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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:499826..502404 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01690.1 vs.
Match: EWM21830.1 (cyclin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 459.5 bits (1181), Expect = 1.400e-125 Identity = 271/408 (66.42%), Postives = 302/408 (74.02%), Query Frame = 0
Query: 138 PAALSAFSRRSVASPTEAANRHLNTHLKSSSSSSPSPSSSSLSSSPNLPPGIVDIDDIQ--SQQPRSNHYSSSSSSSSSSSSSNNNNNNNNNNNNNSNCSFDTHQQVNLANIGAACGPNHHPAATDSTPQRLAAYSRDYFTYLREREREQQDRPMADYLARMQGGALTQDMRALLIDWLVTVCEECELMPSTLYHCVELVDRALSKVIVAKEQLQCLGCACLFVACKFEETTVPPLEEFTYMAAESFTKKQLTDLELRVVEALSFRVSTVTSYNFLPRFILAAGSRPRETALVHYLSELSLLHYEFLAFPPSIRAAAALYLARQTLAASTPDPIRRTAEERNVWTPTIAHYTGYKPVTDLRLQACVRLLRRAHAGAEWSTYEALKVKYTEPALLHVAEIACLEDEQLG 544
P AL + + +S S A H HL ++S P SSSLSSS LP GI+DID+ Q SQ PRS H +S SNN ++N A TD TPQRLA+YSRDYF YLREREREQQDRP+ DY++R+QGGALTQDMRALL+DWLVTVCEECELMPSTLYHCVEL+DRALSK+ V KEQLQC+GCACLF+ACKFEETTVP LEEFTYMAAESF+KKQLTDLELRVVEALSFR+STVT+YNFL RF LAAGS PRETALV+Y SELSLLHYEFL F PSIRAAAALYLARQTLA S D RR AEERN+WTPTIA YTGY P T L LQ CVRLLRRAHAG E+S YEALK+KY PALLHV +IAC+E++ LG
Sbjct: 16 PVALPSSASQSSDSEVNAGLEH---HLSDATSF---PFSSSLSSS-TLPVGIIDIDETQGSSQHPRS-HLLPHQVGKASHKQSNNVIVPRSSNL----------------------------ALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEEKDLG 387
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01690.1 ID=NO13G01690.1|Name=NO13G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp
TCCACTCCTTCTTCTTCTGCCTAGGAAAAGCGAGGGAAGTGTTGATCCTT
GTATTTTCTTTGTTGTGTGTGCGTTGTGGTGGATAAGGCATATTGGCACA
ATTTCCCAATCGATGCCAACCAACAACGCCGCTCGCTCACCCTCGTCAAC
CTCGACACGCCCTCGACGTCCCCCCAGATCGTCTGATCTGAGGCCTACCC
TCCCGCCTTATCCTCTTCGCTCCTTTCAGTGCAATATACAGCACACAAAA
TAGACTCTCGCACACCTCTCAACTTTATACTTCACACGCCTCCACTGACA
GGTCCGCCGCCGCCGCCGCAGCCCGGCCTCCTTCTGCAGCTCTTCGCCCA
GCCCCCTTCCCGCCAGCACCTCGTCCAGCCCGCCACCCTACCCTCACAGA
AGCAGAAATGGTTTATCAAAAGCGCAAAATTCTTGGCGATATTACGGTTG
CCGCCCTCTTGGGCACACACCCATACCGCAGCACCGGCGATGCCGATGGC
GACGCAAGCGGGAAACGCCAGCGCCTCCGCTCGAGCACTTCCAAGTCCAA
CTATACTGCCCAGATTCAAGACGCCCCCCGCCGCATGACCCGGCGTTCCT
CCGCGTTAGCCGCCACCTGCCCATCCACCTCTGCTGCCGATGCTTTTCAA
AAAGGACCCTCCCATGCCGACAAGGACGACAGCACCGCCTCCCGACGCCT
CTACTCCACTCAAGCCTTATCCTGTCCCCGCAGCATCAACACTAGTATCA
ACGACGCTGGCAATCTCCTGGCTTGCCATGAGGCCTTGGCTCTAAAAGAG
CCCGCCATGCATATCACGCCTGCTGCTCTGTCTGCTTTCTCCCGCAGATC
TGTTGCCTCCCCCACCGAGGCCGCCAACCGCCACCTCAACACTCACTTGA
