NO12G03380.2, NO12G03380.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03380.2
Unique NameNO12G03380.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3240
Alignment locationchr12:928220..931828 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:928220..931828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03380.2 vs.
Match: XP_005853734.1 (signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526]; EKU22624.1 signal peptidase complex subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 216.1 bits (549), Expect = 7.200e-53
Identity = 109/151 (72.19%), Postives = 125/151 (82.78%), Query Frame = 0 
Query:    1 MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDAILTTQPLEGMKEGG--LRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIGTVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGK------GEKKKTK 144
            MV+AC FA++AQFYPMPFPESRPLLGVCCLAYFLAST+IQLIVSY EQD ILTTQPL    + G  L+VRTQFPRFQD YTV +EE G+++PPTVSSKFSIG VFDEEGNFYEEGLA+EV+ L+DRY+K+ WD  E +      GEKKK K
Sbjct:   60 MVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKAGEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSKFSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWDVAEKEERKRKGGEKKKKK 210
The following BLAST results are available for this feature:
BLAST of NO12G03380.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853734.17.200e-5372.19signal peptidase complex subunit 2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03380NO12G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03380.2NO12G03380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03380.2.cds1NO12G03380.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03380.2.cds2NO12G03380.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03380.2 ID=NO12G03380.2|Name=NO12G03380.2|organism=Nannochloropsis oceanica|type=mRNA|length=3240bp
TAGGGGTTCAAGGACGAATATGTTCTTGTCGCTTGTTTGCTTGCCCTGTT
TGGCCCGTTGCTTAGTGGCTACATGTAAAATATATCAATACACTCGCTGC
CTGCTCACACACACTCACATGCCCTTCATCCCTCCTTCACCTTCCACTCC
TTCATCTCGGCATTGGCAATCTCTCTCTCCCGCATCGACAGGCTTCGGTA
AACTTTCCCCGTAACTGCCTCCCACTTCTTCGTCTCTTTGACGCTCAATG
CAGGCACATAAGCTGGGTTTGCCTGGGCTGCACGGAACTTCTTGTTGTGC
AGGGCAACCAATGCTTTCATCTCCTCATCCTCCGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTATGCTTTCGCTGCGTTTGACACCCCCGGCGGCTGCTT
TCCGTTTTCCTCCTGCTCCTCCCCTGCCTGCTGCGGCTTCCCTTGGTCTG
CCATTCACCACCTTCACATAAGCACGGCCGCTGCTACAAGTGCTGCTGTT
GCTACTGCTGGCTGTTCCTGTCGTCATCCGATGTGCCTGCTGTGGGACCG
CTGGCTTTCGCGCCGGAGGACCGACTGGACCAGCACCATCACTCCTTCCT
CCATCCATCCCTCCTCCTCTCCTCCCCCCTTCTCCCTTTCCCATTTTGGC
CATCTTAAACTCTTCCAACTTCTGTCGCATCAACTGGCCTGCCGATGCTT
GTCCTTGCAACCCTCTTTCTGCTCCTCCTCCTCTACCTCTCACGCCACCG
ATCCCCTGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTCTCCGTC
