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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:35993..39502 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00110.2 vs.
Match: EWM22856.1 (cln3like protein [Nannochloropsis gaditana]) HSP 1 Score: 451.8 bits (1161), Expect = 2.700e-123 Identity = 255/392 (65.05%), Postives = 293/392 (74.74%), Query Frame = 0
Query: 79 WWGGRR-KEGETVARQIEKRHNLAAFWALGLLNNIVYVIMLAGAKEISAGGVGLVFLADIAPTFLVKLTAPYWFHYFAYSIRASICGVLMAASLITVATGETLAVQLIGVGFCSLQAGIGEASMLGLTAQYHGPSTITAWSSGTGFAGILGYGWVVFFHLLCGVSFSSTLLVALVLPLGWIATFFFGLGDPSSETYRGVMEDINNELSSAADDVNEEEEERD-GEGGREGGVPVSSMLGPLNGTASSALIRPGTASAVYALHPPST---EEVEEEEEE---WEEELPCRRRTEGGGRGAGRTGWERRRKGHPQTHAFTMRERWQLFLSLWPYTVPLITVYWAEYAMQSGTWSAIGFPVYSEKARKSFYFYANMCYQARVDAPNPFPPFVPPS 463
W GR ++G+ A +EKR NLAAFWALGLLNN+VYVIMLAGAKEI+AGGVGLVFLAD+APTFLVKL+APYWFH+ +YS+RAS+CG LMAASL+TVA G TLAVQL GVGFCSLQAGIGEASMLGLTAQYHGPSTITAWSSGTGFAGILGY WVVFFHLL +SF +TL+ AL+LP+ W+ TFF+ LGDP+SE Y+ V+ DIN+ELSSA D+ +EEE D GE G G+P GTA+SAL+ P S +Y+ PST E E EEEE E E R R GGR R + ++ HP TH FT+RERW LFLSLWPYTVPL+TVYWAEYAMQSG WSAIGFPV EKARK FY +ANM YQ V +PPS
Sbjct: 4 WLRGRMGRDGDKQA--MEKRQNLAAFWALGLLNNVVYVIMLAGAKEINAGGVGLVFLADVAPTFLVKLSAPYWFHHVSYSLRASLCGFLMAASLLTVALGRTLAVQLTGVGFCSLQAGIGEASMLGLTAQYHGPSTITAWSSGTGFAGILGYAWVVFFHLLLHMSFPATLIAALLLPIAWMFTFFYALGDPTSEAYQEVLADINDELSSAVDERDEEEYGVDEGEDGEGAGLPDFG-----EGTAASALLSPNAISPLYSY--PSTSLRNEAEGEEEEGRGGEREGEGRGRERKGGRVQKRARTRKGKRSHPHTHVFTIRERWSLFLSLWPYTVPLVTVYWAEYAMQSGAWSAIGFPVEEEKARKLFYAWANMSYQIGVFLSRSSGLLLPPS 386
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00110.2 ID=NO13G00110.2|Name=NO13G00110.2|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp ATGTGCGTCTCCCCTCAACCACACACATTGCACAGGCACCACCCCGAGCA CCAGCAGCCCCAGCACGAGATTGGCTCTGCAACCACCGTGGCGGCATCTC CTTCTCACGTTTTCCCGTTTGAGGTGGGAAGCGACGCCCTGCCCCCTCCT CCTGCACCTACAGCGGTGCTCTTGTCCCCCCCTCGGCCGAACGCCGGAGG AGGAGGCGAAGGGGGCGGAAGAGGAGCCAGTATGTGGTGGGGTGGAAGGA GGAAGGAGGGAGAGACAGTAGCACGGCAGATTGAGAAACGCCATAACCTG GCAGCTTTCTGGGCTTTGGGATTGTTGAACAATATTGTGTATGTGATCAT GCTCGCCGGCGCTAAAGAGATCAGCGCAGGCGGTGTGGGTCTAGTCTTTC TGGCTGACATTGCTCCCACCTTCCTCGTCAAGCTCACGGCGCCCTACTGG