NO12G03410.2, NO12G03410.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03410.2
Unique NameNO12G03410.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1759
Alignment locationchr12:935834..937957 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:935834..937957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03410.2 vs.
Match: XP_005853957.1 (hypothetical protein NGA_0432601 [Nannochloropsis gaditana CCMP526]; EKU22401.1 hypothetical protein NGA_0432601 [Nannochloropsis gaditana CCMP526]; EWM25697.1 Integral membrane protein TerC [Nannochloropsis gaditana])

HSP 1 Score: 350.9 bits (899), Expect = 4.900e-93
Identity = 197/287 (68.64%), Postives = 227/287 (79.09%), Query Frame = 0 
Query:   50 APLPKWTTRRGGLQNPFRK----HKQTAPPVESTTSN--------KAPAVTKIDPAVAYSTAVRRTMLAVGAACAFGFGLWYIEGKKSAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPFEYQSRALTWGIVGAVAMRGVMISVGVAAIQRFRWVVLMFAGILLGSAFKLLAETGHEGGEEDLSDNLMLRVAKKCVNAVDEYDGNKFFTKRNGKRFATPLFMCLICIELSDFVFAVDSIPAVLGVSKVCDAPSLLSYSRLCFGGFN-RSI--LISTNVTSLTFSLP 322
            A LP+W + RGGL  PFR+    H +TA  V+  +S         K+PA   ID   AY+TAVRRT+LAVGAA AFGFGLW++EG++ AMEFFAGYLIEESLSVDNIFVFIMLFEYFKVP EYQSRAL+WGI+GAVAMRG+MI VGVAAIQRFRWVVL+FAG+LLGSAFKLLAE GHEGGEEDLS+NL++  AKK V+AVDEYDG+ FFT+RNGKR+ATPLFMCLICIELSDFVFAVDSIPAVLGVSK      L+ YS   F     RS+  L++T V SL +  P
Sbjct:   49 AHLPQWVSSRGGLTLPFRQQQIAHAKTATVVKGPSSKGKAVGKRGKSPAA--IDAGEAYATAVRRTLLAVGAAFAFGFGLWFMEGRQPAMEFFAGYLIEESLSVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFRWVVLLFAGVLLGSAFKLLAEVGHEGGEEDLSNNLLVAWAKKLVHAVDEYDGDNFFTRRNGKRYATPLFMCLICIELSDFVFAVDSIPAVLGVSK----DPLIVYSSNIFAIMALRSLYTLVATAVNSLEYIKP 329
The following BLAST results are available for this feature:
BLAST of NO12G03410.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853957.14.900e-9368.64hypothetical protein NGA_0432601 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03410NO12G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03410.2NO12G03410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03410.2.cds1NO12G03410.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03410.2.cds2NO12G03410.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03410.2.cds3NO12G03410.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03410.2 ID=NO12G03410.2|Name=NO12G03410.2|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGAGCCCTTGGCTCCCGCAT
CCACCACCTCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGC
GGGCTTCAAAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGA
AAGCACGACTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGG
TTGCCTACAGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCG
TGTGCCTTCGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAAT
GGAGTTTTTTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATA
TTTTTGTCTTCATCATGCTGTTCGAGTACTTTAAGGTTCCCTTTGAATAC
CAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGCGGTCGCCATGCGGGG
TGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGAGGTTCCGATGGGTGG
TGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCGTTCAAGCTGCTGGCG
GAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAGCGACAACTTGATGTT
GAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATGAGTACGATGGGAACA
AGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCGACGCCCCTGTTCATG
TGCTTGATTTGTATTGAACTGTCAGATTTCGTGTTTGCCGTGGACTCCAT
TCCGGCGGTGTTGGGCGTGTCCAAGGTATGTGATGCTCCCTCCCTTCTGT
CTTATTCCCGGTTGTGTTTTGGAGGGTTCAATCGCAGCATCTTGATAAGC
ACAAACGTCACTTCCCTGACTTTTTCCTTGCCTCCCTCCCTCCCGTCCTC
CCTCCCTCCTTCCCCTCTCTTATCCTTTAGGACCCCCTCATTGTCTACTC
CTCCAACATCTTCGCCATCATGGCCCTGCGTTCCCTCTACACGCTGGTGG
CCACTGCTGTCAACACGCTCGAGTACATCAAGCCCTCTGTGGCGTTAGTC
TTGGCCTTTGTCGGGGGCAAGATGATCGCGGAGTTCTTTCATGTGGAAGT
CCCCATCTCAGTGTCCCTTTTGGTGGTGATGTCCTTGTTGGGTGGAGGGA
TTGGATTGAGCGTGTTAAAGCAGAGGTTTACTGCGAGAAACGCGGAAACA
AAGCGGTAGATGGAGAGCAGGGGGGGGAGGGGTGTAGTGTACATTTCTCA
CATTATGTGGCCAGTTGTGAGAGTGAGATCGGGAGAGAAGGTGAGAGGGA
AGGTGGGAGGGACAACTGCGTTCATTAGTTGGTCTGCGGTGGGAGGTGAA
ACGGGAGTTTCGTGAGGAAATCATGAAAAGAGCACGATACGCTAAAAAAA
ATGCTCAGAGAGAACTGCTCTTCTGCGTGCGTGACCTCCCCACACAGGCC
AACACCCTCCCAACGCAAGCTAGCATTGCATGAAGTTAAAAAACAGATAG
ATCATTGACGCAAAGCGGTGCATACCTTAGCTAGCTATTATTGACATTCC
TGTGAGATTTCTCCCTACCGCCGGAGACACATTTTGCACAATGTCTTGGC
CTTGACAAT
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protein sequence of NO12G03410.2

>NO12G03410.2-protein ID=NO12G03410.2-protein|Name=NO12G03410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MRAFYFCLLGLAASSCDVSPSSLSDSRRAARLLTQSPEPLAPASTTSPLA
PLPKWTTRRGGLQNPFRKHKQTAPPVESTTSNKAPAVTKIDPAVAYSTAV
RRTMLAVGAACAFGFGLWYIEGKKSAMEFFAGYLIEESLSVDNIFVFIML
FEYFKVPFEYQSRALTWGIVGAVAMRGVMISVGVAAIQRFRWVVLMFAGI
LLGSAFKLLAETGHEGGEEDLSDNLMLRVAKKCVNAVDEYDGNKFFTKRN
GKRFATPLFMCLICIELSDFVFAVDSIPAVLGVSKVCDAPSLLSYSRLCF
GGFNRSILISTNVTSLTFSLPPSLPSSLPPSPLLSFRTPSLSTPPTSSPS
WPCVPSTRWWPLLSTRSSTSSPLWR*
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mRNA from alignment at chr12:935834..937957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03410.2 ID=NO12G03410.2|Name=NO12G03410.2|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at chr12:935834..937957- (Nannochloropsis oceanica)
AGGGAGATCTGTACCACGCGCCAGAATCTGCAGCAATTGCCATCGCGCCT
TCCCCACTCGCTACATCACCATGCGCGCCTTCTATTTTTGCCTCTTAGGC
TTGGCGGCTTCTTCATGTGATGTGTCGCCTTCGTCCCTGTCAGACAGCAG
GCGGGCTGCACGGTTGTTGACACAATCACCAGGTATGATTTAATAACTAT
CTTTACATGTGTAAGCGGTATGCCTTGGCCCCGTGTGGCTACCATCATCC
TCATTTCAAGTCGCACTCCCCTCTTCCAGTTCTTCCACACACGTCAGACC
CCTTCCAAGCTGAAATCCCCCTCCTTTTTGGGTGGCGTGTTAAAGCGTAA
CCCTAACCTTAAGAAAGATGAAATTTACAGGTGTATTTCCATTTTCGTTC
TTCCTCCCCCTTATTTATCAACAGAGCCCTTGGCTCCCGCATCCACCACC
TCGCCCTTGGCCCCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCA
AAACCCCTTTCGAAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGA
CTAGCAACAAGGCACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTAC
AGCACGGCGGTTCGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTT
CGGGTTTGGCTTGTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTT
TTGCCGGGTATCTGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTC
TTCATCATGCTGTTCGAGTACTTTAAGGTAAGAAGCGGGGAAAGGGAGGA
TGTGGTAGCGTTGACAGAGGAAAATTGCGCGAAAGGTTCATTGCTTTTAC
GCAGAATACTCCACAGTTTCGTTTCTTCACTTCTCTTTACCTCCTTTCAG
GTTCCCTTTGAATACCAATCGCGTGCCCTAACGTGGGGAATTGTCGGGGC
GGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAGTGGCCGCGATTCAGA
GGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATATTGCTGGGGAGCGCG
TTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGGGGAGGAGGATTTGAG
CGACAACTTGATGTTGAGGGTGGCGAAGAAATGTGTGAATGCCGTGGATG
AGTACGATGGGAACAAGTTCTTCACGAAGAGGAACGGAAAGCGATTCGCG
ACGCCCCTGTTCATGTGCTTGATTTGTATTGAACTGTCAGATTTCGTGTT
TGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGTCCAAGGTATGTGATG
CTCCCTCCCTTCTGTCTTATTCCCGGTTGTGTTTTGGAGGGTTCAATCGC
AGCATCTTGATAAGCACAAACGTCACTTCCCTGACTTTTTCCTTGCCTCC
CTCCCTCCCGTCCTCCCTCCCTCCTTCCCCTCTCTTATCCTTTAGGACCC
CCTCATTGTCTACTCCTCCAACATCTTCGCCATCATGGCCCTGCGTTCCC
TCTACACGCTGGTGGCCACTGCTGTCAACACGCTCGAGTACATCAAGCCC
TCTGTGGCGTTAGTCTTGGCCTTTGTCGGGGGCAAGATGATCGCGGAGTT
CTTTCATGTGGAAGTCCCCATCTCAGTGTCCCTTTTGGTGGTGATGTCCT
TGTTGGGTGGAGGGATTGGATTGAGCGTGTTAAAGCAGAGGTTTACTGCG
AGAAACGCGGAAACAAAGCGGTAGATGGAGAGCAGGGGGGGGAGGGGTGT
AGTGTACATTTCTCACATTATGTGGCCAGTTGTGAGAGTGAGATCGGGAG
AGAAGGTGAGAGGGAAGGTGGGAGGGACAACTGCGTTCATTAGTTGGTCT
GCGGTGGGAGGTGAAACGGGAGTTTCGTGAGGAAATCATGAAAAGAGCAC
GATACGCTAAAAAAAATGCTCAGAGAGAACTGCTCTTCTGCGTGCGTGAC
CTCCCCACACAGGCCAACACCCTCCCAACGCAAGCTAGCATTGCATGAAG
TTAAAAAACAGATAGATCATTGACGCAAAGCGGTGCATACCTTAGCTAGC
TATTATTGACATTCCTGTGAGATTTCTCCCTACCGCCGGAGACACATTTT
GCACAATGTCTTGGCCTTGACAAT
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Coding sequence (CDS) from alignment at chr12:935834..937957-

>NO12G03410.2 ID=NO12G03410.2|Name=NO12G03410.2|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr12:935834..937957- (Nannochloropsis oceanica)
ATGCGCGCCTTCTATTTTTGCCTCTTAGGCTTGGCGGCTTCTTCATGTGA
TGTGTCGCCTTCGTCCCTGTCAGACAGCAGGCGGGCTGCACGGTTGTTGA
CACAATCACCAGAGCCCTTGGCTCCCGCATCCACCACCTCGCCCTTGGCC
CCCCTTCCCAAGTGGACCACGCGCCGAGGCGGGCTTCAAAACCCCTTTCG
AAAGCATAAGCAAACTGCCCCGCCCGTCGAAAGCACGACTAGCAACAAGG
CACCTGCAGTTACCAAGATCGATCCTGCGGTTGCCTACAGCACGGCGGTT
CGCCGAACAATGCTTGCGGTAGGCGCCGCGTGTGCCTTCGGGTTTGGCTT
GTGGTACATCGAGGGAAAGAAGTCTGCAATGGAGTTTTTTGCCGGGTATC
TGATCGAGGAAAGTCTGAGTGTGGATAATATTTTTGTCTTCATCATGCTG
TTCGAGTACTTTAAGGTTCCCTTTGAATACCAATCGCGTGCCCTAACGTG
GGGAATTGTCGGGGCGGTCGCCATGCGGGGTGTGATGATCTCCGTGGGAG
TGGCCGCGATTCAGAGGTTCCGATGGGTGGTGTTAATGTTCGCCGGTATA
TTGCTGGGGAGCGCGTTCAAGCTGCTGGCGGAAACGGGGCATGAAGGGGG
GGAGGAGGATTTGAGCGACAACTTGATGTTGAGGGTGGCGAAGAAATGTG
TGAATGCCGTGGATGAGTACGATGGGAACAAGTTCTTCACGAAGAGGAAC
GGAAAGCGATTCGCGACGCCCCTGTTCATGTGCTTGATTTGTATTGAACT
GTCAGATTTCGTGTTTGCCGTGGACTCCATTCCGGCGGTGTTGGGCGTGT
CCAAGGTATGTGATGCTCCCTCCCTTCTGTCTTATTCCCGGTTGTGTTTT
GGAGGGTTCAATCGCAGCATCTTGATAAGCACAAACGTCACTTCCCTGAC
TTTTTCCTTGCCTCCCTCCCTCCCGTCCTCCCTCCCTCCTTCCCCTCTCT
TATCCTTTAGGACCCCCTCATTGTCTACTCCTCCAACATCTTCGCCATCA
TGGCCCTGCGTTCCCTCTACACGCTGGTGGCCACTGCTGTCAACACGCTC
GAGTACATCAAGCCCTCTGTGGCGTTAG
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Synonyms
Publications