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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:515982..518724 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01760.1 vs.
Match: EWM21843.1 (Thioredoxin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 798.9 bits (2062), Expect = 8.300e-228 Identity = 375/457 (82.06%), Postives = 422/457 (92.34%), Query Frame = 0
Query: 1 MATQRSGAKGMDLYRRVPADLTETTSLGGLFSIVAGVFMAILCVVEIISFMSHTTETMVVLDQSHDQMIRINFNITMLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRPSTKLRS 458
M+++R A+GMDLYRRVPADLTET++LGGLFSIVAGVFM L +VE+ISFMSH TETMVVLD SHDQ+I+INFN+TMLDLPCR+AVVDVLDVLGTNRMN++KNIEKWNLDE GRRR+FQGRNREER ILHD+HH LEVLLQNGEHA+PL ADSFDEY+++NEFTFVSFYAPWC+WCQRLAPTWEAFAEHVE IP+KVAK+DCVTH QLC+DQKVHAFPTLR+FNRA PLPPDYNTDRT+ AL S+VTR+L VEEK+K+WPERD+EYVEHPGCMLSGHLLVNRVPGNFHIEARS HNLNA TNLSHVVNHLSFGPLY +VL+RLE+FSSEFYVSN+LDGR FVL+E HKAHHHY+KVVGTLYEVP RWG+ DM TYQMLPETS+M+Y +D+VPEAKFSYE+SPMAVIVK+TGRRWYEF TSL GILGGTFTVVGLLDSTLHRLL+PS+ L+S
Sbjct: 1 MSSKRPSARGMDLYRRVPADLTETSTLGGLFSIVAGVFMVALFIVELISFMSHRTETMVVLDHSHDQLIQINFNVTMLDLPCRYAVVDVLDVLGTNRMNVSKNIEKWNLDEAGRRRYFQGRNREERSILHDEHHGALEVLLQNGEHAVPLAADSFDEYLESNEFTFVSFYAPWCIWCQRLAPTWEAFAEHVEEAQIPVKVAKIDCVTHAQLCRDQKVHAFPTLRMFNRARPLPPDYNTDRTLVALTSFVTRKLAVEEKKKSWPERDQEYVEHPGCMLSGHLLVNRVPGNFHIEARSAVHNLNAAMTNLSHVVNHLSFGPLYDSQVLSRLERFSSEFYVSNALDGRDFVLEEPHKAHHHYLKVVGTLYEVPMRWGRADMLTYQMLPETSLMTYGLDEVPEAKFSYEVSPMAVIVKKTGRRWYEFVTSLCGILGGTFTVVGLLDSTLHRLLKPSSNLQS 457
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01760.1 ID=NO13G01760.1|Name=NO13G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT GGGCTCTTCTCCATCGTGGCGGGGGTATTCATGGCCATTCTTTGTGTTGT GGAGATTATCAGCTTCATGTCGCACACTACCGAGACCATGGTGGTCCTTG ATCAAAGCCACGACCAAATGATTCGGATAAATTTCAATATCACCATGCTC GATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTTGGGTAC CAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTGATGAGG AAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGCGAAATC CTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAATGGGGA GCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGCAGGCAA ATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGGTGCCAG CGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGCCGAAAG CATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACACAGTTGT GTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTCAACAGA GCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGCGGCGCT GGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGAAAAATT GGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATGCTCTCG GGCCACTTGCTCGTGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAG AAGCAAGGCCCATAACCTCAACGCTGTCTCGACAAACTTGTCACACGTCG TCAACCACCTCTCTTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGA TTAGAAAAATTTTCGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACG GATGTTTGTCCTGGACGAGTACCACAAGGCACATCACCACTATGTTAAGG TGGTCGGGACATTGTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATG TTCACCTATCAGATGCTGCCGGAGACGTCTGTCATGTCCTACGCCGTGGA CGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCCATGGCCGTGA TTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCACCTCTCTTTTT GGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGGACTCGACGTT GCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAGGGAGGGACAG AAGATGTGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGTGCAAGAGATA AAGACAGTTTAGGACAGATGAGCTACGCAACAGCAGCAGTAGCAACACGC AATTAAAAAACCAAAACAGCAGCGACAACGAAAAAGCACCAATTCGTCAA TGGAAATGTACGGGAAAACAAGTCGAATGCGCG back to topprotein sequence of NO13G01760.1 >NO13G01760.1-protein ID=NO13G01760.1-protein|Name=NO13G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp MATQRSGAKGMDLYRRVPADLTETTSLGGLFSIVAGVFMAILCVVEIISF MSHTTETMVVLDQSHDQMIRINFNITMLDLPCRFAVVDVLDVLGTNRMNI TKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPL TADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKV AKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVT RRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHN LNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLD EYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEA KFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLR PSTKLRS* back to topmRNA from alignment at chr13:515982..518724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01760.1 ID=NO13G01760.1|Name=NO13G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica) ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG
CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA
CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC
GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG
ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT
