NO13G01570.1, NO13G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01570.1
Unique NameNO13G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1350
Alignment locationchr13:465982..467518 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:465982..467518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01570.1 vs.
Match: EWM21834.1 (ribosomal protein l11 methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 553.9 bits (1426), Expect = 4.600e-154
Identity = 292/447 (65.32%), Postives = 337/447 (75.39%), Query Frame = 0 
Query:   13 LLAITSTHAFLLPHLHTSSC-LRLHHSKQPTRRLSLRS-----ISTPPLHGSSSADEEADVATLQANEGWVEPWAGTESSDLVRIVFDCYEKDKMVIDPWLLSELLLETGAYSSQIEDAAKDTKDETPIFGEHGEPACSEKIWNRSLVMADYGLEVDVGGVLALVKAAFELCDTYPLKYRLERIIDRDWQKEVQEGWKPILLGDRLVVKFTWHNEEDMAPFLLSEE--KKMKVMTLEGGAAFGSGEHPTTHMCCAWLQEWLEQHALA----GGREVSVCDYGAGSGILALAALMFGASTAVGVEIDPFAIQSAYRNAAMNGLETVFLLPVEKKLGGKKDGDTRAKFLVVRPAGNEKEEEEMEMEEVNIAPTDVMLANILKRPLIELSKQISGLTKL-GGKVVLAGLLVEQAESVMEAYRRYFPDIHQANSMGEWALLVGTRNNEPVV 447
            LL +T  H F  P+  T+   +R   ++  +  L L         +  L G S  ++EA  AT+QAN  W EPW G ES+DLVRI+FDCYEKD+M+IDPWLLSELLLETGAYSSQIEDAAKDT+DETPIFGEHGEPACSEKIWNRSLVMADYGL+VDVG VL+L+K AF+L  +YP++YRLERI+DRDWQKEVQE WKP+LLGDRL+VKFTWH EED+   L S    + +KV+ LEGGAAFGSGEHPTT MCCAWLQ  L   +      GG  +SVCDYGAGSGILA+AAL+FGA TA GVEID FAIQSAYRNA MNGL+  F+ PVE +  G + G     + +V+P G+  EE+    EEV IAPTDVMLANILKRPLIELSKQIS LTKL GGKV LAGLL EQAE VM AYR YFPDI  A+  GEW LLVGTRN+ PVV
Sbjct:   41 LLTMTCAHGFTRPYFRTTRIDIRRARNEPQSAPLPLSCGCVHLSRSKRLQGHSFKEDEAS-ATIQANNEWTEPWTGAESNDLVRIIFDCYEKDRMLIDPWLLSELLLETGAYSSQIEDAAKDTRDETPIFGEHGEPACSEKIWNRSLVMADYGLDVDVGSVLSLIKEAFQLGASYPVRYRLERIVDRDWQKEVQESWKPLLLGDRLLVKFTWHEEEDVKALLASRTAVEDVKVLALEGGAAFGSGEHPTTVMCCAWLQSHLAAESAKAGTDGGEGLSVCDYGAGSGILAMAALLFGAGTAFGVEIDVFAIQSAYRNAEMNGLQMAFVQPVETRTEGTEGGIACVTYQLVQPDGSVDEED----EEVQIAPTDVMLANILKRPLIELSKQISSLTKLEGGKVALAGLLEEQAEDVMAAYRPYFPDIAPADQEGEWVLLVGTRNDVPVV 482
The following BLAST results are available for this feature:
BLAST of NO13G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21834.14.600e-15465.32ribosomal protein l11 methyltransferase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01570NO13G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01570.1NO13G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01570.1.cds1NO13G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01570.1.cds2NO13G01570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01570.1 ID=NO13G01570.1|Name=NO13G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ATGCCTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCAC
GAGCACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTC
GACTACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATT
TCAACTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGT
TGCCACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCG
AGAGCAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAG
ATGGTCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGC
GTACAGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACAC
CGATTTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAAT
CGGAGCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGT
GCTGGCCCTAGTCAAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGA
AATACCGCCTTGAGCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAG
GAAGGATGGAAACCCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTAC
ATGGCACAATGAGGAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGA
AGATGAAGGTGATGACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAA
CACCCGACGACGCACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACA
GCACGCTCTAGCGGGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAG
GGAGTGGGATTTTGGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCG
GTAGGCGTGGAGATCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGC
AGCAATGAATGGATTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGT
TAGGAGGAAAAAAAGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGA
CCGGCTGGGAACGAGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAA
CATAGCTCCAACGGACGTGATGCTCGCCAATATACTGAAGAGGCCATTGA
TTGAACTATCGAAGCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTG
GTGTTGGCGGGGTTGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTA
TCGGCGTTATTTTCCCGATATACATCAAGCGAATAGCATGGGGGAGTGGG
CGTTATTAGTAGGGACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGA
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protein sequence of NO13G01570.1

>NO13G01570.1-protein ID=NO13G01570.1-protein|Name=NO13G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MPRSRKPALLLLLLAITSTHAFLLPHLHTSSCLRLHHSKQPTRRLSLRSI
STPPLHGSSSADEEADVATLQANEGWVEPWAGTESSDLVRIVFDCYEKDK
MVIDPWLLSELLLETGAYSSQIEDAAKDTKDETPIFGEHGEPACSEKIWN
