAKGVRLPLLTSGDWVVVHDVGGYTLALFSRYCSRSAPAVVGYWKGGEEGGERGEEIQVRVLQARETEKSVLGFWGGR 525
The following BLAST results are available for this feature:
BLAST of NO23G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27772.12.400e-16258.85diaminopimelate decarboxylase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01810NO23G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01810.1NO23G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01810.1.cds1NO23G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01810.1 ID=NO23G01810.1|Name=NO23G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGCCGCCCGCCGCCTACGACTCCCGCCAGGTGCAAATAGTCCTCCAATC
ATTGCGTGCCCAAGGTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGAAG
ACGTGGTGATTGCCTATGACTTGGATGCCTTGCATACGGGGTTCGACAGC
CTCGTCAAAGCCTTCCCCCTTCATTTCCTCCACTGCTATGCCATCAAAGC
CGCACCCATGGGCTTCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGGAC
TCGAAGCTGCTTCAATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCTGT
CCCCCGGAAAAGATTGTCTTTGACTCCCCCGCCAAGACCTACAAAGAGCT
GGACTTCGCCTTGTCCAAAGGTATTCACATCAACGCCAACACTCTCGAGG
AACTTGATCGCATTGCCTCCATCCTCTCAGCAACATCCTCCTCCACTTTT
CCCCCTCCCTCCATCGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGTAC
AATCCAAGAACTCAGCGTCGCCACTGCCACATCCAAATTCGGTGTCCCCC
TCACCCTCGACACCTCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCTCC
TCTTATTTTTCCTTGAGCAATAAACATAAAGTCATCTCCTACTTCCATAA
GTACCCCTGGCTGACTGGCCTCCACATACACGTCGGGTCGCAAGGACTCG
GGATGGATCAACTAGCACAAGGCGTTAAGGTCCTCATCGCCCTCACAGAA
GAAGTAGAGGAATCGCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGGAG
AAGGATCACCACGTTGGATATCGGAGGGGGGTTGGCCGCGAATTATCTAT
CGAATCAAGCCATGCCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGGAG
GCGGCTCCTTCTCTTTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGAAA
CGGAAGCAATGGCAGCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAGGG
TAGTGACGGAGTATGGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTGCC
AGCCGGGTGGAGTACGCTTTTGACAACCAGGAGGAAGACGGGAGGGAGGG
ACAAAGGGAGGAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGCAA
TTCTGCATGCGGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGGGG
AAGTTCTACCATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCCGA
AGTAAAGGAAGGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCCTC
GCCTTCACAATCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTGTA
AGCGGCATAAAGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTGCA
TGATGTCGGAGGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAGAG
CCGCGCCAGCCGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATGAG
GCAGGGATGGGGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGA
GAGTGTGTTGGAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAG
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protein sequence of NO23G01810.1

>NO23G01810.1-protein ID=NO23G01810.1-protein|Name=NO23G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MPPAAYDSRQVQIVLQSLRAQGILQPSKARAGEDVVIAYDLDALHTGFDS
LVKAFPLHFLHCYAIKAAPMGFILQAAIRAGLGLEAASILEVESALFHGC
PPEKIVFDSPAKTYKELDFALSKGIHINANTLEELDRIASILSATSSSTF
PPPSIGLRINPLVGAGTIQELSVATATSKFGVPLTLDTSSFSSSSFPCSS
SYFSLSNKHKVISYFHKYPWLTGLHIHVGSQGLGMDQLAQGVKVLIALTE
EVEESLSKNGAEMEGRRRITTLDIGGGLAANYLSNQAMPTHAQLVEVLRE
AAPSLFVPPPLSSSNRNGSNGSSGSSSSGPCVRVVTEYGRSLTAKTAWLA
SRVEYAFDNQEEDGREGQREEEGGRGTTGLRTAILHAGADVLLRECYVPG
KFYHRFTVHDKDGHLAEVKEGGKEEGQVHARTPRLHNLAGPLCFAGDVIV
SGIKLPKVESGDWLVVHDVGGYTLALFSRYCSRAAPAVVGYRIGREGGNE
AGMGVTVEVLQGREAGESVLEFWGPRGERER*
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mRNA from alignment at chr23:651667..653262+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01810.1 ID=NO23G01810.1|Name=NO23G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at chr23:651667..653262+ (Nannochloropsis oceanica)
ATGCCGCCCGCCGCCTACGACTCCCGCCAGGTGCAAATAGTCCTCCAATC
ATTGCGTGCCCAAGGTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGAAG
ACGTGGTGATTGCCTATGACTTGGATGCCTTGCATACGGGGTTCGACAGC