AGTCTTCTTCTTCCTCCTCTCCCTCCCCTTCCTCTTCTTCCTTGTCCTCC
TCTCCTAACCTACCCCCCGGCATCGTCGACATTGACGACATTCAAAGCCA
GCAACCCCGCAGCAACCACTACAGTAGTAGCAGCAGCAGCAGCAGTAGCA
GCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAAC
AGCAACTGCTCGTTCGACACGCATCAGCAAGTCAATCTTGCGAACATTGG
CGCCGCCTGTGGCCCCAACCACCATCCGGCAGCAACTGACAGCACGCCCC
AACGGTTGGCAGCCTACAGCCGCGATTACTTCACCTACCTCAGAGAACGA
GAACGCGAGCAGCAAGACAGGCCCATGGCTGACTATTTGGCTCGGATGCA
AGGTGGGGCTTTGACTCAAGATATGCGCGCGTTGCTCATTGATTGGTTAG
TCACAGTGTGTGAGGAATGCGAGCTGATGCCTTCAACCCTATACCATTGC
GTGGAACTCGTCGATCGTGCCCTCAGCAAAGTAATCGTAGCCAAAGAACA
GCTGCAGTGCCTGGGGTGTGCCTGTCTATTCGTCGCCTGCAAATTCGAAG
AAACTACTGTCCCGCCCCTGGAAGAATTCACATATATGGCCGCTGAATCC
TTCACTAAAAAACAACTCACCGACCTCGAGCTCCGTGTAGTTGAAGCCCT
CTCCTTCCGCGTCTCCACTGTAACGAGCTACAATTTTCTCCCCCGCTTCA
TCCTTGCGGCTGGATCCCGTCCAAGAGAAACAGCCCTGGTGCACTACCTC
TCTGAATTGTCCCTCCTCCACTACGAATTCCTCGCCTTTCCTCCCTCCAT
CCGCGCTGCTGCTGCTCTTTACCTGGCTCGACAGACGTTGGCGGCATCTA
CTCCTGACCCCATCCGCCGGACGGCCGAGGAAAGGAATGTCTGGACTCCT
ACTATTGCTCATTACACAGGGTATAAACCTGTGACTGACTTGCGGTTGCA
GGCGTGTGTGAGGTTGTTGAGGAGAGCGCATGCGGGGGCGGAGTGGTCTA
CTTACGAGGCGTTGAAAGTCAAGTATACCGAACCGGCGCTATTGCACGTG
GCGGAGATTGCGTGTTTGGAGGACGAACAATTGGGTTTTCCTTCCTCTTC
GAATTAGACACCATGGAGGGAATTAGAGGAAGAAGAAAGAGTAGATGGAG
GAGATATGTAACGACAGCTCGATTAGAAGAGCAATGACCAAAGTAAAGGT
AGCTTTCAGACGAAGAAAAGGAGAGGCGCATATGCCATGTTTGCCCTATT
TTGTGCGTGTGATGATTAGATGAACTGAATGTGAATGAGATATAATTTGA
AGTCTTCCAAAAAGAAGGGTACTGAAATGTGTGCAAGCTGACCCAACATA
GGCACTTCTTCCTCTTCTTCCTCCTCCCCCGTCCAGCGACTGTCATCTTG
CTTGCCTTGGCCGTCTACAAGGAGGCCGACCAAAGCAAACGCATGTTGCT
GGGTTTTGAGTGAGTATGAACAGTGGGAAAATACCAGAAGGTGCCCATCC
CCATAAAAGCAAACTAGACATAGCGATATCCTCA back to topprotein sequence of NO13G01690.1 >NO13G01690.1-protein ID=NO13G01690.1-protein|Name=NO13G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MVYQKRKILGDITVAALLGTHPYRSTGDADGDASGKRQRLRSSTSKSNYT
AQIQDAPRRMTRRSSALAATCPSTSAADAFQKGPSHADKDDSTASRRLYS
TQALSCPRSINTSINDAGNLLACHEALALKEPAMHITPAALSAFSRRSVA
SPTEAANRHLNTHLKSSSSSSPSPSSSSLSSSPNLPPGIVDIDDIQSQQP
RSNHYSSSSSSSSSSSSSNNNNNNNNNNNNNSNCSFDTHQQVNLANIGAA
CGPNHHPAATDSTPQRLAAYSRDYFTYLREREREQQDRPMADYLARMQGG
ALTQDMRALLIDWLVTVCEECELMPSTLYHCVELVDRALSKVIVAKEQLQ
CLGCACLFVACKFEETTVPPLEEFTYMAAESFTKKQLTDLELRVVEALSF
RVSTVTSYNFLPRFILAAGSRPRETALVHYLSELSLLHYEFLAFPPSIRA
AAALYLARQTLAASTPDPIRRTAEERNVWTPTIAHYTGYKPVTDLRLQAC