RSLVMADYGLEVDVGGVLALVKAAFELCDTYPLKYRLERIIDRDWQKEVQ
EGWKPILLGDRLVVKFTWHNEEDMAPFLLSEEKKMKVMTLEGGAAFGSGE
HPTTHMCCAWLQEWLEQHALAGGREVSVCDYGAGSGILALAALMFGASTA
VGVEIDPFAIQSAYRNAAMNGLETVFLLPVEKKLGGKKDGDTRAKFLVVR
PAGNEKEEEEMEMEEVNIAPTDVMLANILKRPLIELSKQISGLTKLGGKV
VLAGLLVEQAESVMEAYRRYFPDIHQANSMGEWALLVGTRNNEPVVFEE*
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mRNA from alignment at chr13:465982..467518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01570.1 ID=NO13G01570.1|Name=NO13G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at chr13:465982..467518+ (Nannochloropsis oceanica)
ATGCCTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCAC
GAGCACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTC
GACTACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATT
TCAACTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGT
TGCCACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCG
AGAGCAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAG
ATGGTCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGC
GTACAGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACAC
CGATTTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAAT
CGGAGCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGT
GCTGGTGCGTAGCTTCCAGAAGCGAGGGAGAGGGAGGGCGACCTGGTTAC
ATTTTTGGTCTCTTCTTGCGTGCTTGATTGCTGTGTCGCATGTTTGCACT
TGTTCCCGAATTTTATTCTATCTCTTTTCTCCTGCTCCTACATTCGAGCG
TTTCTCCTCCTCCCTTCTCGTTCTTCATCACACAAAATTAGGCCCTAGTC
AAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGAAATACCGCCTTGA
GCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAGGAAGGATGGAAAC
CCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTACATGGCACAATGAG
GAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGAAGATGAAGGTGAT
GACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAACACCCGACGACGC
ACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACAGCACGCTCTAGCG
GGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAGGGAGTGGGATTTT
GGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCGGTAGGCGTGGAGA
TCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGCAGCAATGAATGGA
TTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGTTAGGAGGAAAAAA
AGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGACCGGCTGGGAACG
AGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAACATAGCTCCAACG
GACGTGATGCTCGCCAATATACTGAAGAGGCCATTGATTGAACTATCGAA
GCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTGGTGTTGGCGGGGT
TGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTATCGGCGTTATTTT
CCCGATATACATCAAGCGAATAGCATGGGGGAGTGGGCGTTATTAGTAGG
GACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGA
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Coding sequence (CDS) from alignment at chr13:465982..467518+

>NO13G01570.1 ID=NO13G01570.1|Name=NO13G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr13:465982..467518+ (Nannochloropsis oceanica)
ATGCCTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCAC
GAGCACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTC
GACTACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATT
TCAACTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGT
TGCCACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCG
AGAGCAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAG
ATGGTCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGC
GTACAGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACAC
CGATTTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAAT
CGGAGCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGT
GCTGGCCCTAGTCAAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGA
AATACCGCCTTGAGCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAG
GAAGGATGGAAACCCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTAC
ATGGCACAATGAGGAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGA
AGATGAAGGTGATGACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAA
CACCCGACGACGCACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACA
GCACGCTCTAGCGGGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAG
GGAGTGGGATTTTGGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCG
GTAGGCGTGGAGATCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGC
AGCAATGAATGGATTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGT
TAGGAGGAAAAAAAGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGA
CCGGCTGGGAACGAGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAA
CATAGCTCCAACGGACGTGATGCTCGCCAATATACTGAAGAGGCCATTGA
TTGAACTATCGAAGCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTG
GTGTTGGCGGGGTTGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTA
TCGGCGTTATTTTCCCGATATACATCAAGCGAATAGCATGGGGGAGTGGG
CGTTATTAGTAGGGACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGA
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Synonyms
Publications