NO13G01900.1, NO13G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01900.1
Unique NameNO13G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1536
Alignment locationchr13:550329..551864 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:550329..551864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01900.1 vs.
Match: CBN78754.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.7 bits (335), Expect = 1.700e-27
Identity = 134/444 (30.18%), Postives = 219/444 (49.32%), Query Frame = 0 
Query:   17 AVALAPVEAQRALACLHDLAQKVALLGSMPTSSSLAAKAQILPDSFNDNMHPYARHHQDEDELSKFVRDEFHRHLTEQHCLEARHRDLIRQWHDLMANDYGNNYEKDDNTNPKSPSPLLDTLQTEMTEIGQALAHNSGILLRQLKERPRFSGFGVKMDRERKEFACLLDITIQELRQTGTFVALKTAVEEARQAQDLLAQVVYQEQSTTWRASQLELALQDAIITHQDHVAMQQAAIAALKVEMDRLQYKHEVTLKYTRRKAQAKASGVQHLYRQVEKDLERKQAHLLAQQALERQSFRDLMTYLMEEKLELQGQIAEWTTKADQDFGKLDAENEEVAVARESYSVELESLRTRRKVELAEEVARTMA-ALAKREEEKAQEALRVKNLEVAALKIGKAVRRYTLQVREQRNNPSAKATDKKEKKGKGKSERGTLPKAGGAEGKK 460
            A+AL P ++ R +A L + A+K+  LGS            I+PD             Q  DELSKFV DE  R + EQ  LEAR+  LI Q   L      + Y++               +Q E+ E+  AL  ++  L R LK+ P  SG  +K+ RER E   LL  + +++ +T +F AL + VE++R AQ   +++V +E+  T    +LE  L      H   V   +  +  LK  + +++ K  V +KY+R++  A+ S +  +Y Q E+ LE K   +   + +E       M +L +++ +LQ ++  W  +  ++ G+L+   +++   R    ++LE L+ R+++E  E+ AR  A ALA  EE+   E  R +N   AA +I + ++ Y L+   Q  N S     KK KKGKG ++       GG +GKK
Sbjct:   22 ALALGPEQSHRIIAVLEEAAEKLGFLGS------------IMPDVL-----------QHRDELSKFVGDEISRIIQEQRQLEARYEKLIAQRSTLKGLANKSRYKE---------------IQAEIQEVSLALRESTKNLCRNLKDNPNISGNLLKIQRERTELIDLLTDSCRQIGETRSFQALVSVVEDSRLAQSQQSELVRREKEATQTVKKLEADLFAERADHSRQVTENKTTMVDLKQTLLKVKSKTSVDVKYSRKEHSARVSSLLRVYEQYERQLEGKVKEMERLKEVEAAVNVQTMEFLEKKRNQLQDEVDAWEERYVEEVGELERICDDLTNERNEMLIKLEGLKRRKQIETEEKQAREDAKALAVLEEQARTELERRQN--QAATQIQRVMKEYVLR---QIANKS-----KKGKKGKGGAK-----GKGGKKGKK 412
The following BLAST results are available for this feature:
