NO12G03730.1, NO12G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03730.1
Unique NameNO12G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1143
Alignment locationchr12:1034532..1035674 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1034532..1035674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03730.1 vs.
Match: XP_008869634.1 (hypothetical protein H310_06367 [Aphanomyces invadans]; ETW01786.1 hypothetical protein H310_06367 [Aphanomyces invadans])

HSP 1 Score: 83.6 bits (205), Expect = 1.500e-12
Identity = 61/179 (34.08%), Postives = 86/179 (48.04%), Query Frame = 0 
Query:   19 DEVDFGNLAGSIKLVQLSYGAFNERCKTHKGDEIEEDGDRTGLRVYTGAQAMVRFLYRFPW--LIKGQRVVELGCGVGAVGLLA-SRLGPTCVVLTDGSVETLELTQRNVATFQALPSLSPGFSPSSHGSTSAVASLPSLAVHKLQWDSHAAIVDLLHAQKVDKFDVVIGTDLMYYNVD 195
            + V+FG+ AG+    Q     +N  C T          D TGLRVY+GAQ M RFL       L++G+RV+ELGCG G +G +A +R   + +VLTDG    + L QRN+     + S+ P                 S A  +L W +        +   +  FDVV+G DLMYY  +
Sbjct:    6 ETVEFGD-AGTYSFFQYGSADYNHMCLTSNS----ASQDSTGLRVYSGAQVMARFLASADGLALLRGKRVIELGCGTGVIGCVAGARAILSDLVLTDGDERAVALAQRNLE--HVVHSIKPEL---------------STACRQLYWGAS-------YPPSLGAFDVVLGCDLMYYQTN 155
The following BLAST results are available for this feature:
BLAST of NO12G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008869634.11.500e-1234.08hypothetical protein H310_06367 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03730NO12G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03730.1NO12G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03730.1.cds1NO12G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03730.1 ID=NO12G03730.1|Name=NO12G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
ATGTCTTTGACGGCGCCCTTGCCACCCGCCCCAGTGGACGGCATCGGCAT
GGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGTCC
AACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCGAC
GAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGGGC
ACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGGAC
AGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAGCG
TCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAAAC
GCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTCGT
TGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCGCC
TCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCTGC
CATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGTGA
TAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGACG
GCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAAGG
GGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCCAT
ACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTGCG
TTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTCCT
CGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGCCG
CAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCGTC
TCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAGAGTACCCGGAACAACGCC
GGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGGGA
GGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTCGG
GTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAGGAAGA
CGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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protein sequence of NO12G03730.1

>NO12G03730.1-protein ID=NO12G03730.1-protein|Name=NO12G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MSLTAPLPPAPVDGIGMVDEVDFGNLAGSIKLVQLSYGAFNERCKTHKGD
EIEEDGDRTGLRVYTGAQAMVRFLYRFPWLIKGQRVVELGCGVGAVGLLA
SRLGPTCVVLTDGSVETLELTQRNVATFQALPSLSPGFSPSSHGSTSAVA
SLPSLAVHKLQWDSHAAIVDLLHAQKVDKFDVVIGTDLMYYNVDASVVLT
AATCLLDGRVKKREKEGGGGGGGRKVGEESEPPYKVNKDEREGCTNSGLA
FGKRRSESEGKGGIILLAHIFRGAHLPYTLLAAAESLGWALLEVPMEEVV
SEEGEGGGEGRVPGTTPEWWGSMCVLVGVRDGGREEGKEEMLARLPQGSR
VFVPYWKEGGEGGGEEDEELWSWQLPRAIN*
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mRNA from alignment at chr12:1034532..1035674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03730.1 ID=NO12G03730.1|Name=NO12G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at chr12:1034532..1035674+ (Nannochloropsis oceanica)
ATGTCTTTGACGGCGCCCTTGCCACCCGCCCCAGTGGACGGCATCGGCAT
GGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGTCC
AACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCGAC
GAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGGGC
ACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGGAC
AGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAGCG
TCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAAAC
GCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTCGT
TGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCGCC
TCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCTGC
CATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGTGA
TAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGACG
GCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAAGG
GGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCCAT
ACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTGCG
TTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTCCT
CGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGCCG
CAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCGTC
TCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAGAGTACCCGGAACAACGCC
GGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGGGA
GGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTCGG
GTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAGGAAGA
CGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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Coding sequence (CDS) from alignment at chr12:1034532..1035674+

>NO12G03730.1 ID=NO12G03730.1|Name=NO12G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr12:1034532..1035674+ (Nannochloropsis oceanica)
ATGTCTTTGACGGCGCCCTTGCCACCCGCCCCAGTGGACGGCATCGGCAT
GGTGGACGAGGTCGACTTTGGGAATTTGGCGGGCTCGATCAAACTTGTCC
AACTTTCTTACGGGGCATTCAATGAGAGGTGCAAGACACACAAAGGCGAC
GAGATAGAAGAAGACGGGGACCGTACCGGGCTGCGAGTCTACACTGGGGC
ACAAGCCATGGTCCGATTCCTGTACCGCTTCCCATGGCTGATAAAAGGAC
AGCGTGTGGTGGAACTGGGATGTGGGGTGGGCGCCGTGGGACTGTTAGCG
TCCCGATTGGGGCCGACGTGCGTAGTGCTGACGGACGGAAGTGTAGAAAC
GCTGGAACTGACGCAAAGGAACGTGGCTACCTTTCAAGCTTTACCCTCGT
TGTCCCCCGGGTTTTCTCCATCTTCGCACGGAAGTACTTCAGCTGTCGCC
TCCCTTCCCTCCCTTGCTGTGCACAAGCTGCAGTGGGACTCGCACGCTGC
CATCGTTGATTTGTTACACGCGCAAAAAGTGGACAAATTTGATGTTGTGA
TAGGCACGGACCTCATGTACTATAACGTAGATGCCTCGGTGGTATTGACG
GCCGCGACTTGCTTGCTGGATGGGAGGGTAAAAAAAAGAGAAAAAGAAGG
GGGAGGAGGTGGAGGAGGACGAAAGGTGGGAGAAGAGAGCGAACCCCCAT
ACAAAGTGAACAAAGATGAGCGAGAAGGGTGTACTAACAGCGGACTTGCG
TTCGGCAAGAGGAGAAGTGAGAGCGAGGGTAAGGGTGGCATCATCCTCCT
CGCGCATATATTCCGCGGAGCCCATCTTCCTTACACACTCTTGGCGGCCG
CAGAGTCCCTGGGATGGGCCTTGTTGGAGGTGCCGATGGAGGAGGTCGTC
TCGGAGGAAGGGGAGGGAGGGGGGGAGGGAAGAGTACCCGGAACAACGCC
GGAGTGGTGGGGGAGCATGTGTGTGTTGGTGGGGGTGAGGGATGGAGGGA
GGGAGGAAGGGAAGGAAGAAATGCTTGCGCGTTTGCCGCAGGGGAGTCGG
GTTTTTGTGCCATATTGGAAGGAGGGAGGGGAGGGAGGGGGGGAGGAAGA
CGAGGAGTTGTGGTCCTGGCAGTTACCACGTGCAATAAACTAG
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Synonyms
Publications