CTCGTCAAAGCCTTCCCCCTTCATTTCCTCCACTGCTATGCCATCAAAGC
CGCACCCATGGGCTTCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGGAC
TCGAAGCTGCTTCAATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCTGT
CCCCCGGAAAAGATTGTCTTTGACTCCCCCGCCAAGACCTACAAAGAGCT
GGACTTCGCCTTGTCCAAAGGTATTCACATCAACGCCAACACTCTCGAGG
AACTTGATCGCATTGCCTCCATCCTCTCAGCAACATCCTCCTCCACTTTT
CCCCCTCCCTCCATCGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGTAC
AATCCAAGAACTCAGCGTCGCCACTGCCACATCCAAATTCGGTGTCCCCC
TCACCCTCGACACCTCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCTCC
TCTTATTTTTCCTTGAGCAATAAACATAAAGTCATCTCCTACTTCCATAA
GTACCCCTGGCTGACTGGCCTCCACATACACGTCGGGTCGCAAGGACTCG
GGATGGATCAACTAGCACAAGGCGTTAAGGTCCTCATCGCCCTCACAGAA
GAAGTAGAGGAATCGCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGGAG
AAGGATCACCACGTTGGATATCGGAGGGGGGTTGGCCGCGAATTATCTAT
CGAATCAAGCCATGCCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGGAG
GCGGCTCCTTCTCTTTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGAAA
CGGAAGCAATGGCAGCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAGGG
TAGTGACGGAGTATGGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTGCC
AGCCGGGTGGAGTACGCTTTTGACAACCAGGAGGAAGACGGGAGGGAGGG
ACAAAGGGAGGAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGCAA
TTCTGCATGCGGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGGGG
AAGTTCTACCATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCCGA
AGTAAAGGAAGGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCCTC
GCCTTCACAATCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTGTA
AGCGGCATAAAGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTGCA
TGATGTCGGAGGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAGAG
CCGCGCCAGCCGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATGAG
GCAGGGATGGGGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGA
GAGTGTGTTGGAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAG
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Coding sequence (CDS) from alignment at chr23:651667..653262+

>NO23G01810.1 ID=NO23G01810.1|Name=NO23G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr23:651667..653262+ (Nannochloropsis oceanica)
ATGCCGCCCGCCGCCTACGACTCCCGCCAGGTGCAAATAGTCCTCCAATC
ATTGCGTGCCCAAGGTATCCTGCAGCCCTCCAAGGCCCGCGCAGGGGAAG
ACGTGGTGATTGCCTATGACTTGGATGCCTTGCATACGGGGTTCGACAGC
CTCGTCAAAGCCTTCCCCCTTCATTTCCTCCACTGCTATGCCATCAAAGC
CGCACCCATGGGCTTCATCCTCCAAGCAGCCATTCGGGCAGGGCTAGGAC
TCGAAGCTGCTTCAATTCTAGAGGTCGAAAGCGCCCTCTTTCACGGCTGT
CCCCCGGAAAAGATTGTCTTTGACTCCCCCGCCAAGACCTACAAAGAGCT
GGACTTCGCCTTGTCCAAAGGTATTCACATCAACGCCAACACTCTCGAGG
AACTTGATCGCATTGCCTCCATCCTCTCAGCAACATCCTCCTCCACTTTT
CCCCCTCCCTCCATCGGCTTGCGTATCAACCCCCTCGTCGGCGCGGGTAC
AATCCAAGAACTCAGCGTCGCCACTGCCACATCCAAATTCGGTGTCCCCC
TCACCCTCGACACCTCCTCCTTCTCCTCTTCTTCTTTTCCTTGTTCCTCC
TCTTATTTTTCCTTGAGCAATAAACATAAAGTCATCTCCTACTTCCATAA
GTACCCCTGGCTGACTGGCCTCCACATACACGTCGGGTCGCAAGGACTCG
GGATGGATCAACTAGCACAAGGCGTTAAGGTCCTCATCGCCCTCACAGAA
GAAGTAGAGGAATCGCTTTCTAAGAATGGGGCAGAGATGGAGGGAAGGAG
AAGGATCACCACGTTGGATATCGGAGGGGGGTTGGCCGCGAATTATCTAT
CGAATCAAGCCATGCCTACTCATGCGCAGCTGGTGGAGGTTTTGAGGGAG
GCGGCTCCTTCTCTTTTCGTTCCGCCCCCACTTTCTTCCTCGAATAGAAA
CGGAAGCAATGGCAGCAGTGGCAGCAGTAGCAGTGGTCCTTGCGTGAGGG
TAGTGACGGAGTATGGTCGCTCCCTTACGGCGAAAACTGCCTGGCTTGCC
AGCCGGGTGGAGTACGCTTTTGACAACCAGGAGGAAGACGGGAGGGAGGG
ACAAAGGGAGGAAGAGGGAGGACGCGGGACGACAGGATTGCGAACGGCAA
TTCTGCATGCGGGTGCCGACGTGTTGTTGCGCGAGTGCTACGTGCCGGGG
AAGTTCTACCATCGATTTACAGTGCACGACAAAGATGGCCACCTGGCCGA
AGTAAAGGAAGGAGGGAAGGAGGAAGGGCAAGTGCACGCACGCACCCCTC
GCCTTCACAATCTGGCTGGGCCTCTGTGCTTTGCGGGGGACGTGATTGTA
AGCGGCATAAAGTTACCAAAAGTTGAGTCAGGAGACTGGCTTGTCGTGCA
TGATGTCGGAGGGTACACTCTGGCCTTGTTTTCTCGCTATTGCTCAAGAG
CCGCGCCAGCCGTGGTTGGGTATAGAATAGGAAGAGAGGGAGGGAATGAG
GCAGGGATGGGGGTGACGGTGGAGGTGCTTCAGGGAAGGGAGGCGGGGGA
GAGTGTGTTGGAATTTTGGGGGCCGCGAGGGGAGAGGGAAAGGTAG
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Synonyms
Publications