NO12G03530.1, NO12G03530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03530.1
Unique NameNO12G03530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1611
Alignment locationchr12:965814..967424 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:965814..967424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03530.1 vs.
Match: EWM25692.1 (s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 627.5 bits (1617), Expect = 3.900e-176
Identity = 358/541 (66.17%), Postives = 401/541 (74.12%), Query Frame = 0 
Query:   20 SPPLLLSAPSRGLVLLLLVLLLVASSWPASAASALTGVSQVSQVLGKSALGLAPWKIFDCNRASSSSTTSSTSKAATKATTSPVVVATAATARDYNLFYFPAFQHQRETEAKICRVEPSSTAAAGAMKLTTPTRSSSTTTPRRRDS---------SFSS-------------LPSQGRATTAAAAI--PPPSASPPSFRFPFFRPSLPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLLQTKGSAELSNLNFQILTRGAGAQFALSLPHGALAFAVLEATKTTLSSWFPVGFAGPAFDFVSSAVSTTLCSVISTPQMVLTDRIMAGYYPNLINGVSTVMKRDGVRGLYAGWFAALAQKIPSYGLTWVFFQQLKLARTRWLNHEATNAENFGMGAFAAAATVCVMIPLDTVKTRIVTQAANPMAGVHYKGVLDCFTRVLREEGLKTFYAPLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEKPLREGGREGGMAAGWEGMKAWARRRVPSLAPGSESPLSEPPLSEIFDEIEDAN 537
            SPP L   P R   LL L+  ++ASSW  +A +  +G+  VSQ L  + + LAP       RA+ S+  S  SK    +T+      TAA     +L    +F  QR    +   + P        + L +   S+ ++  RRR+          SFSS              P +GRA  AA      P SA P SF F  F P+LPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLLQTKG+ EL+NLN QILTRGAGAQFALSLPHGALAFAVLEATK+TLSSWFPV FAGPAFDFVSSAVSTT+CSVISTPQMVLTDRIMAGYYPNL++GV TV+K DGV+GLYAGWFAALAQKIPSYGLTWVFFQQLK+AR RW++HEATN ENFGMGA AAAATVCVMIPLDTVKTRIVTQAANP AGVHYKGV DCF+RVL+EEGLKTFYAPLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEK  RE  REGG   GW+ +KAW RR+VPSLAP S+SPLS+PPLSEIFDEIEDAN
Sbjct:   14 SPPPLPFKPRRCPHLLFLLAFILASSWITAAGATWSGIRHVSQRLSTNVVDLAP-------RAALSNGKSDASKVNRASTSRTPKTETAAIVPTESLTKLQSFFRQRNQRTE--GIVPGKATGVPRVTLASQATSTCSSPARRRNHPRPSLPPSPSFSSPLVALAATISAPFRPRKGRAAAAATGSRWSPSSAPPSSFAFSSFLPTLPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLLQTKGAGELANLNVQILTRGAGAQFALSLPHGALAFAVLEATKSTLSSWFPVNFAGPAFDFVSSAVSTTICSVISTPQMVLTDRIMAGYYPNLVHGVRTVLKTDGVQGLYAGWFAALAQKIPSYGLTWVFFQQLKIARNRWMDHEATNGENFGMGALAAAATVCVMIPLDTVKTRIVTQAANPAAGVHYKGVWDCFSRVLKEEGLKTFYAPLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEKGPREERREGG---GWDAVKAWGRRKVPSLAPESDSPLSQPPLSEIFDEIEDAN 542
