NO16G01530.1, NO16G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01530.1
Unique NameNO16G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr16:464014..465213 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:464014..465213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01530.1 vs.
Match: WP_009548948.1 (filamentous hemagglutinin N-terminal domain-containing protein [Burkholderiales bacterium JOSHI_001]; EHR69803.1 filamentous hemagglutinin family N-terminal domain protein [Burkholderiales bacterium JOSHI_001])

HSP 1 Score: 204.5 bits (519), Expect = 6.000e-49
Identity = 208/376 (55.32%), Postives = 234/376 (62.23%), Query Frame = 0 
Query:   26 TSAPTPVPTKAAYTGLTLSPTASPTKSVYTSQPTSSIVTLEAPTVAPTAIITTAPTSAPTVAPTAAPTAAPTAAPSATPTAAPTTTPTAAPTAAPTVAPTAAPTAAPTVAPTGTPTAVPTAAPTSTPTVAPTAFPTAAPTAMIYTPPPTAAPTVAPTVSPTASPTEMIYTPPPTAAPTLAPTATPTAAPTAAPTVAPTVAPTAFPTAAPTAMIYTPPPTAAPTLAPTATPTAAPTASPTVAPTVSPTA-----SPTEMIYTP--PPTT------APTLAPTASPTAAPTASPTVAPTAAPTTTPTAAATAAPTSIPEISWGPPEPTQTITLAPTPSPTEKSVYSAPASEPNAVDEPVVYSPAKPSSPAPTVLPTSA 389
            T+APTP PT A     T +PT +PT +  T  PT       APT APTA  T APT+APT APT APTAAPT AP+A PT APT  PTAAPT APT APT APT APT APT  PTA PT APT+ PT APT  PTAAPT     P PTAAPT APT +PTA+PT    TP PTAAPT APTA PT APT APT APT APT  PTAAPT     P PTAAPT APT  PTAAPT +PT APT +P         T +  TP  PP+T      APT APT +PTAAPT +PT APT APTT PT A T APT  P    GPP    T ++    +    +  + P++ P+A   P   +P    +PAPT+ PT A
Sbjct: 2515 TAAPTPAPTSAPTAAPTPAPTPAPTAAP-TPAPTP------APTAAPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTAAPTPAPTPVPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTAAPTPAPTAAPTPAPTPAPTAAPT-----PAPTAAPTPAPTPAPTAAPTPAP-TPAPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTPAPTAAPT-----PAPTAAPTPAPTPAPTAAPTPAPTPAPTAAPGTPSLGNGSTTVGVTPPAPPSTVPSASPAPTPAPTPAPTAAPTPAPTAAPTPAPTTAPTPAPTPAPTQAPAPPPGPPAAPGTPSVGNGTTTVGVTPPAPPSTLPSASPVPTP-APTPAPTPAPTLAPTLA 2871
The following BLAST results are available for this feature:
BLAST of NO16G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_009548948.16.000e-4955.32filamentous hemagglutinin N-terminal domain-contai... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01530NO16G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01530.1NO16G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01530.1.cds1NO16G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01530.1 ID=NO16G01530.1|Name=NO16G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCGGC
CGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCCGA
CCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTACG
AAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAGGC
ACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGCTC
CCACTGTAGCACCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
TCTGCTACTCCTACTGCTGCGCCTACTACAACCCCCACGGCCGCTCCTAC
GGCTGCCCCAACGGTTGCCCCCACAGCCGCTCCTACGGCCGCTCCTACGG
TTGCCCCAACGGGTACGCCTACTGCTGTACCTACTGCCGCCCCCACTTCA
ACCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGCCCACCGCGAT
GATCTATACTCCTCCTCCCACCGCTGCCCCCACGGTTGCTCCTACGGTTT
CCCCTACGGCGTCGCCCACCGAGATGATCTATACTCCTCCTCCCACCGCT
GCCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCTACGGCCGC
TCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGC
CCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACACTGGCG
CCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCC
TACGGTTTCCCCTACGGCGTCGCCTACCGAGATGATCTATACTCCTCCTC
CCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCGGCCCCG
ACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCACTCCTAC
CGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTTGGGGCC
CGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCACCGACC
GAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGTAGATGA
ACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCACGGTGT
TGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGCGCCTAG
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protein sequence of NO16G01530.1

