NO13G01210.1, NO13G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01210.1
Unique NameNO13G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr13:369386..371059 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:369386..371059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01210.1 vs.
Match: EWM21801.1 (pyruvate dehydrogenase component x [Nannochloropsis gaditana])

HSP 1 Score: 667.2 bits (1720), Expect = 4.600e-188
Identity = 382/563 (67.85%), Postives = 441/563 (78.33%), Query Frame = 0 
Query:    1 MMRRGLLASSRHHALGRATNPAHATLKSGSGSRRGLFSILTKPLTAEVVGSISRSSSGSMGITGFHLSRPTSLQPTRRGFAAVPEFTTIMMPSLSPTMTHGTISEWTKKPGDICGAGDVLCEIETDKAVVSYDVQDEFVLAKILEDAKGREIKVGEPVAISVEDQAAYQAFVEADKAGEIEMPMLPFTPAPGTAPAPSAVASSSPSPP----PPPSSPSPTAHLGDFALSPAARHLIHSQHLTLSTDVRGTGKGGRLTKGDVIRAISNGQVTATPPSPPAPSAFSAKAAPAVAATAPVASAAPAATIAPAALPP--VHISEIHAMPGTFADSKNSNMRKIIARRLAESKATVPHVYETVDCEIDTVLTFRKRLQKEYEVSVSVNDVIIRSAALALRDVPEANAFWDGKQGTAVLNKGVDISVAVATPTGLITPIITMSDRRRLTEISATMKDLAGRARQGKLKPEEFQGGSFTISNLGMFGIDEFSAVINPPQAAIMAVGRGAKRVRAPEFVMGQDVGSLKPYSATVMTATLSFDRRVLDEALAAQFLQAFKSYMSRPELLLL 558
            MMR+ +++ +R  AL +A +       S S SRR L + + +PL        SR     M   GF+  R ++   +RRGFA +PE +TI+MP+LSPTMTHGTISEWTKKPGD+C AGDVLCEIETDKAVV++DVQDE VLAKILE+AKGREI+VG PVA+SVED+AAY+AFVEADKAG+I       TP+    P+P+A ++S P+P     PPPS P+PTAHLGDFALSPAARHL+HS+ LTLS +V GTGKGGRLTKGDVI+AI+NGQ  A        +AF+A   P                  P  L P  V I  I A PGTF+D+KNSNMRK+IARRLAESKATVPH YETVDCEID VL+FRK++Q+++EV+VSVND IIRSAALALRDVPEANAFWDG +GTAVL + VDISVAVATP GLITPII+ SDRRRL+EISATMKDLAGRARQGKLKPEEFQGGSFTISNLGMFGIDEFSAVINPPQAAIMAVGRGAKRVRAP ++  Q  G+LKPY+ATVMTATLSFDRRVLDEALAAQFLQAFKSYMSRPELLLL
Sbjct:    1 MMRQRVISFTRRFALKQAASCGTTPHASVSTSRRRL-AHMARPLFFLSCSDGSRP----MLNMGFYAGRKSACLMSRRGFADLPEVSTIVMPALSPTMTHGTISEWTKKPGDVCEAGDVLCEIETDKAVVAFDVQDECVLAKILEEAKGREIQVGMPVALSVEDKAAYEAFVEADKAGKIA------TPSTEALPSPTASSTSPPAPSLPASPPPSPPTPTAHLGDFALSPAARHLLHSRQLTLSAEVHGTGKGGRLTKGDVIQAIANGQAQA--------AAFAAVPPP------------------PPGLDPAQVGIPTIQAGPGTFSDTKNSNMRKVIARRLAESKATVPHAYETVDCEIDAVLSFRKQMQRDFEVNVSVNDFIIRSAALALRDVPEANAFWDGPKGTAVLKEDVDISVAVATPAGLITPIISGSDRRRLSEISATMKDLAGRARQGKLKPEEFQGGSFTISNLGMFGIDEFSAVINPPQAAIMAVGRGAKRVRAPPYLPDQHAGNLKPYTATVMTATLSFDRRVLDEALAAQFLQAFKSYMSRPELLLL 526
The following BLAST results are available for this feature:
BLAST of NO13G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21801.14.600e-18867.85pyruvate dehydrogenase component x [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01210NO13G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01210.1NO13G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01210.1.cds1NO13G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01210.1 ID=NO13G01210.1|Name=NO13G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGATGCGCCGGGGTCTTCTCGCCTCCTCCCGTCATCACGCGTTAGGCCG
GGCCACCAACCCTGCACATGCCACACTCAAAAGTGGCAGCGGCAGCAGGA
GAGGGCTTTTCAGCATCTTGACGAAGCCCTTGACGGCCGAGGTAGTCGGC
AGCATAAGCAGGAGCAGCAGTGGAAGTATGGGCATAACCGGCTTTCATCT
CTCCCGCCCGACCTCTCTCCAGCCCACCCGCCGTGGCTTTGCGGCCGTGC
CGGAGTTCACCACCATTATGATGCCCTCCTTGTCCCCCACCATGACCCAT
GGGACCATAAGTGAATGGACTAAGAAGCCCGGGGACATTTGCGGGGCGGG
GGATGTGCTGTGCGAGATCGAGACTGACAAGGCCGTGGTGTCTTACGATG
TCCAAGATGAATTTGTCCTTGCCAAAATTCTCGAAGACGCCAAGGGCCGC
GAAATCAAGGTCGGTGAACCCGTTGCTATCTCCGTGGAAGATCAAGCAGC
TTATCAAGCCTTCGTCGAGGCCGACAAAGCAGGGGAAATCGAAATGCCCA
TGCTCCCTTTTACTCCAGCACCGGGAACGGCACCAGCACCATCAGCTGTG
GCCTCCTCCTCTCCTTCCCCTCCTCCTCCTCCTTCGTCCCCATCACCTAC
TGCCCACCTGGGCGACTTCGCCCTTTCTCCCGCTGCCCGCCACCTCATCC
ACTCCCAACACCTCACCCTCTCAACCGATGTGCGCGGCACGGGAAAAGGC
GGTCGACTCACAAAAGGAGATGTGATTCGTGCCATTTCCAACGGACAAGT
AACTGCCACCCCTCCCTCTCCACCCGCGCCTTCGGCATTCTCCGCAAAAG
CAGCGCCCGCAGTGGCAGCGACAGCACCAGTAGCATCAGCAGCACCAGCA
GCAACAATAGCACCAGCAGCTCTCCCCCCTGTGCACATCTCTGAAATCCA
CGCGATGCCTGGTACCTTTGCCGACAGCAAAAACTCTAACATGCGCAAGA
TTATCGCGCGGCGCCTGGCCGAGAGCAAGGCTACTGTGCCCCATGTCTAT
GAGACGGTTGATTGCGAGATTGACACCGTACTGACCTTCCGCAAGCGCTT
GCAGAAAGAGTATGAAGTAAGTGTGTCTGTTAATGACGTGATTATCCGCT
CAGCTGCCTTGGCACTCCGGGACGTGCCCGAAGCTAATGCCTTCTGGGAC
GGGAAACAAGGAACGGCAGTGCTGAATAAAGGAGTGGATATCTCTGTGGC
GGTCGCGACCCCCACGGGGCTCATCACTCCGATCATCACCATGTCGGACC
GACGAAGACTGACGGAGATAAGTGCGACTATGAAGGACTTGGCGGGAAGG
GCTAGACAAGGGAAGCTTAAGCCGGAGGAGTTTCAGGGAGGGTCTTTCAC
GATTTCGAACTTAGGGATGTTTGGGATTGATGAGTTTTCGGCAGTGATTA
ACCCGCCACAGGCCGCCATTATGGCGGTGGGGCGGGGGGCGAAGAGGGTG
AGGGCGCCTGAGTTTGTGATGGGGCAGGATGTAGGGAGTTTGAAGCCGTA
TAGTGCGACGGTGATGACGGCTACCTTATCGTTTGATCGGAGGGTGTTGG
ATGAAGCGTTGGCAGCGCAATTTTTGCAGGCATTTAAGAGTTATATGTCT
AGGCCGGAATTGCTCTTGCTGTAG
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protein sequence of NO13G01210.1