The following BLAST results are available for this feature:
BLAST of NO12G03530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25692.13.900e-17666.17s-adenosylmethionine mitochondrial carrier protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03530NO12G03530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03530.1NO12G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03530.1.cds1NO12G03530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03530.1 ID=NO12G03530.1|Name=NO12G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp
ATGGCCGCTCCCACCGGTCACAGGCGACGGGTATCGTCGACCTGTTCCTC
AGGTATCTCGCCACCACTCCTCCTTTCCGCCCCAAGTCGCGGGCTTGTCC
TCCTCCTCCTTGTCCTCCTCCTAGTCGCCTCGTCATGGCCTGCATCGGCC
GCCTCGGCATTGACGGGCGTGTCACAAGTTTCACAAGTTCTGGGCAAGAG
CGCGTTGGGCCTAGCGCCGTGGAAGATATTTGATTGCAACAGGGCGAGCA
GCAGCAGTACCACTAGCAGCACCTCTAAGGCGGCGACGAAAGCCACAACA
TCGCCCGTGGTTGTGGCAACAGCAGCAACAGCAAGGGATTATAATTTATT
TTATTTTCCTGCATTTCAACATCAACGGGAGACGGAAGCCAAGATTTGCC
GAGTCGAACCGTCCTCGACAGCAGCTGCAGGAGCTATGAAGCTAACAACC
CCCACCCGCAGTAGCAGCACCACCACTCCGAGAAGAAGAGACTCCTCATT
CTCTTCCCTTCCTTCCCAAGGCCGCGCTACCACCGCCGCCGCAGCCATAC
CCCCTCCCTCCGCCTCCCCTCCTTCATTTCGCTTCCCCTTCTTCCGACCG
AGCCTTCCGGCCCTTCACGTCAACAAAACACTCACATTTTGGGGAAATAT
GCTTGCGGGCGCCGTGTCCCGCTCCTGCGCACAGACGGCAATGCACCCCG
CCAATGTTGTCAAGACCTTGCTGCAAACCAAGGGGTCAGCTGAGCTGAGT
AATTTGAATTTTCAAATTTTGACCCGGGGGGCCGGAGCCCAGTTCGCGCT
GTCGTTGCCTCATGGGGCTTTGGCTTTCGCAGTATTGGAGGCGACCAAGA
CAACTTTATCGAGCTGGTTTCCTGTGGGATTTGCCGGTCCGGCGTTTGAC
TTCGTCTCGTCGGCCGTGAGCACGACCTTGTGCTCGGTCATTAGCACGCC
ACAGATGGTGTTAACCGACAGGATTATGGCGGGGTATTACCCTAACCTCA
TCAACGGGGTGTCGACGGTGATGAAGAGGGACGGGGTGCGAGGCCTATAC
GCGGGGTGGTTCGCGGCCTTGGCGCAGAAAATCCCGAGCTATGGCTTAAC
TTGGGTGTTTTTCCAACAACTTAAATTGGCACGCACCCGGTGGTTGAATC
ATGAGGCGACCAATGCGGAGAATTTCGGGATGGGGGCATTCGCGGCAGCA
GCCACGGTGTGTGTTATGATTCCGCTGGACACGGTCAAGACAAGAATTGT
CACGCAGGCGGCGAACCCGATGGCGGGCGTGCACTACAAGGGTGTGTTGG
ATTGTTTTACACGGGTGCTGCGAGAGGAAGGCTTGAAGACGTTTTATGCC
CCCCTGGCCCCGCGCCTGGTCAGTGTGGTACCCATGATTGGTATCCAATT
TGGTGTCTACGAGTTTATGAAGCGGACCATTGCAGGCATGCCCGAGAAGC
CACTCAGGGAGGGCGGAAGGGAGGGAGGGATGGCGGCGGGGTGGGAGGGG
ATGAAGGCCTGGGCAAGAAGGAGGGTGCCAAGTTTGGCCCCGGGATCTGA
ATCCCCCTTGTCCGAGCCGCCTTTGAGTGAAATCTTTGATGAGATTGAGG
ATGCAAATTAG
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protein sequence of NO12G03530.1

