NO13G02980.2, NO13G02980.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02980.2
Unique NameNO13G02980.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2759
Alignment locationchr13:831392..834826 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:831392..834826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02980.2 vs.
Match: CBN78569.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 343.6 bits (880), Expect = 5.800e-91
Identity = 171/269 (63.57%), Postives = 205/269 (76.21%), Query Frame = 0 
Query:   11 SSTGDQPKPNIGEILKKSGMRALGGGMAGAAAMGINVGALMWLRTTVNYQYRKGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFAETKDLPVLVKTAAASATAASWRIFLMPVDTLKTIKQVEGKDGFKVLMAKMKIHGPGVMYHGALAAFAANLLGHYPWFATYNYMQEALPKTDDFKLKLCRNAVIGFSASAISDTVSNSVRVVKVYKQANAEHITYPDAVKRIIAEDGLIGLFGRGLSTKIFSNG 280
            SST  +  P   EIL KS  RALGGG AGA AMGINVG LMW+RTT+NYQ R G     A +TLY+ GGI RFY+G+ PAL+QGP SRFGDTAAN GV+ L++S+  TK+LPV  KT  AS  AA WRIFLMPVDT KTI QVEGK+GF  L+ K+K+ GP V+YHGALAA +A L+GHYPWF TYNY+QE +PK D    KL RN +IGF +S +SDT SNS+RVVKVYKQ++ E +TY  AV+ +IA+DGL+GLFGRGL TKI +NG
Sbjct:    2 SSTSPKAPPTTQEILDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYESTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYVQAVRDVIAKDGLVGLFGRGLKTKIMANG 270
The following BLAST results are available for this feature:
BLAST of NO13G02980.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78569.15.800e-9163.57conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02980NO13G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02980.2NO13G02980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02980.2.cds1NO13G02980.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02980.2.cds2NO13G02980.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02980.2.cds3NO13G02980.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02980.2.cds4NO13G02980.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02980.2.cds5NO13G02980.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02980.2 ID=NO13G02980.2|Name=NO13G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=2759bp
ACAGGTCTCGCGTCGTTTTCCGGGCTTCTGAGCCTCTACAAAGGGAAAGA
AAAACCAAAGGAAGGCATGTTGAGCCCGACGGATCATGGTCGTCGTGTGG
TCGGGTCAACACTAAAGCCCACGGCAAACGCACGCCACGCCACCCCCAAG
CCCTCTTCGGCATGCTGTATCATAAGGCCTTAGGTCTCGACATGTATCCT
TGCTGGTTCGGCGAGGACGACTTTGTCTCATCTCTCTCGTCGCTTTCTGG
ATCGAGTCGTCGCCGTTGCCTTGCGAGCAGCGAGGAGCAAGTACGCCTCG
CTTTGATATTTATTGGTATGGCTGATGGTGCCTGTGGATGTGCTGAGGCG
GCAACTCCTGCCTTGTGTTTTCAAAGAGCGCTGTGGAGATGGAACGCCCC
TTGATTGTCGATGTGTCGCAGCTGCTGCAGTAGCACCTGTCGCTTCGCTG
CAGTACACAATGCAAGTGATCGTCGCCTTGCTGTTATTGGTATGGGGCCA
ATGCAGCAACTGGCTCAGTACATTTGAGGGAATGAAGCTGGAGGGTGGTT
GGGCTGCTGCCATAGCTGCTGCGTCCCTTGGGGGAGGGGAGGAGAGGAGT
GGGGAGTGGGGGCTACCCACGCACGAATTCATTTTCTTTCCTCCTCGGAA
