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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:831392..834826 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02980.1 vs.
Match: CBN78569.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 367.9 bits (943), Expect = 3.100e-98 Identity = 183/287 (63.76%), Postives = 220/287 (76.66%), Query Frame = 0
Query: 11 SSTGDQPKPNIGEILKKSGMRALGGGMAGAAAMGINVGALMWLRTTVNYQYRKGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFAETKDLPVLVKTAAASATAASWRIFLMPVDTLKTIKQVEGKDGFKVLMAKMKIHGPGVMYHGALAAFAANLLGHYPWFATYNYMQEALPKTDDFKLKLCRNAVIGFSASAISDTVSNSVRVVKVYKQANAEHITYPDAVKRIIAEDGLIGLFGRGLSTKIFSNGLQGLVFSVLWKLIDDHLK 298
SST + P EIL KS RALGGG AGA AMGINVG LMW+RTT+NYQ R G A +TLY+ GGI RFY+G+ PAL+QGP SRFGDTAAN GV+ L++S+ TK+LPV KT AS AA WRIFLMPVDT KTI QVEGK+GF L+ K+K+ GP V+YHGALAA +A L+GHYPWF TYNY+QE +PK D KL RN +IGF +S +SDT SNS+RVVKVYKQ++ E +TY AV+ +IA+DGL+GLFGRGL TKI +NG+QGL+FSVLWKL D +K
Sbjct: 2 SSTSPKAPPTTQEILDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAFRTLYSQGGIGRFYRGVGPALIQGPMSRFGDTAANTGVLALMESYESTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYVQAVRDVIAKDGLVGLFGRGLKTKIMANGMQGLMFSVLWKLSKDFVK 288
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02980.1 ID=NO13G02980.1|Name=NO13G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp ACAGGTCTCGCGTCGTTTTCCGGGCTTCTGAGCCTCTACAAAGGGAAAGA AAAACCAAAGGAAGGCATGTTGAGCCCGACGGATCATGGTCGTCGTGTGG TCGGGTCAACACTAAAGCCCACGGCAAACGCACGCCACGCCACCCCCAAG CCCTCTTCGGCATGCTGTATCATAAGGCCTTAGGTCTCGACATGTATCCT TGCTGGTTCGGCGAGGACGACTTTGTCTCATCTCTCTCGTCGCTTTCTGG ATCGAGTCGTCGCCGTTGCCTTGCGAGCAGCGAGGAGCAAGTACGCCTCG CTTTGATATTTATTGGTATGGCTGATGGTGCCTGTGGATGTGCTGAGGCG GCAACTCCTGCCTTGTGTTTTCAAAGAGCGCTGTGGAGATGGAACGCCCC TTGATTGTCGATGTGTCGCAGCTGCTGCAGTAGCACCTGTCGCTTCGCTG CAGTACACAATGCAAGTGATCGTCGCCTTGCTGTTATTGGTATGGGGCCA ATGCAGCAACTGGCTCAGTACATTTGAGGGAATGAAGCTGGAGGGTGGTT GGGCTGCTGCCATAGCTGCTGCGTCCCTTGGGGGAGGGGAGGAGAGGAGT GGGGAGTGGGGGCTACCCACGCACGAATTCATTTTCTTTCCTCCTCGGAA TAAGACAGATAGTCAAGCGCTCACTGAAACAAACGTGCGCATGGCAGCAG ACATGCCCAACTTTTGGGCCTAAGCACCGTGTCCTCGGATAGCTCCGTGG CCAAGCCCTTCCCCTCCATTACTTCGCTCACCCCACTCCTCCCTTCCCAC TCCATCATCATCCACAGCACCTTTTTTTTTCCTTTCCGACCATGGCGTCC ACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACCCAAGCCGAA CATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGGGAGGTGGGA TGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTAATGTGGCTC