NO13G02470.1, NO13G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02470.1
Unique NameNO13G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr13:681013..682560 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:681013..682560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G02470.1 vs.
Match: XP_004990606.1 (oxidoreductase [Salpingoeca rosetta]; EGD77262.1 oxidoreductase [Salpingoeca rosetta])

HSP 1 Score: 198.4 bits (503), Expect = 3.800e-47
Identity = 124/309 (40.13%), Postives = 170/309 (55.02%), Query Frame = 0 
Query:   46 VVGALAVWMGLLLN---PSYPVPPKGIVLVTGTSTGIGREVVNMLAKSGYHVFAGVRRQESATEWNTISKWRQHQIHPVLLDVTLKEHIDNVVTEIKRYSGEHDDMKFAGLVNNAGIGCHRPVEHHDMDDVRNMFETNLLGPLYLTQKLLPLIRRDKGRIIFTSSLAGRITQPKEGIYSATKSGVEAVGDALRQELLPYECSVSLVEPGFVMTPILSKILDSEEVAN--STTAAQTYPWYYTKKYFDIFNFGINHAGDVSRVARQVLA-ALTDIRPKTRYATTNVLMVPTWLAIQAKQLIPDRLMDKIL 349
            ++G LAV + LL       +PV   G +L+TGTSTGIGR     LAK GY V+A VR+Q      +++ K   + + P+++DVT  + I + V  IK+  G H   K  GLVNNAGI    P+E HD+D +R+MFE N+ G + +TQ  LP+IR +KGRI+   SLAG I  P    YSATK G+E + DALR+E+ P+  SVS+VEP +V T I SK           S     TY W++    F+          D   V  + +  ALT   P+TRY   N   +P  +A     L+PDRL D +L
Sbjct:    9 LMGILAVLLYLLFVFPVKYFPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADV---DSLKKEGVNTLIPIVMDVTKPDQIASAVDTIKK--GGH---KLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRENKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGEAAATRWVSREMQDTYAWFFAD--FEEKRLKGEALADGPEVTTKAITHALTSRTPETRYIVANTYGIPAKIAALINWLLPDRLGDIVL 307
The following BLAST results are available for this feature:
BLAST of NO13G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004990606.13.800e-4740.13oxidoreductase [Salpingoeca rosetta]; EGD77262.1 o... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02470NO13G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02470.1NO13G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02470.1.cds1NO13G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02470.1.cds2NO13G02470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02470.1 ID=NO13G02470.1|Name=NO13G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
ACAGGAATATTCTAATCCTTTCCAGCGCACGTAAAAGATAATGCCGCCAC
GCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGCAGGTGGCATC
TCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACCCGCTGATGCG
CAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTGGCAGTCTGGA
TGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAAGGGTATCGTT
CTTGTCACAGGCACATCCACAGGCATCGGGCGGGAAGTGGTGAATATGCT
GGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGCCAGGAGAGTG
CCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCAAATCCACCCC
GTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATGTAGTGACGGA
GATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTTGCGGGCTTGG
TCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACACCACGACATG
GACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTCCGCTGTATCT
GACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGGCGTATCATTT
TCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGAAGGGATTTAT
TCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCCTGCGACAGGA
ACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCGGGTTTCGTCA
TGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGTGGCGAATTCC
ACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGAAGTACTTCGA
CATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCTCGGGTAGCTC
GCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAACACGCTACGCG
ACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTCAAGCTAAGCA
GTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAATAAAGAGGCA
AAAGCGAGCGCGCAGCGACGGAGGAAAGGAGAATGGGAACGAAAATTACC
CACCGGAAGATTTTAAAAAACGATAGAAAGCAAGGCTTCATTTTGCATCA
TTGCTTCTCCACCAAAAATTACTTCACCAAGAAAAAATGGATGCGAGAGC
GATCAAAACAATACAGCAACGGCCTGATAAGAGAAAAAAGAAAGAATACA
AGACAACAAGGCAACGAAAACATAAAAGAAACCCCCTAAAAA
back to top