TTTCACTATTTTGCCTACTCTATCCGAGCCTCGATATGCGGGGTGCTGAT GGCGGCCTCCCTTATCACGGTCGCGACGGGGGAAACCCTGGCTGTCCAGC TTATTGGCGTGGGGTTCTGCTCCCTCCAAGCTGGCATCGGAGAAGCCTCA ATGCTGGGTCTGACGGCGCAGTATCACGGCCCTTCTACCATTACGGCCTG GTCGTCAGGCACGGGCTTCGCGGGCATCCTGGGCTACGGCTGGGTTGTTT TCTTCCACCTTCTGTGCGGCGTCTCCTTCTCCTCCACCCTCCTAGTCGCC CTCGTGCTCCCCCTCGGGTGGATCGCCACCTTCTTCTTCGGACTCGGTGA CCCCTCCTCCGAAACATACAGGGGGGTCATGGAAGACATCAACAACGAGC TTAGCTCGGCGGCCGATGATGTGAACGAGGAGGAAGAAGAGAGGGATGGG GAGGGAGGGAGGGAGGGGGGGGTGCCCGTGTCGTCGATGCTGGGGCCGTT GAACGGGACCGCCTCGTCTGCCCTCATCCGTCCCGGCACGGCTTCAGCCG TCTATGCCCTGCACCCGCCCTCAACGGAGGAGGTGGAGGAGGAGGAGGAA GAGTGGGAGGAAGAGCTGCCATGCAGGAGAAGGACCGAGGGAGGGGGTAG AGGGGCGGGGAGAACGGGATGGGAGAGGAGGCGGAAGGGTCATCCTCAGA CGCATGCATTTACGATGCGTGAACGGTGGCAACTCTTCTTGAGCCTCTGG CCTTACACGGTGCCATTGATCACTGTGTACTGGGCGGAATACGCGATGCA ATCCGGCACTTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCC GCAAGTCCTTCTATTTCTATGCCAATATGTGCTACCAGGCGCGTGTGGAT GCCCCGAACCCCTTCCCTCCTTTCGTTCCCCCCTCCTTTCGTGATTCCCT TCCTTCTCTCCTCATTTCTCTGACTGTTCTCATCACTCCTTTGCCTCCCA GGTCGGCGTCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCT TGACATTACTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCTTT TTCAGCCTGAACGCTGTCTGGCAGTTCTGGTGCGTGTGTGGGAGGGAAGG AGGAAGGGGGGAGAGGATATAGGCAAGAGATAGAAAGCGGAAGGCGTGAA GGTGGGGAGGCTTTACTCGCACCGATAGTCACTCAACCACACGACATGGT GTTTCGATATACTGGAGGTCAAACCACGGTCCGTATCGACGACCTCACGA TACAAATCCACTTAACTCCACTCTTCCTCCCCCGAAACAAAAAAGTCGCC TCTATTTACAATGCACTTTTTCAACACACTTGTCCATAGGTATGACTGGA CGCTGCTCATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATAT GTGGCCGGCTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGTA GGAGCGTGCTTCGAGGGGCCACTTAGACTGTTTTCCCTGCACCTTTTCCT TTACTCATACATGCACACGCACACTCTCTTTCTCAAGGGAACTGGCTTTA GTATCCTCGTCAATTGCGGACACCGTTGGAATTATGTTAAGCGACGTATT CGGGCTCGTGTTGCAGGTAAGGAATCGATAACCGTTTTGTCACTTCTTTT CTGATATGTGCCTCTGCTCATGTTTAATCTACAAATTCATGCATACTCAA CCTTATCTTCACGACACACCCGCATTCTCTCTCCCCTTCACCTCTCAGGG CTGTCTGTATCGCGCTAATGGCATTCCTGGCGCGACGTTTTCCTGTGGTG CGTGACGCAGGCCATTGTTTTGCATAGGATGTATATAATCAAGTAAGGAT TGAAAGTAATACGAATCAAAGCAATCCACAAGGAACAAAAGAATTGGTGT TAAAGATTGTGATGGAAC back to topprotein sequence of NO13G00110.2 >NO13G00110.2-protein