>NO16G01530.1-protein ID=NO16G01530.1-protein|Name=NO16G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MRSLKPSLMCSLALFAAAVLADEGDTSAPTPVPTKAAYTGLTLSPTASPT
KSVYTSQPTSSIVTLEAPTVAPTAIITTAPTSAPTVAPTAAPTAAPTAAP
SATPTAAPTTTPTAAPTAAPTVAPTAAPTAAPTVAPTGTPTAVPTAAPTS
TPTVAPTAFPTAAPTAMIYTPPPTAAPTVAPTVSPTASPTEMIYTPPPTA
APTLAPTATPTAAPTAAPTVAPTVAPTAFPTAAPTAMIYTPPPTAAPTLA
PTATPTAAPTASPTVAPTVSPTASPTEMIYTPPPTTAPTLAPTASPTAAP
TASPTVAPTAAPTTTPTAAATAAPTSIPEISWGPPEPTQTITLAPTPSPT
EKSVYSAPASEPNAVDEPVVYSPAKPSSPAPTVLPTSATNGRHLRRGSA*
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mRNA from alignment at chr16:464014..465213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01530.1 ID=NO16G01530.1|Name=NO16G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at chr16:464014..465213- (Nannochloropsis oceanica)
ATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCGGC
CGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCCGA
CCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTACG
AAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAGGC
ACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGCTC
CCACTGTAGCACCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
TCTGCTACTCCTACTGCTGCGCCTACTACAACCCCCACGGCCGCTCCTAC
GGCTGCCCCAACGGTTGCCCCCACAGCCGCTCCTACGGCCGCTCCTACGG
TTGCCCCAACGGGTACGCCTACTGCTGTACCTACTGCCGCCCCCACTTCA
ACCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGCCCACCGCGAT
GATCTATACTCCTCCTCCCACCGCTGCCCCCACGGTTGCTCCTACGGTTT
CCCCTACGGCGTCGCCCACCGAGATGATCTATACTCCTCCTCCCACCGCT
GCCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCTACGGCCGC
TCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGC
CCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACACTGGCG
CCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCC
TACGGTTTCCCCTACGGCGTCGCCTACCGAGATGATCTATACTCCTCCTC
CCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCGGCCCCG
ACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCACTCCTAC
CGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTTGGGGCC
CGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCACCGACC
GAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGTAGATGA
ACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCACGGTGT
TGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGCGCCTAG
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Coding sequence (CDS) from alignment at chr16:464014..465213-

>NO16G01530.1 ID=NO16G01530.1|Name=NO16G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr16:464014..465213- (Nannochloropsis oceanica)
ATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCGGC
CGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCCGA
CCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTACG
AAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAGGC
ACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGCTC
CCACTGTAGCACCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
TCTGCTACTCCTACTGCTGCGCCTACTACAACCCCCACGGCCGCTCCTAC
GGCTGCCCCAACGGTTGCCCCCACAGCCGCTCCTACGGCCGCTCCTACGG
TTGCCCCAACGGGTACGCCTACTGCTGTACCTACTGCCGCCCCCACTTCA
ACCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGCCCACCGCGAT
GATCTATACTCCTCCTCCCACCGCTGCCCCCACGGTTGCTCCTACGGTTT
CCCCTACGGCGTCGCCCACCGAGATGATCTATACTCCTCCTCCCACCGCT
GCCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCTACGGCCGC
TCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAGCGGCGC
CCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACACTGGCG
CCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCC
TACGGTTTCCCCTACGGCGTCGCCTACCGAGATGATCTATACTCCTCCTC
CCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCGGCCCCG
ACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCACTCCTAC
CGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTTGGGGCC
CGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCACCGACC
GAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGTAGATGA
ACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCACGGTGT
TGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGCGCCTAG
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Synonyms
Publications