ACAATACTCCTCCATCAACCCTTCTTCTCCCTCCTCTTCTTCCTCCTCAT
CCACCTCCATCCTCACCTCCCTTCGCCTTACAAATGACGACATGTGTGCC
CTCGGCCGCTTCTGCCCCCCCCCTCCTGCTGCTGCTGCTGCTGCTGCTTT
TGCCGCCCCTCCACCATTTCCTCCTGCAGCCGGCTTGAGTAATCTGGGTG
GGGGAGGACCCATGACCACTTGCTGCTGTGACCCTTCTCCATTTTCTTTG
TTCGCTCCTCCTCCTCTTTCTGCTCCGCTATTGCTGGTCGTGCTGGTATT
GCTGCCTCGAATGCTGCTCCCCCGCCGGACCGCCAAAGCTGCTGCTGCTG
CTGCGTTGGCTGCTGCGACCGCCGCCCCCACCCCTACCAATAAGCCTTGA
TTTGAATAGCGACGGGCTGTGCCGCTCATGCGCCGGTTCAATGATGAAAA
AGAGGAGGAGGTGGAGGAGGCGGAGGAGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
CGGCCAGACTGCAGGCGCCAATCTCGATAGAGCTCTGGGTGGGCCGTCTG
AAACCAGGGGTCCAGTTTAACCTGTTTGATTGCGGAGGGGAGGGAGGTAT
GAGTAGCGGATGGAGCTAATTATGATGGGGGCGTCCTTCCAGGTGTGGAG
TGGGTGCGGCATGGCAGGCTGAATCACGGGGAAGCATCTCACTGACCTGT
TGGTACTCCTCTAGCTTTTGGCGGACATCGGCAAGATCCGTCCATCCCAA
GCCTGGGGGCAGAAAGTCAAAGTCCCAGACGTCCTCCATCTGCTGTATTG
GCGCTTGTGTTGCTTGTGGACGTCGGTAAGGCTGTCTATGCATTCGAATA
AGGGGGATCAGAGTTAACGAAGGAGGGCGTGGGGAAGTGCTTATTGCTTC
GCAAAACCAGGCCCAGGAAGCCTAAATGGTGCACGGTGCGGAAAAGGAAA
GTAGGGGATTATTGTGTATTATTACGGAGAGTGGGCGTTGCCCAGAGATC
TGCTGGTCACTGGTTTTGTATGGAGCACGCAGACACATGCACCCACGGCT
CGACGTCACGGCGGTCGGCGATGAGAGCCTCATTTGAAGCCTTCCCTTCC
CGCCTTAGCTGTCCACGACCAGCAGCGTGTGCAACTCGCCCATCAGTAGC
CCACGCATCCACCCAAACACATAGATAGGAGACAGGACTACAAGAAGATC
CACGTCCATGCCGATGGTTGTGGCATGAGCATCATGCTGATCATCACCAT
AATCATCATCATCATCATCACCACCCTTACCACGCCGTTGCCCCTCTTCC
TTTACTCCCCTCCGTACACACCCCACAGTCAATCTGGTCGCACGAATCAA
GCCTTTTACCACTCCCATCACCATCAGTATCCCCAGTACCAACACCATGG
CCGCTCCACCAACCGCAAATCTAGGGGGTGCCGACGAAGAGGAGGAGCCC
CTTCATATCGACACGGGCGACCAAATGAAAGTGAAGCAAGTGATGGATGA
AGCAGTCGTCAAAGCCATTGTAGACGCGGGATACGAAGGTATTGTTGAGT
GTGATAAGTTGGACTGATAGCGAGCTTTATCATCCTTGCACCGTCTCTTG
TATCATCCTCCTCTCTTTGTGCGCCCCTCTCCTTCAGTGTCTCGATCTTG
CATTTGGTTGCGCGGCGATCAGCGCTATCTACCTACGTTGAATTCTGGCT
TTCCATGCCATATTAAGGTTGCACACCATCTGTCCTTTCACCCATCATCC
TCCCCCTTCCCCCAGAAAACTATTTCTACGACAATATCAAGCTCACCCTT
ATGGTCGTCGCCTGTGCCTTCGCCATGGTCGCGCAATTCTACCCTATGCC
CTTCCCTGAATCACGCCCTTTGTTGGGAGTGTGCTGCTTGGCCTACTTCC
TAGCTAGCACCGTCATCCAGCTCATTGTTTCTTACGCCGAGCAAGACGCG
ATCCTGACCACTCAGCCCTTGGAGGGAATGAAGGAGGGGGGGTTGAGGGT
GCGGACTCAATTTCCCCGGTTTCAAGATGTGTATACGGTGATTTTGGAAG
AAGTAGGAGTCAAGGAACCGCCTACGGTGTCGAGCAAATTTTCCATCGGC
ACGGTTTTTGACGAAGAAGGGAATTTTTACGAGGAGGGATTGGCACAGGA
AGTCAAGGCGTTGGTCGACCGTTACCGGAAAAAACGTTGGGATGCCCCGG
AGGGGAAGGGGGAGAAGAAGAAGACAAAGTAAGAGGGGAGGGAGGTTTGA
GAGAGGGGTTGAGGAGGGGGGAGATGTATGTAGATGGGGCACATGCAGAA
GCAGTAATGGACTTGTCGTAAGCCGCTTTGACAGGGTAGGGTTACCAATA
GAAGAAGGAAAGAAAGAGGACAACAGAAAGCAGGCAGGCA
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protein sequence of NO12G03380.2

>NO12G03380.2-protein ID=NO12G03380.2-protein|Name=NO12G03380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MVVACAFAMVAQFYPMPFPESRPLLGVCCLAYFLASTVIQLIVSYAEQDA