ID=NO13G00110.2-protein|Name=NO13G00110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp MCVSPQPHTLHRHHPEHQQPQHEIGSATTVAASPSHVFPFEVGSDALPPP PAPTAVLLSPPRPNAGGGGEGGGRGASMWWGGRRKEGETVARQIEKRHNL AAFWALGLLNNIVYVIMLAGAKEISAGGVGLVFLADIAPTFLVKLTAPYW FHYFAYSIRASICGVLMAASLITVATGETLAVQLIGVGFCSLQAGIGEAS MLGLTAQYHGPSTITAWSSGTGFAGILGYGWVVFFHLLCGVSFSSTLLVA LVLPLGWIATFFFGLGDPSSETYRGVMEDINNELSSAADDVNEEEEERDG EGGREGGVPVSSMLGPLNGTASSALIRPGTASAVYALHPPSTEEVEEEEE EWEEELPCRRRTEGGGRGAGRTGWERRRKGHPQTHAFTMRERWQLFLSLW PYTVPLITVYWAEYAMQSGTWSAIGFPVYSEKARKSFYFYANMCYQARVD APNPFPPFVPPSFRDSLPSLLISLTVLITPLPPRSASSSPAHPACLFLPP * back to topmRNA from alignment at chr13:35993..39502- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00110.2 ID=NO13G00110.2|Name=NO13G00110.2|organism=Nannochloropsis oceanica|type=mRNA|length=3510bp|location=Sequence derived from alignment at chr13:35993..39502- (Nannochloropsis oceanica) ATGTGCGTCTCCCCTCAACCACACACATTGCACAGGCACCACCCCGAGCA
CCAGCAGCCCCAGCACGAGATTGGCTCTGCAACCACCGTGGCGGCATCTC
CTTCTCACGTTTTCCCGTTTGAGGTGGGAAGCGACGCCCTGCCCCCTCCT
CCTGCACCTACAGCGGTGCTCTTGTCCCCCCCTCGGCCGAACGCCGGAGG
AGGAGGCGAAGGGGGCGGAAGAGGAGCCAGTATGTGGTGGGGTGGAAGGA
GGAAGGAGGGAGAGACAGTAGCACGGCAGATTGAGAAACGCCATAACCTG
GCAGCTTTCTGGGCTTTGGGATTGTTGAACAATATTGTGTATGTGATCAT
GCTCGCCGGCGCTAAAGGTGAGGGTGGAAGGAAAGAGAAGTGGGAGAGAG
GAACTCGGCAGAAGAGAGCAAGTGCGAGGGAGCGGGACTCGGGATATGGG
GGGGAGAGTTTCAAGTCGTTGGTGTTGATGTACGGGTGTGGTCCTTTTGC
TCATGCCCCCGCTTCCGAACGATTACGCACTCAGAGATCAGCGCAGGCGG
TGTGGGTCTAGTCTTTCTGGCTGACATTGCTCCCACCTTCCTCGTCAAGC
TCACGGCGCCCTACTGGTACGTGTTAAGGGGACACGACTACGGAAAAAAA
AGAAAATATTTCATATTCACGTCTTCTTTCTCCTTCCCTCCCTGCCTCCC
TTCCTCCTAAGGTTTCACTATTTTGCCTACTCTATCCGAGCCTCGATATG
CGGGGTGCTGATGGCGGCCTCCCTTATCACGGTCGCGACGGGGGAAACCC
TGGCTGTCCAGCTTATTGGTAAGGGAGGGAGGGAGGGAGGAAGTGAGGAC
GGAAGGGCAGGGAGGGGTAGGGAGGGGTCAAAGAGAAGAGGACCTCTTAT
TGGTGACGACAAAAAGAAAACACGGAGGAGAAGATCTCTCGAAAGGCTCA
AGAGGCTCTGTTTCACTGTCTCTCACCATCCATCCCTCCCTCCCTTCCTC
CCTCCCTCCCTTCCTCCCTCCCCCCCTTCCTCCCTCCCTCTCCACAGGCG
TGGGGTTCTGCTCCCTCCAAGCTGGCATCGGAGAAGCCTCAATGCTGGGT
CTGACGGCGCAGTATCACGGCCCTTCTACCATTACGGCCTGGTCGTCAGG
CACGGGCTTCGCGGGCATCCTGGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGATAGAAGAATACTGTTGCTTCGAATGTGTCACCCTTTCTCAACTTCC