CGGACCACGGTGAACTACCAGTACCGTAAGGGCACCACCATGCGCGTGGC CCTCAAGACGCTCTACGCCGACGGTGGCATTCCCCGCTTTTATCAAGGCC TCCTTCCCGCCCTTGTCCAGGGACCGGCCTCTCGATTCGGAGACACGGCG GCAAATGCGGGGGTGATCACGCTGCTGGACTCGTTCGCAGAGACCAAGGA CCTCCCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTGCCGCCTCCT GGCGCATTTTCCTCATGCCTGTTGATACTTTGAAGACGATCAAGCAAGTG GAGGGCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAAGATTCACGG GCCGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCGCTAATTTAC TAGGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAGGAGGCCCTG CCCAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGCTGTCATCGG TTTCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCGTCCGCGTGG TGAAGGTCTACAAGCAAGCCAACGCGGAGCACATCACTTACCCCGACGCC GTGAAGCGCATCATTGCTGAGGACGGGCTCATCGGTCTTTTCGGGCGGGG GCTCAGCACCAAGATTTTTTCCAACGGGTTGCAAGGACTCGTGTTTTCAG TCTTGTGGAAGCTGATCGACGACCACCTGAAGGAGAAAGCTATCCTCTAA GGGACGGGAGGAAGGCAGGGCGGGAGGGGCGGCTAATTTGTAGAAGGCCA AGGCCGTGACTGTTGCCGATGGCGGGAGGAACAGAAACGGGCCGGAAAAG AAGAAGTTGAGGAAAACAAAATGCGTGGTAAAAAAATAAAGTGGATGAAG AGAAGAACAGGGAAGAGGGAAATATAAGACACGTCTTGGAAGAAAGAGAG GTTGTTGCCGGTAGATCCTCTTGCGGCATCTAGCTCCTCAAGATTAACAC CACTTACCATCAAATCAAATAGAACGGCCTCCGCGGCCATTAAGACAAAG AACGATAAGCAGGCGCCATGAAGAATGGAAACGGGTTACATTCGCGGCAT AAACGTTTAAAGTATGTGGCTGTAGTGGCCTGTGCGTCTGTGCGTATGTG TGTGAGCATGATTGACAGCAAAAGTGACGGTAACTGAAGGAGATGAGGGG GAAATCAGCCCAGTAGTTCAATTTCGTTCGAGGGATGGAGTGGAGGAGTA TAACAGGAGACGAGGAGAAGGTAACTTAAGATTAAAGTAAGTGTCGAGGC GAAAAGGAAGAAGTATAAAAAGAAGAAGAAACTCACACACATACATGCGC GCATATACACAAGAACACGCGCCCCCCCCCTCCACTTCCAAACAAATGAC ACAAAAACATTCACTGACAGCACAAACGCAAATCATATGGCTAAGGCAAC C back to topprotein sequence of NO13G02980.1 >NO13G02980.1-protein ID=NO13G02980.1-protein|Name=NO13G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp MASTAPSASPSSTGDQPKPNIGEILKKSGMRALGGGMAGAAAMGINVGAL MWLRTTVNYQYRKGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFG DTAANAGVITLLDSFAETKDLPVLVKTAAASATAASWRIFLMPVDTLKTI KQVEGKDGFKVLMAKMKIHGPGVMYHGALAAFAANLLGHYPWFATYNYMQ EALPKTDDFKLKLCRNAVIGFSASAISDTVSNSVRVVKVYKQANAEHITY PDAVKRIIAEDGLIGLFGRGLSTKIFSNGLQGLVFSVLWKLIDDHLKEKA IL* back to topmRNA from alignment at chr13:831392..834826+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02980.1 ID=NO13G02980.1|Name=NO13G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=3435bp|location=Sequence derived from alignment at chr13:831392..834826+ (Nannochloropsis oceanica) ACAGGTCTCGCGTCGTTTTCCGGGCTTCTGAGCCTCTACAAAGGGAAAGA
