NO13G02710.1, NO13G02710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02710.1
Unique NameNO13G02710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1546
Alignment locationchr13:745861..747598 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:745861..747598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02710.1 vs.
Match: EWM21930.1 (Protein of unknown function DUF3611 [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 2.700e-107
Identity = 221/285 (77.54%), Postives = 241/285 (84.56%), Query Frame = 0 
Query:    1 MTSRLLFLGAAAMTLLLSSEAFFFSRMPARLQQASKSPQLALIGHQLSLIPSSISTSKKRFALSSPLKAATLNVDSDPTTSLKNDGLKIELRQFSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVSPSAGSGSPLAARNIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMIRRVVRTAIFINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINPGAGGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAA 286
            ++S L  L  A++ L     A+F S +PARL  A ++  L    H L L P S+  ++K F +   LKAA+LN DSDP  +LK+DGLKIELRQ+SKFLHSTAWFSWWAQVICNTVAGVILFFTNSFV+PS G G  LAA++IFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAM+RRVVRTAI INLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVIN  A GGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAA
Sbjct:    5 LSSFLPCLAVASIFLFSVGHAYFLSNIPARLVHAQQALHL-YPRHNLKLAPPSLFATQKGFGVLPALKAASLNADSDPAATLKSDGLKIELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGG-GPSLAAKSIFSNGYIFAAGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAA 287
The following BLAST results are available for this feature:
BLAST of NO13G02710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21930.12.700e-10777.54Protein of unknown function DUF3611 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02710NO13G02710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02710.1NO13G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02710.1.cds1NO13G02710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02710.1.cds2NO13G02710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02710.1.cds3NO13G02710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02710.1 ID=NO13G02710.1|Name=NO13G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp
CGCAAACCTTTTCACAAAACTACGCCATCGTAACACCGCCACTATGACAG
CAATATGTCACATTTATGCATTACATCAGGTATTGTGAGAATGGTGTGGT
AGCATCGCGGGCATGCGCTTGAAAAAGCAAGGCATCATCGGGCATCCAAT
CACCACGCTGGAGGAAATTTGCTTCTTCTCGCCAACGAATGGAACGGTCG
CGGCGTCATGAGCCTGAAAGGTGGAATGCAATGCAGTCTTTGTCGACATA
ACAAAACACACTCACGGCACCAGTCGCGTACATCATTAAGACAGGAGTGC
CACCTTGGTCTCTTCTATTTCTTTTACTCGGAGCAACACCATGACTTCCC
GCCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTTCTGTCTAGCGAG
GCCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCAGGCTAGCAAATC
ACCGCAGCTGGCTCTCATCGGGCACCAATTGAGCCTGATACCTTCCTCCA
TTTCCACGAGCAAGAAACGCTTTGCCCTAAGCAGCCCACTCAAGGCAGCG
ACACTCAATGTTGACAGTGATCCGACTACCTCCTTGAAAAATGACGGCCT
TAAGATCGAACTGCGTCAATTCTCCAAGTTCCTGCATTCCACTGCCTGGT
TTTCATGGTGGGCCCAGGTTATCTGCAATACCGTCGCAGGCGTCATCCTC
TTCTTCACCAACTCCTTCGTCTCCCCGTCAGCCGGCAGTGGTTCCCCGCT
CGCTGCCCGCAATATCTTCAGCAACGGCTATATCTTCGCAGCTGGCGGCT
TATGCCTGGGTGCTATTTCAATATTTTGGACCTGGGGCTTCACGGGCGTC
GCGAAACGCATCCGTCGTGCAGTTCTTGAGCCCCCGACCTCTCTCGCGAT
GATTCGCCGCGTCGTCCGCACCGCCATTTTTATCAATCTTCTCGGCTTGC
TCACCGCCTTGATTGGAGCAGAGCAGTTTGTGGGTAATCTCATGGCACGT
GTTTTGTCCCAGCAGGGTTTCTCGCCATTGGTCATCAATCCTGGAGCGGG
TGGCGGTGCGATTGCATCACCGACCGTGCAGCCGGTGGACATATTCGTGA
TTCAAGCGAATACTAATATCTTGTTGTCGCATTTCATTTCTTTGGTGAGT
TCATTGTTGTTATTGCTGAGGTATTCTAAGATAAGTCGGGCAGCGGGGGA
GTCGAACTAGGACGGAGGAGGGAAAACAAAGGACGGAGATTGTGGTAGGT
TTGGAGGGAAAGGGAGCGGAGCGGAAGGATGGAGGGTTGTAGATAAATAT
ATAGGGCAGGGAAGAGTCGTGAAAGAAATACGAGGATGGTATCGAAGAGG
GGAAGAGAGAAGGAGGGAAGAAATATGAGCGTTGTCTCGTTCTTTTACGT
GATAAAGTTGTGTGAGTAGGGAAAAAGACGGGGTGGGTAAGCCAGACAAG
TCAAGGGAAGGGGGTGGGGGGATACAATCGATAAGAAAATGCACGAAGAA
AAGATGAAAGAATGGAAAACACCACCTGGGCAGAATATGCGACGAT
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protein sequence of NO13G02710.1

>NO13G02710.1-protein ID=NO13G02710.1-protein|Name=NO13G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MTSRLLFLGAAAMTLLLSSEAFFFSRMPARLQQASKSPQLALIGHQLSLI
PSSISTSKKRFALSSPLKAATLNVDSDPTTSLKNDGLKIELRQFSKFLHS
TAWFSWWAQVICNTVAGVILFFTNSFVSPSAGSGSPLAARNIFSNGYIFA
AGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMIRRVVRTAIFINL
LGLLTALIGAEQFVGNLMARVLSQQGFSPLVINPGAGGGAIASPTVQPVD
IFVIQANTNILLSHFISLVSSLLLLLRYSKISRAAGESN*
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mRNA from alignment at chr13:745861..747598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02710.1 ID=NO13G02710.1|Name=NO13G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at chr13:745861..747598+ (Nannochloropsis oceanica)
CGCAAACCTTTTCACAAAACTACGCCATCGTAACACCGCCACTATGACAG
CAATATGTCACATTTATGCATTACATCAGGTATTGTGAGAATGGTGTGGT
AGCATCGCGGGCATGCGCTTGAAAAAGCAAGGCATCATCGGGCATCCAAT
CACCACGCTGGAGGAAATTTGCTTCTTCTCGCCAACGAATGGAACGGTCG
CGGCGTCATGAGCCTGAAAGGTGGAATGCAATGCAGTCTTTGTCGACATA
ACAAAACACACTCACGGCACCAGTCGCGTACATCATTAAGACAGGAGTGC
CACCTTGGTCTCTTCTATTTCTTTTACTCGGAGCAACACCATGACTTCCC
GCCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTTCTGTCTAGCGAG
GCCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCAGGCTAGCAAATC
ACCGCAGCTGGCTCTCATCGGGTAAGTCGTGGTGGTGGTTTAGATGTTGT
CAGGAAAATTGATTGCTTCCCTTTCTGACACACCTCTTTGCACCTCATCA
CATCGTATCGACTTCTTCTATCGAAAGGCACCAATTGAGCCTGATACCTT
CCTCCATTTCCACGAGCAAGAAACGCTTTGCCCTAAGCAGCCCACTCAAG
GCAGCGACACTCAATGTTGACAGTGATCCGACTACCTCCTTGAAAAATGA
CGGTAAGTTTCTTCCTCCTTTGTCTCACCTGCCTTTCCCCTTGTCCTTCT
GTACGCTAACTCCACCGATCTTACGCTCAACGGCACAGGCCTTAAGATCG
AACTGCGTCAATTCTCCAAGTTCCTGCATTCCACTGCCTGGTTTTCATGG
TGGGCCCAGGTTATCTGCAATACCGTCGCAGGCGTCATCCTCTTCTTCAC
CAACTCCTTCGTCTCCCCGTCAGCCGGCAGTGGTTCCCCGCTCGCTGCCC
GCAATATCTTCAGCAACGGCTATATCTTCGCAGCTGGCGGCTTATGCCTG
GGTGCTATTTCAATATTTTGGACCTGGGGCTTCACGGGCGTCGCGAAACG
CATCCGTCGTGCAGTTCTTGAGCCCCCGACCTCTCTCGCGATGATTCGCC
GCGTCGTCCGCACCGCCATTTTTATCAATCTTCTCGGCTTGCTCACCGCC
TTGATTGGAGCAGAGCAGTTTGTGGGTAATCTCATGGCACGTGTTTTGTC
CCAGCAGGGTTTCTCGCCATTGGTCATCAATCCTGGAGCGGGTGGCGGTG
CGATTGCATCACCGACCGTGCAGCCGGTGGACATATTCGTGATTCAAGCG
AATACTAATATCTTGTTGTCGCATTTCATTTCTTTGGTGAGTTCATTGTT
GTTATTGCTGAGGTATTCTAAGATAAGTCGGGCAGCGGGGGAGTCGAACT
AGGACGGAGGAGGGAAAACAAAGGACGGAGATTGTGGTAGGTTTGGAGGG
AAAGGGAGCGGAGCGGAAGGATGGAGGGTTGTAGATAAATATATAGGGCA
GGGAAGAGTCGTGAAAGAAATACGAGGATGGTATCGAAGAGGGGAAGAGA
GAAGGAGGGAAGAAATATGAGCGTTGTCTCGTTCTTTTACGTGATAAAGT
TGTGTGAGTAGGGAAAAAGACGGGGTGGGTAAGCCAGACAAGTCAAGGGA
AGGGGGTGGGGGGATACAATCGATAAGAAAATGCACGAAGAAAAGATGAA
AGAATGGAAAACACCACCTGGGCAGAATATGCGACGAT
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Coding sequence (CDS) from alignment at chr13:745861..747598+

>NO13G02710.1 ID=NO13G02710.1|Name=NO13G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr13:745861..747598+ (Nannochloropsis oceanica)
ATGACTTCCCGCCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTTCT
GTCTAGCGAGGCCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCAGG
CTAGCAAATCACCGCAGCTGGCTCTCATCGGGCACCAATTGAGCCTGATA
CCTTCCTCCATTTCCACGAGCAAGAAACGCTTTGCCCTAAGCAGCCCACT
CAAGGCAGCGACACTCAATGTTGACAGTGATCCGACTACCTCCTTGAAAA
ATGACGGCCTTAAGATCGAACTGCGTCAATTCTCCAAGTTCCTGCATTCC
ACTGCCTGGTTTTCATGGTGGGCCCAGGTTATCTGCAATACCGTCGCAGG
CGTCATCCTCTTCTTCACCAACTCCTTCGTCTCCCCGTCAGCCGGCAGTG
GTTCCCCGCTCGCTGCCCGCAATATCTTCAGCAACGGCTATATCTTCGCA
GCTGGCGGCTTATGCCTGGGTGCTATTTCAATATTTTGGACCTGGGGCTT
CACGGGCGTCGCGAAACGCATCCGTCGTGCAGTTCTTGAGCCCCCGACCT
CTCTCGCGATGATTCGCCGCGTCGTCCGCACCGCCATTTTTATCAATCTT
CTCGGCTTGCTCACCGCCTTGATTGGAGCAGAGCAGTTTGTGGGTAATCT
CATGGCACGTGTTTTGTCCCAGCAGGGTTTCTCGCCATTGGTCATCAATC
CTGGAGCGGGTGGCGGTGCGATTGCATCACCGACCGTGCAGCCGGTGGAC
ATATTCGTGATTCAAGCGAATACTAATATCTTGTTGTCGCATTTCATTTC
TTTGGTGAGTTCATTGTTGTTATTGCTGAGGTATTCTAAGATAAGTCGGG
CAGCGGGGGAGTCGAACTAG
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Synonyms
Publications