CATGCAATTCTCCATCCCTCCCTCCCTCCTTCCCTCTTTCCTCCTCGCCT
TCAGGCTACGGCTGGGTTGTTTTCTTCCACCTTCTGTGCGGCGTCTCCTT
CTCCTCCACCCTCCTAGTCGCCCTCGTGCTCCCCCTCGGGTGGATCGCCA
CCTTCTTCTTCGGACTCGGTGACCCCTCCTCCGAAACATACAGGGTAAGC
CCCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCCGCATGCAT
ACATACCCACCAATCTATTTTTTTCCTCCCTCACATGCATTCTCCCTCCT
TCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCGC
CCTAGGGGGTCATGGAAGACATCAACAACGAGCTTAGCTCGGCGGCCGAT
GATGTGAACGAGGAGGAAGAAGAGAGGGATGGGGAGGGAGGGAGGGAGGG
GGGGGTGCCCGTGTCGTCGATGCTGGGGCCGGTAAGAGAATGACGTTGGA
GGAAGGGAGGAGGGGAGGGAAGGGGGGGAAAGGGTGGAGGATAAATGAAG
GTACAAAGTCTTGGCTCTCCTCCTCTTTCACTCATTTCCCTCCCTCCCTT
CCTCCTACTTTCTCCCTTCCTCCCTCTCTCCCTCCCTCCCTCCCTCACAC
CCACGCAAAACAAGTTGAACGGGACCGCCTCGTCTGCCCTCATCCGTCCC
GGCACGGCTTCAGCCGTCTATGCCCTGCACCCGCCCTCAACGGAGGAGGT
GGAGGAGGAGGAGGAAGAGTGGGAGGAAGAGCTGCCATGCAGGAGAAGGA
CCGAGGGAGGGGGTAGAGGGGCGGGGAGAACGGGATGGGAGAGGAGGCGG
AAGGGTCATCCTCAGACGCATGCATTTACGATGCGTGAACGGTGGCAACT
CTTCTTGAGCCTCTGGCCTTACACGGTGCCATTGGTGAGGAGGCTGGAGG
GGGGGGTCGGAGGGAGGGAGGGTAGCTGGAGACGGGCAGGCCGAGCACTG
CAGTTGTAGCATGCTCCCATTCATTCAAGCATGTCCTCTCTCACTCCCTC
CCTCCCTTAGATCACTGTGTACTGGGCGGAATACGCGATGCAATCCGGCA
CTTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCCGCAAGTCC
TTCTATTTCTATGCCAATATGTGCTACCAGGCGCGTGTGGATGCCCCGAA
CCCCTTCCCTCCTTTCGTTCCCCCCTCCTTTCGTGATTCCCTTCCTTCTC
TCCTCATTTCTCTGACTGTTCTCATCACTCCTTTGCCTCCCAGGTCGGCG
TCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCTTGACATTA
CTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCTTTTTCAGCCT
GAACGCTGTCTGGCAGTTCTGGTGCGTGTGTGGGAGGGAAGGAGGAAGGG
GGGAGAGGATATAGGCAAGAGATAGAAAGCGGAAGGCGTGAAGGTGGGGA
GGCTTTACTCGCACCGATAGTCACTCAACCACACGACATGGTGTTTCGAT
ATACTGGAGGTCAAACCACGGTCCGTATCGACGACCTCACGATACAAATC
CACTTAACTCCACTCTTCCTCCCCCGAAACAAAAAAGTCGCCTCTATTTA
CAATGCACTTTTTCAACACACTTGTCCATAGGTATGACTGGACGCTGCTC
ATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATATGTGGCCGG
CTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGTAGGAGCGTG
CTTCGAGGGGCCACTTAGACTGTTTTCCCTGCACCTTTTCCTTTACTCAT
ACATGCACACGCACACTCTCTTTCTCAAGGGAACTGGCTTTAGTATCCTC
GTCAATTGCGGACACCGTTGGAATTATGTTAAGCGACGTATTCGGGCTCG