AAAACCAAAGGAAGGCATGTTGAGCCCGACGGATCATGGTCGTCGTGTGG
TCGGGTCAACACTAAAGCCCACGGCAAACGCACGCCACGCCACCCCCAAG
CCCTCTTCGGCATGCTGTATCATAAGGCCTTAGGTCTCGACATGTATCCT
TGCTGGTTCGGCGAGGACGACTTTGTCTCATCTCTCTCGTCGCTTTCTGG
ATCGAGTCGTCGCCGTTGCCTTGCGAGCAGCGAGGAGCAAGTACGCCTCG
CTTTGATATTTATTGGTATGGCTGATGGTGCCTGTGGATGTGCTGAGGCG
GCAACTCCTGCCTTGTGTTTTCAAAGAGCGCTGTGGAGATGGAACGCCCC
TTGATTGTCGATGTGTCGCAGCTGCTGCAGTAGCACCTGTCGCTTCGCTG
CAGTACACAATGCAAGTGATCGTCGCCTTGCTGTTATTGGTATGGGGCCA
ATGCAGCAACTGGCTCAGTACATTTGAGGGAATGAAGCTGGAGGGTGGTT
GGGCTGCTGCCATAGCTGCTGCGTCCCTTGGGGGAGGGGAGGAGAGGAGT
GGGGAGTGGGGGCTACCCACGCACGAATTCATTTTCTTTCCTCCTCGGAA
TAAGACAGATAGTCAAGCGCTCACTGAAACAAACGTGCGCATGGCAGCAG
ACATGCCCAACTTTTGGGCCTAAGCACCGTGTCCTCGGATAGCTCCGTGG
CCAAGCCCTTCCCCTCCATTACTTCGCTCACCCCACTCCTCCCTTCCCAC
TCCATCATCATCCACAGCACCTTTTTTTTTCCTTTCCGACCATGGCGTCC
ACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACCCAAGCCGAA
CATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGGGAGGTGGGA
TGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTAATGTGGCTC
CGGACCACGGTGAACTACCAGTACCGTAAGGTGAGGAGATAATGTATGTA
TTATCATAATGCACGTGTGTGTCTGATCACATCGTCCTCGCTCCCCTTTC
TCCTCCAGGGCACCACCATGCGCGTGGCCCTCAAGACGCTCTACGCCGAC
GGTGGCATTCCCCGCTTTTATCAAGGCCTCCTTCCCGCCCTTGTCCAGGG
ACCGGCCTCTCGATTCGGAGACACGGCGGCAAATGCGGGGGTGATCACGC
TGCTGGACTCGTTCGCAGAGACCAAGGTGATGAGGAAGGGGAAAGGGGAA
GGGGGGGCGAATGGGAGGGAGAGAAGGAAGGCAGGGGTCCATATCTTCAT
GTCTTTCTCTTCGGCTTAATTAATTTCTGTATCTTTAAGAAGAGTAGCAT
AAAATGCCTTTTTTCTTTGCTCTTTCCCCCCTTATTGCCGCCTCGCTGCT
CATCATCGTCATCGTCCTCCCTCCCCTCTCTCTCCTTTCCCCAGGACCTC
CCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTGCCGCCTCCTGGCG
CATTTTCCTCATGCCTGTTGATACTTTGAAGACGATCAAGCAAGTGGAGG
GCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAAGGTCCGTCCCCTC
CCTCCCCCCTGCCCCCCTTCTCATCTCCTTTTGTTGCTGGTCTGCGACCT
ACATAAAAAAATATGGCGTATACACATATGTTCACACACACTCACACATA
CATACACATCTTCATGCATGTATACATACGTATATACATACACATATACA
TATATATATTCATACATACATGCCTACATATACACCGTAGATTCACGGGC
CGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCGCTAATTTACTA
GGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAGGAGGCCCTGCC
CAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGCTGTCATCGGTT
TCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCGTCCGCGTGGTG
AAGGTGAGGCAGGAGGGAGGGAGGGAGGGTGAGAGCGAGGGAGGGTGACA
GCGGCCGATTATTTGCCGTGTTTCTCTTCTTTTCGCTCTATTCTTTTTCC
CCTTCTCCAAATCTGAACGGCCTGCCACTTATGTCACTCCTTCCTCCCCT
CGCTCCCCCCCTCCCTCCCCCCCTCCCTCAGGTCTACAAGCAAGCCAACG