>NO12G03530.1-protein ID=NO12G03530.1-protein|Name=NO12G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MAAPTGHRRRVSSTCSSGISPPLLLSAPSRGLVLLLLVLLLVASSWPASA
ASALTGVSQVSQVLGKSALGLAPWKIFDCNRASSSSTTSSTSKAATKATT
SPVVVATAATARDYNLFYFPAFQHQRETEAKICRVEPSSTAAAGAMKLTT
PTRSSSTTTPRRRDSSFSSLPSQGRATTAAAAIPPPSASPPSFRFPFFRP
SLPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLLQTKGSAELS
NLNFQILTRGAGAQFALSLPHGALAFAVLEATKTTLSSWFPVGFAGPAFD
FVSSAVSTTLCSVISTPQMVLTDRIMAGYYPNLINGVSTVMKRDGVRGLY
AGWFAALAQKIPSYGLTWVFFQQLKLARTRWLNHEATNAENFGMGAFAAA
ATVCVMIPLDTVKTRIVTQAANPMAGVHYKGVLDCFTRVLREEGLKTFYA
PLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEKPLREGGREGGMAAGWEG
MKAWARRRVPSLAPGSESPLSEPPLSEIFDEIEDAN*
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mRNA from alignment at chr12:965814..967424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03530.1 ID=NO12G03530.1|Name=NO12G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at chr12:965814..967424- (Nannochloropsis oceanica)
ATGGCCGCTCCCACCGGTCACAGGCGACGGGTATCGTCGACCTGTTCCTC
AGGTATCTCGCCACCACTCCTCCTTTCCGCCCCAAGTCGCGGGCTTGTCC
TCCTCCTCCTTGTCCTCCTCCTAGTCGCCTCGTCATGGCCTGCATCGGCC
GCCTCGGCATTGACGGGCGTGTCACAAGTTTCACAAGTTCTGGGCAAGAG
CGCGTTGGGCCTAGCGCCGTGGAAGATATTTGATTGCAACAGGGCGAGCA
GCAGCAGTACCACTAGCAGCACCTCTAAGGCGGCGACGAAAGCCACAACA
TCGCCCGTGGTTGTGGCAACAGCAGCAACAGCAAGGGATTATAATTTATT
TTATTTTCCTGCATTTCAACATCAACGGGAGACGGAAGCCAAGATTTGCC
GAGTCGAACCGTCCTCGACAGCAGCTGCAGGAGCTATGAAGCTAACAACC
CCCACCCGCAGTAGCAGCACCACCACTCCGAGAAGAAGAGACTCCTCATT
CTCTTCCCTTCCTTCCCAAGGCCGCGCTACCACCGCCGCCGCAGCCATAC
CCCCTCCCTCCGCCTCCCCTCCTTCATTTCGCTTCCCCTTCTTCCGACCG
AGCCTTCCGGCCCTTCACGTCAACAAAACACTCACATTTTGGGGAAATAT
GCTTGCGGGCGCCGTGTCCCGCTCCTGCGCACAGACGGCAATGCACCCCG
CCAATGTTGTCAAGACCTTGCTGCAAACCAAGGGGTCAGCTGAGCTGAGT
AATTTGAATTTTCAAATTTTGACCCGGGGGGCCGGAGCCCAGTTCGCGCT
GTCGTTGCCTCATGGGGCTTTGGCTTTCGCAGTATTGGAGGCGACCAAGA
CAACTTTATCGAGCTGGTTTCCTGTGGGATTTGCCGGTCCGGCGTTTGAC
TTCGTCTCGTCGGCCGTGAGCACGACCTTGTGCTCGGTCATTAGCACGCC
ACAGATGGTGTTAACCGACAGGATTATGGCGGGGTATTACCCTAACCTCA
TCAACGGGGTGTCGACGGTGATGAAGAGGGACGGGGTGCGAGGCCTATAC
GCGGGGTGGTTCGCGGCCTTGGCGCAGAAAATCCCGAGCTATGGCTTAAC
TTGGGTGTTTTTCCAACAACTTAAATTGGCACGCACCCGGTGGTTGAATC
ATGAGGCGACCAATGCGGAGAATTTCGGGATGGGGGCATTCGCGGCAGCA
GCCACGGTGTGTGTTATGATTCCGCTGGACACGGTCAAGACAAGAATTGT
CACGCAGGCGGCGAACCCGATGGCGGGCGTGCACTACAAGGGTGTGTTGG