TGTTGCAGGTAAGGAATCGATAACCGTTTTGTCACTTCTTTTCTGATATG
TGCCTCTGCTCATGTTTAATCTACAAATTCATGCATACTCAACCTTATCT
TCACGACACACCCGCATTCTCTCTCCCCTTCACCTCTCAGGGCTGTCTGT
ATCGCGCTAATGGCATTCCTGGCGCGACGTTTTCCTGTGGTGCGTGACGC
AGGCCATTGTTTTGCATAGGATGTATATAATCAAGTAAGGATTGAAAGTA
ATACGAATCAAAGCAATCCACAAGGAACAAAAGAATTGGTGTTAAAGATT
GTGATGGAAC back to topCoding sequence (CDS) from alignment at chr13:35993..39502- >NO13G00110.2 ID=NO13G00110.2|Name=NO13G00110.2|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr13:35993..39502- (Nannochloropsis oceanica) ATGTGCGTCTCCCCTCAACCACACACATTGCACAGGCACCACCCCGAGCA CCAGCAGCCCCAGCACGAGATTGGCTCTGCAACCACCGTGGCGGCATCTC CTTCTCACGTTTTCCCGTTTGAGGTGGGAAGCGACGCCCTGCCCCCTCCT CCTGCACCTACAGCGGTGCTCTTGTCCCCCCCTCGGCCGAACGCCGGAGG AGGAGGCGAAGGGGGCGGAAGAGGAGCCAGTATGTGGTGGGGTGGAAGGA GGAAGGAGGGAGAGACAGTAGCACGGCAGATTGAGAAACGCCATAACCTG GCAGCTTTCTGGGCTTTGGGATTGTTGAACAATATTGTGTATGTGATCAT GCTCGCCGGCGCTAAAGAGATCAGCGCAGGCGGTGTGGGTCTAGTCTTTC TGGCTGACATTGCTCCCACCTTCCTCGTCAAGCTCACGGCGCCCTACTGG TTTCACTATTTTGCCTACTCTATCCGAGCCTCGATATGCGGGGTGCTGAT GGCGGCCTCCCTTATCACGGTCGCGACGGGGGAAACCCTGGCTGTCCAGC TTATTGGCGTGGGGTTCTGCTCCCTCCAAGCTGGCATCGGAGAAGCCTCA ATGCTGGGTCTGACGGCGCAGTATCACGGCCCTTCTACCATTACGGCCTG GTCGTCAGGCACGGGCTTCGCGGGCATCCTGGGCTACGGCTGGGTTGTTT TCTTCCACCTTCTGTGCGGCGTCTCCTTCTCCTCCACCCTCCTAGTCGCC CTCGTGCTCCCCCTCGGGTGGATCGCCACCTTCTTCTTCGGACTCGGTGA CCCCTCCTCCGAAACATACAGGGGGGTCATGGAAGACATCAACAACGAGC TTAGCTCGGCGGCCGATGATGTGAACGAGGAGGAAGAAGAGAGGGATGGG GAGGGAGGGAGGGAGGGGGGGGTGCCCGTGTCGTCGATGCTGGGGCCGTT GAACGGGACCGCCTCGTCTGCCCTCATCCGTCCCGGCACGGCTTCAGCCG TCTATGCCCTGCACCCGCCCTCAACGGAGGAGGTGGAGGAGGAGGAGGAA GAGTGGGAGGAAGAGCTGCCATGCAGGAGAAGGACCGAGGGAGGGGGTAG AGGGGCGGGGAGAACGGGATGGGAGAGGAGGCGGAAGGGTCATCCTCAGA CGCATGCATTTACGATGCGTGAACGGTGGCAACTCTTCTTGAGCCTCTGG CCTTACACGGTGCCATTGATCACTGTGTACTGGGCGGAATACGCGATGCA ATCCGGCACTTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCC GCAAGTCCTTCTATTTCTATGCCAATATGTGCTACCAGGCGCGTGTGGAT GCCCCGAACCCCTTCCCTCCTTTCGTTCCCCCCTCCTTTCGTGATTCCCT TCCTTCTCTCCTCATTTCTCTGACTGTTCTCATCACTCCTTTGCCTCCCA GGTCGGCGTCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCT TGA back to top
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