BLAST of NO13G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78754.11.700e-2730.18conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01900NO13G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01900.1NO13G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01900.1.cds1NO13G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01900.1 ID=NO13G01900.1|Name=NO13G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
ATGATTACAACAAATTTGGATGCCTCAAGCGGAGGTATGTCTTCTCCCGC
TGTGGCGTTGGCGCCTGTCGAGGCGCAAAGGGCGCTGGCCTGCCTCCACG
ATTTAGCCCAAAAAGTGGCCTTGTTGGGGTCCATGCCCACATCATCGAGC
CTGGCAGCCAAGGCTCAAATACTCCCTGACAGTTTCAATGACAATATGCA
TCCCTACGCGCGCCACCATCAGGACGAGGATGAGCTCTCCAAATTTGTGA
GGGACGAATTCCATCGGCACCTAACCGAGCAACATTGTCTCGAAGCCCGC
CACCGAGACCTCATTCGCCAATGGCACGACCTCATGGCAAATGACTATGG
AAACAATTATGAGAAAGATGACAATACGAACCCCAAGAGCCCATCTCCAC
TCCTTGACACATTGCAAACGGAAATGACCGAGATTGGCCAGGCACTTGCG
CACAACTCCGGCATCCTATTGCGGCAGCTCAAGGAACGCCCGCGCTTCAG
TGGCTTTGGTGTGAAAATGGACCGGGAACGCAAAGAATTTGCTTGCCTTC
TTGACATTACCATACAAGAATTAAGACAAACGGGCACATTTGTCGCCCTG
AAGACGGCTGTGGAGGAGGCACGACAGGCGCAGGACCTTCTTGCCCAAGT
GGTATACCAGGAGCAAAGCACGACATGGAGGGCGAGTCAGCTCGAGCTAG
CCTTGCAAGATGCCATCATCACCCACCAAGATCATGTGGCGATGCAGCAG
GCCGCTATTGCTGCTTTGAAAGTGGAGATGGATAGATTACAATACAAACA
CGAGGTCACCCTGAAATACACCCGACGGAAAGCCCAAGCGAAGGCGAGCG
GGGTGCAACACCTTTATCGCCAGGTAGAAAAAGATCTCGAACGCAAGCAG
GCCCATCTTCTAGCTCAACAGGCACTGGAGAGGCAGAGCTTTCGGGACTT
GATGACATATCTGATGGAGGAAAAACTGGAGCTTCAGGGCCAAATTGCTG
AGTGGACCACCAAGGCGGACCAGGACTTTGGGAAGCTCGACGCCGAGAAC
GAGGAGGTTGCTGTTGCGCGTGAATCGTATTCAGTAGAACTGGAATCTTT
GAGGACTCGTCGAAAGGTTGAACTGGCCGAGGAAGTGGCGCGGACAATGG
CGGCGTTGGCAAAGCGGGAGGAGGAGAAGGCGCAGGAGGCACTACGGGTA
AAGAATCTGGAAGTGGCTGCCTTGAAGATTGGCAAGGCGGTGAGGCGGTA
CACTCTGCAAGTGAGAGAGCAGCGGAATAATCCGTCAGCGAAAGCGACGG
ACAAGAAGGAGAAGAAAGGAAAGGGGAAAAGTGAGAGGGGTACGTTGCCT
AAGGCTGGAGGAGCAGAAGGCAAGAAGGCACCTGCAGTTGCGTCGAACGA
GAAGCCCGGAGCAAAGTCTGCCTCTTCCAAGCCGGCCACTAGTGCAAGAG
AAGCAGCAAGTAAAGCGCAAGTAGCTACAGTGGCGGCAACGACGGCAGCA
GGAGGAGCAGTGGCGAAGAATAATCAGGGGTTTTGA
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protein sequence of NO13G01900.1

>NO13G01900.1-protein ID=NO13G01900.1-protein|Name=NO13G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MITTNLDASSGGMSSPAVALAPVEAQRALACLHDLAQKVALLGSMPTSSS