GGGCTCTTCTCCATCGTGGCGGGGTAAGTGCGGGGGCAGAGTAGATGGGG
CTGAAGTGTGGAGCACCAACCGCGGTCGTAGTGCTCTCACGCTGGAAATT
GGTTTCAGAGACTCAATCTCATTCTCATTTAATAGGGTATTCATGGCCAT
TCTTTGTGTTGTGGAGATTATCAGCTTCATGTCGCACACTACCGAGACCA
TGGTGGTCCTTGATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCC
CTCCTTCCTTTCCTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGT
CACGACAGAGCATGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTC
CCTTTTGCGTGTCCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCT
CCCTCCCTCCTTCCGTCCCTGCATAGATTCGGATAAATTTCAATATCACC
ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT
GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG
ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC
GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA
TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC
AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG
TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC
CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC
AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC
AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC
GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA
AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG
GTACGGTGAGGGAGGGATTGGGGTAGGGAGGGAAGGAGGGCGGGTGGAGG
TTGCATATCCATTCGTTACCGCATTGCGCATCCATTTACCCGCAGAGGCT
TCACAGTGGAAAAGGCAGGTCGGTAGGATGTGTTTGCTACCGCATAAGGT
GTATCACCAATCATTTCGTAAAGACAAGACCATCTCATCCCTCCGTCCCG
TCCTCCCTCCCTTCCTCTTTGCCTCCCTCAGCTCTCGGGCCACTTGCTCG
TGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAAGGCCCAT
AACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACCACCTCTC
TTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAAAAATTTT
CGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTTTGTCCTG
GACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCGGGACATT
GTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACCTATCAGA
TGCTGCCGGAGGTAAGGAGGAAGGAAGGGAGGGAGGGAGGGCAAACAGAG
TGGAGAATCATATTTGACTAATGTTTTGACGTAACAAAAGGGGCCAAGCA
TTTCACACCAATGGATGTATTATCACCCTATCACCAAATGGCTGTGGATT
AAGAGTGGATCCCCAAGACGGCGTTTGTATGTAAATATGGAAATTCGAAT
ATATCGAGCCACAGCCCCGGAATGTTTTTCAAGCCGAACGGTGCTCTGGC
ACATTCTAGTTGTCCATATTTACACACAATTGCACTCTTGGGGATCGACA
CCTCATCTACAACTATTTGGTGATAGGGTGATAATACATCCACTACTTGA
CTCCTTTCATTACGTCCAAACATGAGTCAATGAGGGTGATGGCGATCGGC
TTTTTCTTTCGCGACGTAATTCTCGATAATTTATTCTTACATTCCTTCCA
CCCCCTTCCCCTTAAATCTCAAATAAATGCATAGACGTCTGTCATGTCCT
ACGCCGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCC
ATGGCCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCAC
CTCTCTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGG
ACTCGACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG
GGAGGGACAGAAGATGTGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGT
GCAAGAGATAAAGACAGTTTAGGACAGATGAGCTACGCAACAGCAGCAGT
AGCAACACGCAATTAAAAAACCAAAACAGCAGCGACAACGAAAAAGCACC
AATTCGTCAATGGAAATGTACGGGAAAACAAGTCGAATGCGCG back to topCoding sequence (CDS) from alignment at chr13:515982..518724+ >NO13G01760.1 ID=NO13G01760.1|Name=NO13G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica) ATGGCGACACAACGTTCCGGGGCCAAGGGCATGGATTTGTACCGGCGGGT GCCCGCTGACCTGACCGAGACGACCAGTCTGGGTGGGCTCTTCTCCATCG TGGCGGGGGTATTCATGGCCATTCTTTGTGTTGTGGAGATTATCAGCTTC ATGTCGCACACTACCGAGACCATGGTGGTCCTTGATCAAAGCCACGACCA AATGATTCGGATAAATTTCAATATCACCATGCTCGATCTTCCCTGTCGCT TCGCCGTCGTGGATGTACTCGACGTCTTGGGTACCAACCGCATGAACATC ACCAAGAACATTGAAAAATGGAACCTTGATGAGGAAGGGCGGCGTCGTTT TTTTCAAGGCCGCAATCGGGAAGAGCGCGAAATCCTCCACGATGACCACC ACGCCGAATTGGAAGTCCTGTTGCAAAATGGGGAGCATGCTATCCCGCTT ACCGCCGACTCCTTCGACGAATACATGCAGGCAAATGAGTTTACATTCGT CTCCTTTTACGCTCCCTGGTGCGTGTGGTGCCAGCGCCTGGCGCCAACCT GGGAAGCCTTCGCGGAGCACGTGGAAGCCGAAAGCATTCCAATCAAGGTG GCCAAGGTCGATTGTGTGACGCACACACAGTTGTGTAAAGACCAGAAAGT GCATGCTTTCCCTACTCTTCGTTTATTCAACAGAGCGTCGCCGTTGCCAC CCGATTATAACACGGACCGGACCGTGGCGGCGCTGGCCAGCTATGTTACC CGGAGGTTGAACGTGGAGGAGAAGAGGAAAAATTGGCCGGAGCGCGATAG GGAGTATGTGGAGCACCCGGGTTGTATGCTCTCGGGCCACTTGCTCGTGA ACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAAGGCCCATAAC CTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACCACCTCTCTTT CGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAAAAATTTTCGT CGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTTTGTCCTGGAC GAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCGGGACATTGTA TGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACCTATCAGATGC TGCCGGAGACGTCTGTCATGTCCTACGCCGTGGACGATGTGCCCGAAGCG AAGTTTTCCTACGAAATCTCCCCCATGGCCGTGATTGTCAAGAGGACCGG CCGCCGATGGTATGAATTTGGCACCTCTCTTTTTGGTATCTTGGGAGGTA CTTTCACCGTTGTGGGCTTATTGGACTCGACGTTGCATCGGCTTCTCAGG CCATCGACGAAACTAAGGTCTTAG back to top
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