VRLLRRAHAGAEWSTYEALKVKYTEPALLHVAEIACLEDEQLGFPSSSN* back to topmRNA from alignment at chr13:499826..502404- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01690.1 ID=NO13G01690.1|Name=NO13G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at chr13:499826..502404- (Nannochloropsis oceanica)
TCCACTCCTTCTTCTTCTGCCTAGGAAAAGCGAGGGAAGTGTTGATCCTT
GTATTTTCTTTGTTGTGTGTGCGTTGTGGTGGATAAGGCATATTGGCACA
ATTTCCCAATCGATGCCAACCAACAACGCCGCTCGCTCACCCTCGTCAAC
CTCGACACGCCCTCGACGTCCCCCCAGATCGTCTGATCTGAGGCCTACCC
TCCCGCCTTATCCTCTTCGCTCCTTTCAGTGCAATATACAGCACACAAAA
TAGACTCTCGCACACCTCTCAACTTTATACTTCACACGCCTCCACTGACA
GGTCCGCCGCCGCCGCCGCAGCCCGGCCTCCTTCTGCAGCTCTTCGCCCA
GCCCCCTTCCCGCCAGCACCTCGTCCAGCCCGCCACCCTACCCTCACAGA
AGCAGAAATGGTTTATCAAAAGCGCAAAATTCTTGGCGATATTACGGTTG
CCGCCCTCTTGGGCACACACCCATACCGCAGCACCGGCGATGCCGATGGC
GACGCAAGCGGGAAACGCCAGGTCCGTCCTTTATATGTGTCGTGGCTTTT
CCCTCCAGCCCAACCTCCTGACCTTCGCTCTTCCCTTTCTCTCGTACACA
ACTCACCCGGCTACAGCGCCTCCGCTCGAGCACTTCCAAGTCCAACTATA
CTGCCCAGATTCAAGACGCCCCCCGCCGCATGACCCGGCGTTCCTCCGCG
TTAGCCGCCACCTGCCCATCCACCTCTGCTGCCGATGCTTTTCAAAAAGG
ACCCTCCCATGCCGACAAGGACGACAGCACCGCCTCCCGACGCCTCTACT
CCACTCAAGCCTTATCCTGTCCCCGCAGCATCAACACTAGTATCAACGAC
GCTGGCAATCTCCTGGCTTGCCATGAGGCCTTGGCTCTAAAAGAGCCCGC
CATGCATATCACGCCTGCTGCTCTGTCTGCTTTCTCCCGCAGATCTGTTG
CCTCCCCCACCGAGGCCGCCAACCGCCACCTCAACACTCACTTGAAGTCT
TCTTCTTCCTCCTCTCCCTCCCCTTCCTCTTCTTCCTTGTCCTCCTCTCC
TAACCTACCCCCCGGCATCGTCGACATTGACGACATTCAAAGCCAGCAAC
CCCGCAGCAACCACTACAGTAGTAGCAGCAGCAGCAGCAGTAGCAGCAGC
AGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAA
CTGCTCGTTCGACACGCATCAGCAAGTCAATCTTGCGAACATTGGCGCCG
CCTGTGGCCCCAACCACCATCCGGCAGCAACTGACAGCACGCCCCAACGG
TTGGCAGCCTACAGCCGCGATTACTTCACCTACCTCAGAGAACGAGAACG
CGAGCAGCAAGACAGGCCCATGGCTGACTATTTGGCTCGGATGCAAGGTG
GGGCTTTGACTCAAGATATGCGCGCGTTGCTCATTGATTGGTTAGTCACA
GTGTGTGAGGAATGCGAGCTGATGCCTTCAACCCTATACCATTGCGTGGA
ACTCGTCGATCGTGCCCTCAGCAAAGTAATCGTAGCCAAAGAACAGCTGC
AGTGCCTGGGGTGTGCCTGTCTATTCGTCGCCTGCAAATTCGAAGAAACT
ACTGTCCCGCCCCTGGAAGAATTCACATATATGGCCGCTGAATCCTTCAC
TAAAAAACAACTCACCGACCTCGAGCTCCGTGTAGTTGAAGCCCTCTCCT
TCCGCGTCTCCACTGTAACGAGCTACAATTTTCTCCCCCGCTTCATCCTT
GCGGCTGGATCCCGTCCAAGAGAAACAGCCCTGGTGCACTACCTCTCTGA
ATTGTCCCTCCTCCACTACGAATTCCTCGCCTTTCCTCCCTCCATCCGCG
CTGCTGCTGCTCTTTACCTGGCTCGACAGACGTTGGCGGCATCTACTCCT
GACCCCATCCGCCGGACGGCCGAGGAAAGGAATGTCTGGACTCCTACTAT
TGCTCATTACACAGGGTATAAACCTGTGACTGACTTGCGGTTGCAGGCGT
GTGTGAGGTTGTTGAGGAGAGCGCATGCGGGGGCGGAGTGGTCTACTTAC
GAGGCGTTGAAAGTCAAGTATACCGAACCGGCGCTATTGCACGTGGCGGA
GATTGCGTGTTTGGAGGACGAACAATTGGGTTTTCCTTCCTCTTCGAATT