TAAGACAGATAGTCAAGCGCTCACTGAAACAAACGTGCGCATGGCAGCAG
ACATGCCCAACTTTTGGGCCTAAGCACCGTGTCCTCGGATAGCTCCGTGG
CCAAGCCCTTCCCCTCCATTACTTCGCTCACCCCACTCCTCCCTTCCCAC
TCCATCATCATCCACAGCACCTTTTTTTTTCCTTTCCGACCATGGCGTCC
ACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACCCAAGCCGAA
CATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGGGAGGTGGGA
TGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTAATGTGGCTC
CGGACCACGGTGAACTACCAGTACCGTAAGGGCACCACCATGCGCGTGGC
CCTCAAGACGCTCTACGCCGACGGTGGCATTCCCCGCTTTTATCAAGGCC
TCCTTCCCGCCCTTGTCCAGGGACCGGCCTCTCGATTCGGAGACACGGCG
GCAAATGCGGGGGTGATCACGCTGCTGGACTCGTTCGCAGAGACCAAGGA
CCTCCCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTGCCGCCTCCT
GGCGCATTTTCCTCATGCCTGTTGATACTTTGAAGACGATCAAGCAAGTG
GAGGGCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAAGATTCACGG
GCCGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCGCTAATTTAC
TAGGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAGGAGGCCCTG
CCCAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGCTGTCATCGG
TTTCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCGTCCGCGTGG
TGAAGGTCTACAAGCAAGCCAACGCGGAGCACATCACTTACCCCGACGCC
GTGAAGCGCATCATTGCTGAGGACGGGCTCATCGGTCTTTTCGGGCGGGG
GCTCAGCACCAAGATTTTTTCCAACGGTAAGTAAGCGTGCCGTCCCTCTC
TCCTTGTCTTCTCTACCTCCCTCTCGACCGCCCTTGTTGGCGTATGTGTG
AGAATAAGAAGACGAGGGTCGGCGGACGCATCGGACGGGGTCTCATCACT
AAGACTGATAAGGTACAATTGTCTCTCCCTTTTCGAGAAGACGTTACTAC
ATTCTCCTTCCCATCCCTCTTTCTCTTCTCCCTTCTCTCTCGATCTACTT
TCCGTCCGCTTGCCCACAGCCATTGCCTGACCATCTTCCACCCATTTCTC
CCTTCCTCCCTCCCTCCTTCCCTTCCTCCCTCAGGGTTGCAAGGACTCGT
GTTTTCAGTCTTGTGGAAGCTGATCGACGACCACCTGAAGGAGAAAGCTA
TCCTCTAAGGGACGGGAGGAAGGCAGGGCGGGAGGGGCGGCTAATTTGTA
GAAGGCCAAGGCCGTGACTGTTGCCGATGGCGGGAGGAACAGAAACGGGC
CGGAAAAGAAGAAGTTGAGGAAAACAAAATGCGTGGTAAAAAAATAAAGT
GGATGAAGAGAAGAACAGGGAAGAGGGAAATATAAGACACGTCTTGGAAG
AAAGAGAGGTTGTTGCCGGTAGATCCTCTTGCGGCATCTAGCTCCTCAAG
ATTAACACCACTTACCATCAAATCAAATAGAACGGCCTCCGCGGCCATTA
AGACAAAGAACGATAAGCAGGCGCCATGAAGAATGGAAACGGGTTACATT
CGCGGCATAAACGTTTAAAGTATGTGGCTGTAGTGGCCTGTGCGTCTGTG
CGTATGTGTGTGAGCATGATTGACAGCAAAAGTGACGGTAACTGAAGGAG
ATGAGGGGGAAATCAGCCCAGTAGTTCAATTTCGTTCGAGGGATGGAGTG
GAGGAGTATAACAGGAGACGAGGAGAAGGTAACTTAAGATTAAAGTAAGT
GTCGAGGCGAAAAGGAAGAAGTATAAAAAGAAGAAGAAACTCACACACAT
ACATGCGCGCATATACACAAGAACACGCGCCCCCCCCCTCCACTTCCAAA
CAAATGACACAAAAACATTCACTGACAGCACAAACGCAAATCATATGGCT
AAGGCAACC
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protein sequence of NO13G02980.2

>NO13G02980.2-protein ID=NO13G02980.2-protein|Name=NO13G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MASTAPSASPSSTGDQPKPNIGEILKKSGMRALGGGMAGAAAMGINVGAL
MWLRTTVNYQYRKGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFG
DTAANAGVITLLDSFAETKDLPVLVKTAAASATAASWRIFLMPVDTLKTI
KQVEGKDGFKVLMAKMKIHGPGVMYHGALAAFAANLLGHYPWFATYNYMQ