protein sequence of NO13G02470.1

>NO13G02470.1-protein ID=NO13G02470.1-protein|Name=NO13G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPPRRIPPRRASEGSIAGGISQTGQVASRAWQNPLMRNTFIGIATVVGAL
AVWMGLLLNPSYPVPPKGIVLVTGTSTGIGREVVNMLAKSGYHVFAGVRR
QESATEWNTISKWRQHQIHPVLLDVTLKEHIDNVVTEIKRYSGEHDDMKF
AGLVNNAGIGCHRPVEHHDMDDVRNMFETNLLGPLYLTQKLLPLIRRDKG
RIIFTSSLAGRITQPKEGIYSATKSGVEAVGDALRQELLPYECSVSLVEP
GFVMTPILSKILDSEEVANSTTAAQTYPWYYTKKYFDIFNFGINHAGDVS
RVARQVLAALTDIRPKTRYATTNVLMVPTWLAIQAKQLIPDRLMDKILTQ
*
back to top

mRNA from alignment at chr13:681013..682560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02470.1 ID=NO13G02470.1|Name=NO13G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr13:681013..682560- (Nannochloropsis oceanica)
ACAGGAATATTCTAATCCTTTCCAGCGCACGTAAAAGATAATGCCGCCAC
GCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGCAGGTGGCATC
TCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACCCGCTGATGCG
CAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTGGCAGTCTGGA
TGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAAGGGTATCGTT
CTTGTCACAGGTCAGCGAGGGCTGGGAGGGTTAGGCAGAGAAGTTAGGAA
AAAATCAATGGATTTGTCCTGGCGTAGCTAGGGCTCTCGTTGGCATCCAG
ATTCAACCATACGAAGCAGACTGTCCGGGTTGCATGCATGGTGTCACTTT
CACGATGCATTGTCAAGAGGGATCTCAACCCGAATCTTCCGATTTTTTTT
CTTAATTCTCTTTCAGGCACATCCACAGGCATCGGGCGGGAAGTGGTGAA
TATGCTGGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGCCAGG
AGAGTGCCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCAAATC
CACCCCGTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATGTAGT
GACGGAGATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTTGCGG
GCTTGGTCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACACCAC
GACATGGACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTCCGCT
GTATCTGACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGGCGTA
TCATTTTCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGAAGGG
ATTTATTCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCCTGCG
ACAGGAACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCGGGTT
TCGTCATGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGTGGCG
AATTCCACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGAAGTA
CTTCGACATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCTCGGG
TAGCTCGCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAACACGC
TACGCGACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTCAAGC
TAAGCAGTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAATAAA
GAGGCAAAAGCGAGCGCGCAGCGACGGAGGAAAGGAGAATGGGAACGAAA
ATTACCCACCGGAAGATTTTAAAAAACGATAGAAAGCAAGGCTTCATTTT
GCATCATTGCTTCTCCACCAAAAATTACTTCACCAAGAAAAAATGGATGC
GAGAGCGATCAAAACAATACAGCAACGGCCTGATAAGAGAAAAAAGAAAG
AATACAAGACAACAAGGCAACGAAAACATAAAAGAAACCCCCTAAAAA
back to top

Coding sequence (CDS) from alignment at chr13:681013..682560-

>NO13G02470.1 ID=NO13G02470.1|Name=NO13G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr13:681013..682560- (Nannochloropsis oceanica)
ATGCCGCCACGCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGC
AGGTGGCATCTCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACC
CGCTGATGCGCAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTG
GCAGTCTGGATGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAA
GGGTATCGTTCTTGTCACAGGCACATCCACAGGCATCGGGCGGGAAGTGG
TGAATATGCTGGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGC
CAGGAGAGTGCCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCA
AATCCACCCCGTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATG
TAGTGACGGAGATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTT
GCGGGCTTGGTCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACA
CCACGACATGGACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTC
CGCTGTATCTGACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGG
CGTATCATTTTCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGA
AGGGATTTATTCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCC
TGCGACAGGAACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCG
GGTTTCGTCATGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGT
GGCGAATTCCACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGA
AGTACTTCGACATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCT
CGGGTAGCTCGCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAAC
ACGCTACGCGACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTC
AAGCTAAGCAGTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAA
TAA
back to top
Synonyms
Publications