ATTGTTTTACACGGGTGCTGCGAGAGGAAGGCTTGAAGACGTTTTATGCC
CCCCTGGCCCCGCGCCTGGTCAGTGTGGTACCCATGATTGGTATCCAATT
TGGTGTCTACGAGTTTATGAAGCGGACCATTGCAGGCATGCCCGAGAAGC
CACTCAGGGAGGGCGGAAGGGAGGGAGGGATGGCGGCGGGGTGGGAGGGG
ATGAAGGCCTGGGCAAGAAGGAGGGTGCCAAGTTTGGCCCCGGGATCTGA
ATCCCCCTTGTCCGAGCCGCCTTTGAGTGAAATCTTTGATGAGATTGAGG
ATGCAAATTAG
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Coding sequence (CDS) from alignment at chr12:965814..967424-

>NO12G03530.1 ID=NO12G03530.1|Name=NO12G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr12:965814..967424- (Nannochloropsis oceanica)
ATGGCCGCTCCCACCGGTCACAGGCGACGGGTATCGTCGACCTGTTCCTC
AGGTATCTCGCCACCACTCCTCCTTTCCGCCCCAAGTCGCGGGCTTGTCC
TCCTCCTCCTTGTCCTCCTCCTAGTCGCCTCGTCATGGCCTGCATCGGCC
GCCTCGGCATTGACGGGCGTGTCACAAGTTTCACAAGTTCTGGGCAAGAG
CGCGTTGGGCCTAGCGCCGTGGAAGATATTTGATTGCAACAGGGCGAGCA
GCAGCAGTACCACTAGCAGCACCTCTAAGGCGGCGACGAAAGCCACAACA
TCGCCCGTGGTTGTGGCAACAGCAGCAACAGCAAGGGATTATAATTTATT
TTATTTTCCTGCATTTCAACATCAACGGGAGACGGAAGCCAAGATTTGCC
GAGTCGAACCGTCCTCGACAGCAGCTGCAGGAGCTATGAAGCTAACAACC
CCCACCCGCAGTAGCAGCACCACCACTCCGAGAAGAAGAGACTCCTCATT
CTCTTCCCTTCCTTCCCAAGGCCGCGCTACCACCGCCGCCGCAGCCATAC
CCCCTCCCTCCGCCTCCCCTCCTTCATTTCGCTTCCCCTTCTTCCGACCG
AGCCTTCCGGCCCTTCACGTCAACAAAACACTCACATTTTGGGGAAATAT
GCTTGCGGGCGCCGTGTCCCGCTCCTGCGCACAGACGGCAATGCACCCCG
CCAATGTTGTCAAGACCTTGCTGCAAACCAAGGGGTCAGCTGAGCTGAGT
AATTTGAATTTTCAAATTTTGACCCGGGGGGCCGGAGCCCAGTTCGCGCT
GTCGTTGCCTCATGGGGCTTTGGCTTTCGCAGTATTGGAGGCGACCAAGA
CAACTTTATCGAGCTGGTTTCCTGTGGGATTTGCCGGTCCGGCGTTTGAC
TTCGTCTCGTCGGCCGTGAGCACGACCTTGTGCTCGGTCATTAGCACGCC
ACAGATGGTGTTAACCGACAGGATTATGGCGGGGTATTACCCTAACCTCA
TCAACGGGGTGTCGACGGTGATGAAGAGGGACGGGGTGCGAGGCCTATAC
GCGGGGTGGTTCGCGGCCTTGGCGCAGAAAATCCCGAGCTATGGCTTAAC
TTGGGTGTTTTTCCAACAACTTAAATTGGCACGCACCCGGTGGTTGAATC
ATGAGGCGACCAATGCGGAGAATTTCGGGATGGGGGCATTCGCGGCAGCA
GCCACGGTGTGTGTTATGATTCCGCTGGACACGGTCAAGACAAGAATTGT
CACGCAGGCGGCGAACCCGATGGCGGGCGTGCACTACAAGGGTGTGTTGG
ATTGTTTTACACGGGTGCTGCGAGAGGAAGGCTTGAAGACGTTTTATGCC
CCCCTGGCCCCGCGCCTGGTCAGTGTGGTACCCATGATTGGTATCCAATT
TGGTGTCTACGAGTTTATGAAGCGGACCATTGCAGGCATGCCCGAGAAGC
CACTCAGGGAGGGCGGAAGGGAGGGAGGGATGGCGGCGGGGTGGGAGGGG
ATGAAGGCCTGGGCAAGAAGGAGGGTGCCAAGTTTGGCCCCGGGATCTGA
ATCCCCCTTGTCCGAGCCGCCTTTGAGTGAAATCTTTGATGAGATTGAGG
ATGCAAATTAG
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Synonyms
Publications