>NO13G01210.1-protein ID=NO13G01210.1-protein|Name=NO13G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MMRRGLLASSRHHALGRATNPAHATLKSGSGSRRGLFSILTKPLTAEVVG
SISRSSSGSMGITGFHLSRPTSLQPTRRGFAAVPEFTTIMMPSLSPTMTH
GTISEWTKKPGDICGAGDVLCEIETDKAVVSYDVQDEFVLAKILEDAKGR
EIKVGEPVAISVEDQAAYQAFVEADKAGEIEMPMLPFTPAPGTAPAPSAV
ASSSPSPPPPPSSPSPTAHLGDFALSPAARHLIHSQHLTLSTDVRGTGKG
GRLTKGDVIRAISNGQVTATPPSPPAPSAFSAKAAPAVAATAPVASAAPA
ATIAPAALPPVHISEIHAMPGTFADSKNSNMRKIIARRLAESKATVPHVY
ETVDCEIDTVLTFRKRLQKEYEVSVSVNDVIIRSAALALRDVPEANAFWD
GKQGTAVLNKGVDISVAVATPTGLITPIITMSDRRRLTEISATMKDLAGR
ARQGKLKPEEFQGGSFTISNLGMFGIDEFSAVINPPQAAIMAVGRGAKRV
RAPEFVMGQDVGSLKPYSATVMTATLSFDRRVLDEALAAQFLQAFKSYMS
RPELLLL*
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mRNA from alignment at chr13:369386..371059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01210.1 ID=NO13G01210.1|Name=NO13G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at chr13:369386..371059+ (Nannochloropsis oceanica)
ATGATGCGCCGGGGTCTTCTCGCCTCCTCCCGTCATCACGCGTTAGGCCG
GGCCACCAACCCTGCACATGCCACACTCAAAAGTGGCAGCGGCAGCAGGA
GAGGGCTTTTCAGCATCTTGACGAAGCCCTTGACGGCCGAGGTAGTCGGC
AGCATAAGCAGGAGCAGCAGTGGAAGTATGGGCATAACCGGCTTTCATCT
CTCCCGCCCGACCTCTCTCCAGCCCACCCGCCGTGGCTTTGCGGCCGTGC
CGGAGTTCACCACCATTATGATGCCCTCCTTGTCCCCCACCATGACCCAT
GGGACCATAAGTGAATGGACTAAGAAGCCCGGGGACATTTGCGGGGCGGG
GGATGTGCTGTGCGAGATCGAGACTGACAAGGCCGTGGTGTCTTACGATG
TCCAAGATGAATTTGTCCTTGCCAAAATTCTCGAAGACGCCAAGGGCCGC
GAAATCAAGGTCGGTGAACCCGTTGCTATCTCCGTGGAAGATCAAGCAGC
TTATCAAGCCTTCGTCGAGGCCGACAAAGCAGGGGAAATCGAAATGCCCA
TGCTCCCTTTTACTCCAGCACCGGGAACGGCACCAGCACCATCAGCTGTG
GCCTCCTCCTCTCCTTCCCCTCCTCCTCCTCCTTCGTCCCCATCACCTAC
TGCCCACCTGGGCGACTTCGCCCTTTCTCCCGCTGCCCGCCACCTCATCC
ACTCCCAACACCTCACCCTCTCAACCGATGTGCGCGGCACGGGAAAAGGC
GGTCGACTCACAAAAGGAGATGTGATTCGTGCCATTTCCAACGGACAAGT
AACTGCCACCCCTCCCTCTCCACCCGCGCCTTCGGCATTCTCCGCAAAAG
CAGCGCCCGCAGTGGCAGCGACAGCACCAGTAGCATCAGCAGCACCAGCA
GCAACAATAGCACCAGCAGCTCTCCCCCCTGTGCACATCTCTGAAATCCA
CGCGATGCCTGGTACCTTTGCCGACAGCAAAAACTCTAACATGCGCAAGA
TTATCGCGCGGCGCCTGGCCGAGAGCAAGGCTACTGTGCCCCATGTCTAT
GAGACGGTTGATTGCGAGATTGACACCGTACTGACCTTCCGCAAGCGCTT
GCAGAAAGAGTATGAAGTAAGTGTGTCTGTTAATGACGTGATTATCCGCT
CAGCTGCCTTGGCACTCCGGGACGTGCCCGAAGCTAATGCCTTCTGGGAC
GGGAAACAAGGAACGGCAGTGCTGAATAAAGGAGTGGATATCTCTGTGGC
GGTCGCGACCCCCACGGGGCTCATCACTCCGATCATCACCATGTCGGACC
GACGAAGACTGACGGAGATAAGTGCGACTATGAAGGACTTGGCGGGAAGG
GCTAGACAAGGGAAGCTTAAGCCGGAGGAGTTTCAGGGAGGGTCTTTCAC