LAAKAQILPDSFNDNMHPYARHHQDEDELSKFVRDEFHRHLTEQHCLEAR
HRDLIRQWHDLMANDYGNNYEKDDNTNPKSPSPLLDTLQTEMTEIGQALA
HNSGILLRQLKERPRFSGFGVKMDRERKEFACLLDITIQELRQTGTFVAL
KTAVEEARQAQDLLAQVVYQEQSTTWRASQLELALQDAIITHQDHVAMQQ
AAIAALKVEMDRLQYKHEVTLKYTRRKAQAKASGVQHLYRQVEKDLERKQ
AHLLAQQALERQSFRDLMTYLMEEKLELQGQIAEWTTKADQDFGKLDAEN
EEVAVARESYSVELESLRTRRKVELAEEVARTMAALAKREEEKAQEALRV
KNLEVAALKIGKAVRRYTLQVREQRNNPSAKATDKKEKKGKGKSERGTLP
KAGGAEGKKAPAVASNEKPGAKSASSKPATSAREAASKAQVATVAATTAA
GGAVAKNNQGF*
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mRNA from alignment at chr13:550329..551864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01900.1 ID=NO13G01900.1|Name=NO13G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at chr13:550329..551864- (Nannochloropsis oceanica)
ATGATTACAACAAATTTGGATGCCTCAAGCGGAGGTATGTCTTCTCCCGC
TGTGGCGTTGGCGCCTGTCGAGGCGCAAAGGGCGCTGGCCTGCCTCCACG
ATTTAGCCCAAAAAGTGGCCTTGTTGGGGTCCATGCCCACATCATCGAGC
CTGGCAGCCAAGGCTCAAATACTCCCTGACAGTTTCAATGACAATATGCA
TCCCTACGCGCGCCACCATCAGGACGAGGATGAGCTCTCCAAATTTGTGA
GGGACGAATTCCATCGGCACCTAACCGAGCAACATTGTCTCGAAGCCCGC
CACCGAGACCTCATTCGCCAATGGCACGACCTCATGGCAAATGACTATGG
AAACAATTATGAGAAAGATGACAATACGAACCCCAAGAGCCCATCTCCAC
TCCTTGACACATTGCAAACGGAAATGACCGAGATTGGCCAGGCACTTGCG
CACAACTCCGGCATCCTATTGCGGCAGCTCAAGGAACGCCCGCGCTTCAG
TGGCTTTGGTGTGAAAATGGACCGGGAACGCAAAGAATTTGCTTGCCTTC
TTGACATTACCATACAAGAATTAAGACAAACGGGCACATTTGTCGCCCTG
AAGACGGCTGTGGAGGAGGCACGACAGGCGCAGGACCTTCTTGCCCAAGT
GGTATACCAGGAGCAAAGCACGACATGGAGGGCGAGTCAGCTCGAGCTAG
CCTTGCAAGATGCCATCATCACCCACCAAGATCATGTGGCGATGCAGCAG
GCCGCTATTGCTGCTTTGAAAGTGGAGATGGATAGATTACAATACAAACA
CGAGGTCACCCTGAAATACACCCGACGGAAAGCCCAAGCGAAGGCGAGCG
GGGTGCAACACCTTTATCGCCAGGTAGAAAAAGATCTCGAACGCAAGCAG
GCCCATCTTCTAGCTCAACAGGCACTGGAGAGGCAGAGCTTTCGGGACTT
GATGACATATCTGATGGAGGAAAAACTGGAGCTTCAGGGCCAAATTGCTG
AGTGGACCACCAAGGCGGACCAGGACTTTGGGAAGCTCGACGCCGAGAAC
GAGGAGGTTGCTGTTGCGCGTGAATCGTATTCAGTAGAACTGGAATCTTT
GAGGACTCGTCGAAAGGTTGAACTGGCCGAGGAAGTGGCGCGGACAATGG
CGGCGTTGGCAAAGCGGGAGGAGGAGAAGGCGCAGGAGGCACTACGGGTA
AAGAATCTGGAAGTGGCTGCCTTGAAGATTGGCAAGGCGGTGAGGCGGTA
CACTCTGCAAGTGAGAGAGCAGCGGAATAATCCGTCAGCGAAAGCGACGG
ACAAGAAGGAGAAGAAAGGAAAGGGGAAAAGTGAGAGGGGTACGTTGCCT