EALPKTDDFKLKLCRNAVIGFSASAISDTVSNSVRVVKVYKQANAEHITY
PDAVKRIIAEDGLIGLFGRGLSTKIFSNGK*
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mRNA from alignment at chr13:831392..834826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02980.2 ID=NO13G02980.2|Name=NO13G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=3435bp|location=Sequence derived from alignment at chr13:831392..834826+ (Nannochloropsis oceanica)
ACAGGTCTCGCGTCGTTTTCCGGGCTTCTGAGCCTCTACAAAGGGAAAGA
AAAACCAAAGGAAGGCATGTTGAGCCCGACGGATCATGGTCGTCGTGTGG
TCGGGTCAACACTAAAGCCCACGGCAAACGCACGCCACGCCACCCCCAAG
CCCTCTTCGGCATGCTGTATCATAAGGCCTTAGGTCTCGACATGTATCCT
TGCTGGTTCGGCGAGGACGACTTTGTCTCATCTCTCTCGTCGCTTTCTGG
ATCGAGTCGTCGCCGTTGCCTTGCGAGCAGCGAGGAGCAAGTACGCCTCG
CTTTGATATTTATTGGTATGGCTGATGGTGCCTGTGGATGTGCTGAGGCG
GCAACTCCTGCCTTGTGTTTTCAAAGAGCGCTGTGGAGATGGAACGCCCC
TTGATTGTCGATGTGTCGCAGCTGCTGCAGTAGCACCTGTCGCTTCGCTG
CAGTACACAATGCAAGTGATCGTCGCCTTGCTGTTATTGGTATGGGGCCA
ATGCAGCAACTGGCTCAGTACATTTGAGGGAATGAAGCTGGAGGGTGGTT
GGGCTGCTGCCATAGCTGCTGCGTCCCTTGGGGGAGGGGAGGAGAGGAGT
GGGGAGTGGGGGCTACCCACGCACGAATTCATTTTCTTTCCTCCTCGGAA
TAAGACAGATAGTCAAGCGCTCACTGAAACAAACGTGCGCATGGCAGCAG
ACATGCCCAACTTTTGGGCCTAAGCACCGTGTCCTCGGATAGCTCCGTGG
CCAAGCCCTTCCCCTCCATTACTTCGCTCACCCCACTCCTCCCTTCCCAC
TCCATCATCATCCACAGCACCTTTTTTTTTCCTTTCCGACCATGGCGTCC
ACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACCCAAGCCGAA
CATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGGGAGGTGGGA
TGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTAATGTGGCTC
CGGACCACGGTGAACTACCAGTACCGTAAGGTGAGGAGATAATGTATGTA
TTATCATAATGCACGTGTGTGTCTGATCACATCGTCCTCGCTCCCCTTTC
TCCTCCAGGGCACCACCATGCGCGTGGCCCTCAAGACGCTCTACGCCGAC
GGTGGCATTCCCCGCTTTTATCAAGGCCTCCTTCCCGCCCTTGTCCAGGG
ACCGGCCTCTCGATTCGGAGACACGGCGGCAAATGCGGGGGTGATCACGC
TGCTGGACTCGTTCGCAGAGACCAAGGTGATGAGGAAGGGGAAAGGGGAA
GGGGGGGCGAATGGGAGGGAGAGAAGGAAGGCAGGGGTCCATATCTTCAT
GTCTTTCTCTTCGGCTTAATTAATTTCTGTATCTTTAAGAAGAGTAGCAT
AAAATGCCTTTTTTCTTTGCTCTTTCCCCCCTTATTGCCGCCTCGCTGCT
CATCATCGTCATCGTCCTCCCTCCCCTCTCTCTCCTTTCCCCAGGACCTC
CCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTGCCGCCTCCTGGCG
CATTTTCCTCATGCCTGTTGATACTTTGAAGACGATCAAGCAAGTGGAGG
GCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAAGGTCCGTCCCCTC
CCTCCCCCCTGCCCCCCTTCTCATCTCCTTTTGTTGCTGGTCTGCGACCT
ACATAAAAAAATATGGCGTATACACATATGTTCACACACACTCACACATA
CATACACATCTTCATGCATGTATACATACGTATATACATACACATATACA
TATATATATTCATACATACATGCCTACATATACACCGTAGATTCACGGGC
CGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCGCTAATTTACTA
GGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAGGAGGCCCTGCC
CAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGCTGTCATCGGTT
TCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCGTCCGCGTGGTG
AAGGTGAGGCAGGAGGGAGGGAGGGAGGGTGAGAGCGAGGGAGGGTGACA
