NO13G02830.1, NO13G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02830.1
Unique NameNO13G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr13:786888..788105 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:786888..788105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G02830.1 vs.
Match: EWM21954.1 (phosphoribulokinase [Nannochloropsis gaditana])

HSP 1 Score: 688.0 bits (1774), Expect = 1.800e-194
Identity = 332/364 (91.21%), Postives = 347/364 (95.33%), Query Frame = 0 
Query:    1 MVKTAAVGLLALAGLTSAFVPTNTNLRMSNKWVTKAKDASFTRNLMMKLGAGEKVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNTLVSDTTTVICLDDYHANDRGGRKITGRTALEAAEQNFDLMYEQLKALKEGKTVAKPIYNHVNGTLDKPEDVVPTPIVIVEGLHPWYDARVKDLLDYTIYLDISDEIKRAWKIQRDMAERGWTLDQVEAEIEKRKPDFNKFVGPQKEVADAVIQVLPTELTNDPEGKILRVRLIQKDDGKYEPVYLFDQGSTVSWVPCGKQLTCSYPGIKFGSGPDQWFNNAVNIVEMDGQFDNLEELSYVEKHLGNTASKYAGEITAQMLKNKG 365
            MVKTAAV LLALAGL SAFVP  TN R +N+W  KAKD SFTRNLMMKLGA +KVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNTLVSDTTTVICLDDYHANDR GRK+TGRTALEAAEQNFDLMYEQLKALKEGKTVAKPIYNHVNGTLD+PE+VVPTPIVIVEGLHPWYDARVKDLLDYTIYLDISDEIKRAWKIQRDMAERGWTL+QVEAEIEKRKPDFNKFVGPQKEVAD+VIQVLPTELTNDPEGKILRVRLIQK+ G YEPVYLFDQGSTVSW+PCG +LTCSYPGIK GSGPD+WFNNAVN+VEMDGQFD LEEL+YVEKHLGNTASKY GEITAQMLKN+G
Sbjct:    1 MVKTAAVSLLALAGLASAFVPPTTNFRSANRWTIKAKDTSFTRNLMMKLGADDKVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNTLVSDTTTVICLDDYHANDRSGRKVTGRTALEAAEQNFDLMYEQLKALKEGKTVAKPIYNHVNGTLDRPEEVVPTPIVIVEGLHPWYDARVKDLLDYTIYLDISDEIKRAWKIQRDMAERGWTLEQVEAEIEKRKPDFNKFVGPQKEVADSVIQVLPTELTNDPEGKILRVRLIQKETGDYEPVYLFDQGSTVSWIPCGTKLTCSYPGIKLGSGPDRWFNNAVNVVEMDGQFDKLEELAYVEKHLGNTASKYDGEITAQMLKNEG 364
The following BLAST results are available for this feature:
BLAST of NO13G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21954.11.800e-19491.21phosphoribulokinase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02830NO13G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02830.1NO13G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02830.1.cds1NO13G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02830.1 ID=NO13G02830.1|Name=NO13G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
ATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGCTCACCTC
TGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAGTGGGTGA
CCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAAGCTGGGC
GCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCGGGTGCGG
CAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGAAGCAACG
TTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAACTAATACG
CTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACCATGCCAA
TGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAGGCGGCGG
AGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAAGGAGGGC
AAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCTTGGACAA
GCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGGCTGCACC
CTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTATCTACCTG
GACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTGATATGGC
TGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAGAAGCGCA
AGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGCCGATGCC
GTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAGGCAAGAT
CCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAGCCCGTCT
ACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGGGAAGCAG
CTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTGACCAGTG
GTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTCGACAACT
TGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGCCTCCAAG
TACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGGCTCCGGG
TAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTGAAGATTA
GGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTCGGTGAAG
GCGCCGGTGGCGGCTTAA
back to top

protein sequence of NO13G02830.1

>NO13G02830.1-protein ID=NO13G02830.1-protein|Name=NO13G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MVKTAAVGLLALAGLTSAFVPTNTNLRMSNKWVTKAKDASFTRNLMMKLG
AGEKVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNT
LVSDTTTVICLDDYHANDRGGRKITGRTALEAAEQNFDLMYEQLKALKEG
KTVAKPIYNHVNGTLDKPEDVVPTPIVIVEGLHPWYDARVKDLLDYTIYL
DISDEIKRAWKIQRDMAERGWTLDQVEAEIEKRKPDFNKFVGPQKEVADA
VIQVLPTELTNDPEGKILRVRLIQKDDGKYEPVYLFDQGSTVSWVPCGKQ
LTCSYPGIKFGSGPDQWFNNAVNIVEMDGQFDNLEELSYVEKHLGNTASK
YAGEITAQMLKNKGAPGSLNGSGLFQTIVSLKIREVYEKLSGKKVDASVK
APVAA*
back to top

mRNA from alignment at chr13:786888..788105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02830.1 ID=NO13G02830.1|Name=NO13G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at chr13:786888..788105+ (Nannochloropsis oceanica)
ATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGCTCACCTC
TGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAGTGGGTGA
CCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAAGCTGGGC
GCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCGGGTGCGG
CAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGAAGCAACG
TTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAACTAATACG
CTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACCATGCCAA
TGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAGGCGGCGG
AGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAAGGAGGGC
AAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCTTGGACAA
GCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGGCTGCACC
CTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTATCTACCTG
GACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTGATATGGC
TGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAGAAGCGCA
AGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGCCGATGCC
GTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAGGCAAGAT
CCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAGCCCGTCT
ACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGGGAAGCAG
CTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTGACCAGTG
GTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTCGACAACT
TGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGCCTCCAAG
TACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGGCTCCGGG
TAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTGAAGATTA
GGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTCGGTGAAG
GCGCCGGTGGCGGCTTAA
back to top

Coding sequence (CDS) from alignment at chr13:786888..788105+

>NO13G02830.1 ID=NO13G02830.1|Name=NO13G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr13:786888..788105+ (Nannochloropsis oceanica)
ATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGCTCACCTC
TGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAGTGGGTGA
CCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAAGCTGGGC
GCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCGGGTGCGG
CAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGAAGCAACG
TTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAACTAATACG
CTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACCATGCCAA
TGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAGGCGGCGG
AGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAAGGAGGGC
AAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCTTGGACAA
GCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGGCTGCACC
CTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTATCTACCTG
GACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTGATATGGC
TGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAGAAGCGCA
AGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGCCGATGCC
GTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAGGCAAGAT
CCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAGCCCGTCT
ACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGGGAAGCAG
CTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTGACCAGTG
GTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTCGACAACT
TGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGCCTCCAAG
TACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGGCTCCGGG
TAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTGAAGATTA
GGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTCGGTGAAG
GCGCCGGTGGCGGCTTAA
back to top
Synonyms
Publications