AAGGCTGGAGGAGCAGAAGGCAAGAAGGCACCTGCAGTTGCGTCGAACGA
GAAGCCCGGAGCAAAGTCTGCCTCTTCCAAGCCGGCCACTAGTGCAAGAG
AAGCAGCAAGTAAAGCGCAAGTAGCTACAGTGGCGGCAACGACGGCAGCA
GGAGGAGCAGTGGCGAAGAATAATCAGGGGTTTTGA
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Coding sequence (CDS) from alignment at chr13:550329..551864-

>NO13G01900.1 ID=NO13G01900.1|Name=NO13G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr13:550329..551864- (Nannochloropsis oceanica)
ATGATTACAACAAATTTGGATGCCTCAAGCGGAGGTATGTCTTCTCCCGC
TGTGGCGTTGGCGCCTGTCGAGGCGCAAAGGGCGCTGGCCTGCCTCCACG
ATTTAGCCCAAAAAGTGGCCTTGTTGGGGTCCATGCCCACATCATCGAGC
CTGGCAGCCAAGGCTCAAATACTCCCTGACAGTTTCAATGACAATATGCA
TCCCTACGCGCGCCACCATCAGGACGAGGATGAGCTCTCCAAATTTGTGA
GGGACGAATTCCATCGGCACCTAACCGAGCAACATTGTCTCGAAGCCCGC
CACCGAGACCTCATTCGCCAATGGCACGACCTCATGGCAAATGACTATGG
AAACAATTATGAGAAAGATGACAATACGAACCCCAAGAGCCCATCTCCAC
TCCTTGACACATTGCAAACGGAAATGACCGAGATTGGCCAGGCACTTGCG
CACAACTCCGGCATCCTATTGCGGCAGCTCAAGGAACGCCCGCGCTTCAG
TGGCTTTGGTGTGAAAATGGACCGGGAACGCAAAGAATTTGCTTGCCTTC
TTGACATTACCATACAAGAATTAAGACAAACGGGCACATTTGTCGCCCTG
AAGACGGCTGTGGAGGAGGCACGACAGGCGCAGGACCTTCTTGCCCAAGT
GGTATACCAGGAGCAAAGCACGACATGGAGGGCGAGTCAGCTCGAGCTAG
CCTTGCAAGATGCCATCATCACCCACCAAGATCATGTGGCGATGCAGCAG
GCCGCTATTGCTGCTTTGAAAGTGGAGATGGATAGATTACAATACAAACA
CGAGGTCACCCTGAAATACACCCGACGGAAAGCCCAAGCGAAGGCGAGCG
GGGTGCAACACCTTTATCGCCAGGTAGAAAAAGATCTCGAACGCAAGCAG
GCCCATCTTCTAGCTCAACAGGCACTGGAGAGGCAGAGCTTTCGGGACTT
GATGACATATCTGATGGAGGAAAAACTGGAGCTTCAGGGCCAAATTGCTG
AGTGGACCACCAAGGCGGACCAGGACTTTGGGAAGCTCGACGCCGAGAAC
GAGGAGGTTGCTGTTGCGCGTGAATCGTATTCAGTAGAACTGGAATCTTT
GAGGACTCGTCGAAAGGTTGAACTGGCCGAGGAAGTGGCGCGGACAATGG
CGGCGTTGGCAAAGCGGGAGGAGGAGAAGGCGCAGGAGGCACTACGGGTA
AAGAATCTGGAAGTGGCTGCCTTGAAGATTGGCAAGGCGGTGAGGCGGTA
CACTCTGCAAGTGAGAGAGCAGCGGAATAATCCGTCAGCGAAAGCGACGG
ACAAGAAGGAGAAGAAAGGAAAGGGGAAAAGTGAGAGGGGTACGTTGCCT
AAGGCTGGAGGAGCAGAAGGCAAGAAGGCACCTGCAGTTGCGTCGAACGA
GAAGCCCGGAGCAAAGTCTGCCTCTTCCAAGCCGGCCACTAGTGCAAGAG
AAGCAGCAAGTAAAGCGCAAGTAGCTACAGTGGCGGCAACGACGGCAGCA
GGAGGAGCAGTGGCGAAGAATAATCAGGGGTTTTGA
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Synonyms
Publications