GCGGCCGATTATTTGCCGTGTTTCTCTTCTTTTCGCTCTATTCTTTTTCC
CCTTCTCCAAATCTGAACGGCCTGCCACTTATGTCACTCCTTCCTCCCCT
CGCTCCCCCCCTCCCTCCCCCCCTCCCTCAGGTCTACAAGCAAGCCAACG
CGGAGCACATCACTTACCCCGACGCCGTGAAGCGCATCATTGCTGAGGAC
GGGCTCATCGGTCTTTTCGGGCGGGGGCTCAGCACCAAGATTTTTTCCAA
CGGTAAGTAAGCGTGCCGTCCCTCTCTCCTTGTCTTCTCTACCTCCCTCT
CGACCGCCCTTGTTGGCGTATGTGTGAGAATAAGAAGACGAGGGTCGGCG
GACGCATCGGACGGGGTCTCATCACTAAGACTGATAAGGTACAATTGTCT
CTCCCTTTTCGAGAAGACGTTACTACATTCTCCTTCCCATCCCTCTTTCT
CTTCTCCCTTCTCTCTCGATCTACTTTCCGTCCGCTTGCCCACAGCCATT
GCCTGACCATCTTCCACCCATTTCTCCCTTCCTCCCTCCCTCCTTCCCTT
CCTCCCTCAGGGTTGCAAGGACTCGTGTTTTCAGTCTTGTGGAAGCTGAT
CGACGACCACCTGAAGGAGAAAGCTATCCTCTAAGGGACGGGAGGAAGGC
AGGGCGGGAGGGGCGGCTAATTTGTAGAAGGCCAAGGCCGTGACTGTTGC
CGATGGCGGGAGGAACAGAAACGGGCCGGAAAAGAAGAAGTTGAGGAAAA
CAAAATGCGTGGTAAAAAAATAAAGTGGATGAAGAGAAGAACAGGGAAGA
GGGAAATATAAGACACGTCTTGGAAGAAAGAGAGGTTGTTGCCGGTAGAT
CCTCTTGCGGCATCTAGCTCCTCAAGATTAACACCACTTACCATCAAATC
AAATAGAACGGCCTCCGCGGCCATTAAGACAAAGAACGATAAGCAGGCGC
CATGAAGAATGGAAACGGGTTACATTCGCGGCATAAACGTTTAAAGTATG
TGGCTGTAGTGGCCTGTGCGTCTGTGCGTATGTGTGTGAGCATGATTGAC
AGCAAAAGTGACGGTAACTGAAGGAGATGAGGGGGAAATCAGCCCAGTAG
TTCAATTTCGTTCGAGGGATGGAGTGGAGGAGTATAACAGGAGACGAGGA
GAAGGTAACTTAAGATTAAAGTAAGTGTCGAGGCGAAAAGGAAGAAGTAT
AAAAAGAAGAAGAAACTCACACACATACATGCGCGCATATACACAAGAAC
ACGCGCCCCCCCCCTCCACTTCCAAACAAATGACACAAAAACATTCACTG
ACAGCACAAACGCAAATCATATGGCTAAGGCAACC
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Coding sequence (CDS) from alignment at chr13:831392..834826+

>NO13G02980.2 ID=NO13G02980.2|Name=NO13G02980.2|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr13:831392..834826+ (Nannochloropsis oceanica)
ATGGCGTCCACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACC
CAAGCCGAACATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGG
GAGGTGGGATGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTA
ATGTGGCTCCGGACCACGGTGAACTACCAGTACCGTAAGGGCACCACCAT
GCGCGTGGCCCTCAAGACGCTCTACGCCGACGGTGGCATTCCCCGCTTTT
ATCAAGGCCTCCTTCCCGCCCTTGTCCAGGGACCGGCCTCTCGATTCGGA
GACACGGCGGCAAATGCGGGGGTGATCACGCTGCTGGACTCGTTCGCAGA
GACCAAGGACCTCCCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTG
CCGCCTCCTGGCGCATTTTCCTCATGCCTGTTGATACTTTGAAGACGATC
AAGCAAGTGGAGGGCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAA
GATTCACGGGCCGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCG
CTAATTTACTAGGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAG
GAGGCCCTGCCCAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGC
TGTCATCGGTTTCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCG
TCCGCGTGGTGAAGGTCTACAAGCAAGCCAACGCGGAGCACATCACTTAC
CCCGACGCCGTGAAGCGCATCATTGCTGAGGACGGGCTCATCGGTCTTTT
CGGGCGGGGGCTCAGCACCAAGATTTTTTCCAACGGTAAGTAA
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Synonyms
Publications