AGACACCATGGAGGGAATTAGAGGAAGAAGAAAGAGTAGATGGAGGAGAT
ATGTAACGACAGCTCGATTAGAAGAGCAATGACCAAAGTAAAGGTAGCTT
TCAGACGAAGAAAAGGAGAGGCGCATATGCCATGTTTGCCCTATTTTGTG
CGTGTGATGATTAGATGAACTGAATGTGAATGAGATATAATTTGAAGTCT
TCCAAAAAGAAGGGTACTGAAATGTGTGCAAGCTGACCCAACATAGGCAC
TTCTTCCTCTTCTTCCTCCTCCCCCGTCCAGCGACTGTCATCTTGCTTGC
CTTGGCCGTCTACAAGGAGGCCGACCAAAGCAAACGCATGTTGCTGGGTT
TTGAGTGAGTATGAACAGTGGGAAAATACCAGAAGGTGCCCATCCCCATA
AAAGCAAACTAGACATAGCGATATCCTCA back to topCoding sequence (CDS) from alignment at chr13:499826..502404- >NO13G01690.1 ID=NO13G01690.1|Name=NO13G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr13:499826..502404- (Nannochloropsis oceanica)
ATGGTTTATCAAAAGCGCAAAATTCTTGGCGATATTACGGTTGCCGCCCT
CTTGGGCACACACCCATACCGCAGCACCGGCGATGCCGATGGCGACGCAA
GCGGGAAACGCCAGCGCCTCCGCTCGAGCACTTCCAAGTCCAACTATACT
GCCCAGATTCAAGACGCCCCCCGCCGCATGACCCGGCGTTCCTCCGCGTT
AGCCGCCACCTGCCCATCCACCTCTGCTGCCGATGCTTTTCAAAAAGGAC
CCTCCCATGCCGACAAGGACGACAGCACCGCCTCCCGACGCCTCTACTCC
ACTCAAGCCTTATCCTGTCCCCGCAGCATCAACACTAGTATCAACGACGC
TGGCAATCTCCTGGCTTGCCATGAGGCCTTGGCTCTAAAAGAGCCCGCCA
TGCATATCACGCCTGCTGCTCTGTCTGCTTTCTCCCGCAGATCTGTTGCC
TCCCCCACCGAGGCCGCCAACCGCCACCTCAACACTCACTTGAAGTCTTC
TTCTTCCTCCTCTCCCTCCCCTTCCTCTTCTTCCTTGTCCTCCTCTCCTA
ACCTACCCCCCGGCATCGTCGACATTGACGACATTCAAAGCCAGCAACCC
CGCAGCAACCACTACAGTAGTAGCAGCAGCAGCAGCAGTAGCAGCAGCAG
CAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACT
GCTCGTTCGACACGCATCAGCAAGTCAATCTTGCGAACATTGGCGCCGCC
TGTGGCCCCAACCACCATCCGGCAGCAACTGACAGCACGCCCCAACGGTT
GGCAGCCTACAGCCGCGATTACTTCACCTACCTCAGAGAACGAGAACGCG
AGCAGCAAGACAGGCCCATGGCTGACTATTTGGCTCGGATGCAAGGTGGG
GCTTTGACTCAAGATATGCGCGCGTTGCTCATTGATTGGTTAGTCACAGT
GTGTGAGGAATGCGAGCTGATGCCTTCAACCCTATACCATTGCGTGGAAC
TCGTCGATCGTGCCCTCAGCAAAGTAATCGTAGCCAAAGAACAGCTGCAG
TGCCTGGGGTGTGCCTGTCTATTCGTCGCCTGCAAATTCGAAGAAACTAC
TGTCCCGCCCCTGGAAGAATTCACATATATGGCCGCTGAATCCTTCACTA
AAAAACAACTCACCGACCTCGAGCTCCGTGTAGTTGAAGCCCTCTCCTTC
CGCGTCTCCACTGTAACGAGCTACAATTTTCTCCCCCGCTTCATCCTTGC
GGCTGGATCCCGTCCAAGAGAAACAGCCCTGGTGCACTACCTCTCTGAAT
TGTCCCTCCTCCACTACGAATTCCTCGCCTTTCCTCCCTCCATCCGCGCT
GCTGCTGCTCTTTACCTGGCTCGACAGACGTTGGCGGCATCTACTCCTGA
CCCCATCCGCCGGACGGCCGAGGAAAGGAATGTCTGGACTCCTACTATTG
CTCATTACACAGGGTATAAACCTGTGACTGACTTGCGGTTGCAGGCGTGT
GTGAGGTTGTTGAGGAGAGCGCATGCGGGGGCGGAGTGGTCTACTTACGA
GGCGTTGAAAGTCAAGTATACCGAACCGGCGCTATTGCACGTGGCGGAGA
TTGCGTGTTTGGAGGACGAACAATTGGGTTTTCCTTCCTCTTCGAATTAG back to top
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