GATTTCGAACTTAGGGATGTTTGGGATTGATGAGTTTTCGGCAGTGATTA
ACCCGCCACAGGCCGCCATTATGGCGGTGGGGCGGGGGGCGAAGAGGGTG
AGGGCGCCTGAGTTTGTGATGGGGCAGGATGTAGGGAGTTTGAAGCCGTA
TAGTGCGACGGTGATGACGGCTACCTTATCGTTTGATCGGAGGGTGTTGG
ATGAAGCGTTGGCAGCGCAATTTTTGCAGGCATTTAAGAGTTATATGTCT
AGGCCGGAATTGCTCTTGCTGTAG
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Coding sequence (CDS) from alignment at chr13:369386..371059+

>NO13G01210.1 ID=NO13G01210.1|Name=NO13G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr13:369386..371059+ (Nannochloropsis oceanica)
ATGATGCGCCGGGGTCTTCTCGCCTCCTCCCGTCATCACGCGTTAGGCCG
GGCCACCAACCCTGCACATGCCACACTCAAAAGTGGCAGCGGCAGCAGGA
GAGGGCTTTTCAGCATCTTGACGAAGCCCTTGACGGCCGAGGTAGTCGGC
AGCATAAGCAGGAGCAGCAGTGGAAGTATGGGCATAACCGGCTTTCATCT
CTCCCGCCCGACCTCTCTCCAGCCCACCCGCCGTGGCTTTGCGGCCGTGC
CGGAGTTCACCACCATTATGATGCCCTCCTTGTCCCCCACCATGACCCAT
GGGACCATAAGTGAATGGACTAAGAAGCCCGGGGACATTTGCGGGGCGGG
GGATGTGCTGTGCGAGATCGAGACTGACAAGGCCGTGGTGTCTTACGATG
TCCAAGATGAATTTGTCCTTGCCAAAATTCTCGAAGACGCCAAGGGCCGC
GAAATCAAGGTCGGTGAACCCGTTGCTATCTCCGTGGAAGATCAAGCAGC
TTATCAAGCCTTCGTCGAGGCCGACAAAGCAGGGGAAATCGAAATGCCCA
TGCTCCCTTTTACTCCAGCACCGGGAACGGCACCAGCACCATCAGCTGTG
GCCTCCTCCTCTCCTTCCCCTCCTCCTCCTCCTTCGTCCCCATCACCTAC
TGCCCACCTGGGCGACTTCGCCCTTTCTCCCGCTGCCCGCCACCTCATCC
ACTCCCAACACCTCACCCTCTCAACCGATGTGCGCGGCACGGGAAAAGGC
GGTCGACTCACAAAAGGAGATGTGATTCGTGCCATTTCCAACGGACAAGT
AACTGCCACCCCTCCCTCTCCACCCGCGCCTTCGGCATTCTCCGCAAAAG
CAGCGCCCGCAGTGGCAGCGACAGCACCAGTAGCATCAGCAGCACCAGCA
GCAACAATAGCACCAGCAGCTCTCCCCCCTGTGCACATCTCTGAAATCCA
CGCGATGCCTGGTACCTTTGCCGACAGCAAAAACTCTAACATGCGCAAGA
TTATCGCGCGGCGCCTGGCCGAGAGCAAGGCTACTGTGCCCCATGTCTAT
GAGACGGTTGATTGCGAGATTGACACCGTACTGACCTTCCGCAAGCGCTT
GCAGAAAGAGTATGAAGTAAGTGTGTCTGTTAATGACGTGATTATCCGCT
CAGCTGCCTTGGCACTCCGGGACGTGCCCGAAGCTAATGCCTTCTGGGAC
GGGAAACAAGGAACGGCAGTGCTGAATAAAGGAGTGGATATCTCTGTGGC
GGTCGCGACCCCCACGGGGCTCATCACTCCGATCATCACCATGTCGGACC
GACGAAGACTGACGGAGATAAGTGCGACTATGAAGGACTTGGCGGGAAGG
GCTAGACAAGGGAAGCTTAAGCCGGAGGAGTTTCAGGGAGGGTCTTTCAC
GATTTCGAACTTAGGGATGTTTGGGATTGATGAGTTTTCGGCAGTGATTA
ACCCGCCACAGGCCGCCATTATGGCGGTGGGGCGGGGGGCGAAGAGGGTG
AGGGCGCCTGAGTTTGTGATGGGGCAGGATGTAGGGAGTTTGAAGCCGTA
TAGTGCGACGGTGATGACGGCTACCTTATCGTTTGATCGGAGGGTGTTGG
ATGAAGCGTTGGCAGCGCAATTTTTGCAGGCATTTAAGAGTTATATGTCT
AGGCCGGAATTGCTCTTGCTGTAG
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Synonyms
Publications