CGGAGCACATCACTTACCCCGACGCCGTGAAGCGCATCATTGCTGAGGAC
GGGCTCATCGGTCTTTTCGGGCGGGGGCTCAGCACCAAGATTTTTTCCAA
CGGTAAGTAAGCGTGCCGTCCCTCTCTCCTTGTCTTCTCTACCTCCCTCT
CGACCGCCCTTGTTGGCGTATGTGTGAGAATAAGAAGACGAGGGTCGGCG
GACGCATCGGACGGGGTCTCATCACTAAGACTGATAAGGTACAATTGTCT
CTCCCTTTTCGAGAAGACGTTACTACATTCTCCTTCCCATCCCTCTTTCT
CTTCTCCCTTCTCTCTCGATCTACTTTCCGTCCGCTTGCCCACAGCCATT
GCCTGACCATCTTCCACCCATTTCTCCCTTCCTCCCTCCCTCCTTCCCTT
CCTCCCTCAGGGTTGCAAGGACTCGTGTTTTCAGTCTTGTGGAAGCTGAT
CGACGACCACCTGAAGGAGAAAGCTATCCTCTAAGGGACGGGAGGAAGGC
AGGGCGGGAGGGGCGGCTAATTTGTAGAAGGCCAAGGCCGTGACTGTTGC
CGATGGCGGGAGGAACAGAAACGGGCCGGAAAAGAAGAAGTTGAGGAAAA
CAAAATGCGTGGTAAAAAAATAAAGTGGATGAAGAGAAGAACAGGGAAGA
GGGAAATATAAGACACGTCTTGGAAGAAAGAGAGGTTGTTGCCGGTAGAT
CCTCTTGCGGCATCTAGCTCCTCAAGATTAACACCACTTACCATCAAATC
AAATAGAACGGCCTCCGCGGCCATTAAGACAAAGAACGATAAGCAGGCGC
CATGAAGAATGGAAACGGGTTACATTCGCGGCATAAACGTTTAAAGTATG
TGGCTGTAGTGGCCTGTGCGTCTGTGCGTATGTGTGTGAGCATGATTGAC
AGCAAAAGTGACGGTAACTGAAGGAGATGAGGGGGAAATCAGCCCAGTAG
TTCAATTTCGTTCGAGGGATGGAGTGGAGGAGTATAACAGGAGACGAGGA
GAAGGTAACTTAAGATTAAAGTAAGTGTCGAGGCGAAAAGGAAGAAGTAT
AAAAAGAAGAAGAAACTCACACACATACATGCGCGCATATACACAAGAAC
ACGCGCCCCCCCCCTCCACTTCCAAACAAATGACACAAAAACATTCACTG
ACAGCACAAACGCAAATCATATGGCTAAGGCAACC back to topCoding sequence (CDS) from alignment at chr13:831392..834826+ >NO13G02980.1 ID=NO13G02980.1|Name=NO13G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr13:831392..834826+ (Nannochloropsis oceanica) ATGGCGTCCACTGCCCCTTCCGCCTCCCCTTCCTCCACGGGTGACCAACC CAAGCCGAACATCGGCGAGATACTGAAAAAGTCGGGTATGCGCGCCCTGG GAGGTGGGATGGCCGGCGCGGCTGCCATGGGTATCAACGTGGGGGCATTA ATGTGGCTCCGGACCACGGTGAACTACCAGTACCGTAAGGGCACCACCAT GCGCGTGGCCCTCAAGACGCTCTACGCCGACGGTGGCATTCCCCGCTTTT ATCAAGGCCTCCTTCCCGCCCTTGTCCAGGGACCGGCCTCTCGATTCGGA GACACGGCGGCAAATGCGGGGGTGATCACGCTGCTGGACTCGTTCGCAGA GACCAAGGACCTCCCCGTCCTGGTCAAGACGGCCGCTGCCTCGGCCACTG CCGCCTCCTGGCGCATTTTCCTCATGCCTGTTGATACTTTGAAGACGATC AAGCAAGTGGAGGGCAAAGATGGCTTCAAGGTGCTCATGGCCAAGATGAA GATTCACGGGCCGGGCGTAATGTACCACGGTGCCCTGGCCGCCTTTGCCG CTAATTTACTAGGGCACTACCCGTGGTTTGCCACCTATAACTACATGCAG GAGGCCCTGCCCAAGACGGATGACTTCAAGTTGAAGCTGTGCCGTAATGC TGTCATCGGTTTCAGTGCCTCGGCCATCTCGGACACTGTCTCCAACAGCG TCCGCGTGGTGAAGGTCTACAAGCAAGCCAACGCGGAGCACATCACTTAC CCCGACGCCGTGAAGCGCATCATTGCTGAGGACGGGCTCATCGGTCTTTT CGGGCGGGGGCTCAGCACCAAGATTTTTTCCAACGGGTTGCAAGGACTCG TGTTTTCAGTCTTGTGGAAGCTGATCGACGACCACCTGAAGGAGAAAGCT ATCCTCTAA back to top
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