ILTTQPLEGMKEGGLRVRTQFPRFQDVYTVILEEVGVKEPPTVSSKFSIG
TVFDEEGNFYEEGLAQEVKALVDRYRKKRWDAPEGKGEKKKTK*
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mRNA from alignment at chr12:928220..931828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03380.2 ID=NO12G03380.2|Name=NO12G03380.2|organism=Nannochloropsis oceanica|type=mRNA|length=3609bp|location=Sequence derived from alignment at chr12:928220..931828- (Nannochloropsis oceanica)
TAGGGGTTCAAGGACGAATATGTTCTTGTCGCTTGTTTGCTTGCCCTGTT
TGGCCCGTTGCTTAGTGGCTACATGTAAAATATATCAATACACTCGCTGC
CTGCTCACACACACTCACATGCCCTTCATCCCTCCTTCACCTTCCACTCC
TTCATCTCGGCATTGGCAATCTCTCTCTCCCGCATCGACAGGCTTCGGTA
AACTTTCCCCGTAACTGCCTCCCACTTCTTCGTCTCTTTGACGCTCAATG
CAGGCACATAAGCTGGGTTTGCCTGGGCTGCACGGAACTTCTTGTTGTGC
AGGGCAACCAATGCTTTCATCTCCTCATCCTCCGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTATGCTTTCGCTGCGTTTGACACCCCCGGCGGCTGCTT
TCCGTTTTCCTCCTGCTCCTCCCCTGCCTGCTGCGGCTTCCCTTGGTCTG
CCATTCACCACCTTCACATAAGCACGGCCGCTGCTACAAGTGCTGCTGTT
GCTACTGCTGGCTGTTCCTGTCGTCATCCGATGTGCCTGCTGTGGGACCG
CTGGCTTTCGCGCCGGAGGACCGACTGGACCAGCACCATCACTCCTTCCT
CCATCCATCCCTCCTCCTCTCCTCCCCCCTTCTCCCTTTCCCATTTTGGC
CATCTTAAACTCTTCCAACTTCTGTCGCATCAACTGGCCTGCCGATGCTT
GTCCTTGCAACCCTCTTTCTGCTCCTCCTCCTCTACCTCTCACGCCACCG
ATCCCCTGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTCTCCGTC
ACAATACTCCTCCATCAACCCTTCTTCTCCCTCCTCTTCTTCCTCCTCAT
CCACCTCCATCCTCACCTCCCTTCGCCTTACAAATGACGACATGTGTGCC
CTCGGCCGCTTCTGCCCCCCCCCTCCTGCTGCTGCTGCTGCTGCTGCTTT
TGCCGCCCCTCCACCATTTCCTCCTGCAGCCGGCTTGAGTAATCTGGGTG
GGGGAGGACCCATGACCACTTGCTGCTGTGACCCTTCTCCATTTTCTTTG
TTCGCTCCTCCTCCTCTTTCTGCTCCGCTATTGCTGGTCGTGCTGGTATT
GCTGCCTCGAATGCTGCTCCCCCGCCGGACCGCCAAAGCTGCTGCTGCTG
CTGCGTTGGCTGCTGCGACCGCCGCCCCCACCCCTACCAATAAGCCTTGA
TTTGAATAGCGACGGGCTGTGCCGCTCATGCGCCGGTTCAATGATGAAAA
AGAGGAGGAGGTGGAGGAGGCGGAGGAGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
CGGCCAGACTGCAGGCGCCAATCTCGATAGAGCTCTGGGTGGGCCGTCTG
AAACCAGGGGTCCAGTTTAACCTGTTTGATTGCGGAGGGGAGGGAGGTAT
GAGTAGCGGATGGAGCTAATTATGATGGGGGCGTCCTTCCAGGTGTGGAG
TGGGTGCGGCATGGCAGGCTGAATCACGGGGAAGCATCTCACTGACCTGT
TGGTACTCCTCTAGCTTTTGGCGGACATCGGCAAGATCCGTCCATCCCAA
GCCTGGGGGCAGAAAGTCAAAGTCCCAGACGTCCTCCATCTGCTGTATTG
GCGCTTGTGTTGCTTGTGGACGTCGGTAAGGCTGTCTATGCATTCGAATA
AGGGGGATCAGAGTTAACGAAGGAGGGCGTGGGGAAGTGCTTATTGCTTC
GCAAAACCAGGCCCAGGAAGCCTAAATGGTGCACGGTGCGGAAAAGGAAA
GTAGGGGATTATTGTGTATTATTACGGAGAGTGGGCGTTGCCCAGAGATC
TGCTGGTCACTGGTTTTGTATGGAGCACGCAGACACATGCACCCACGGCT
CGACGTCACGGCGGTCGGCGATGAGAGCCTCATTTGAAGCCTTCCCTTCC
CGCCTTAGCTGTCCACGACCAGCAGCGTGTGCAACTCGCCCATCAGTAGC
CCACGCATCCACCCAAACACATAGATAGGAGACAGGACTACAAGAAGATC
CACGTCCATGCCGATGGTTGTGGCATGAGCATCATGCTGATCATCACCAT
AATCATCATCATCATCATCACCACCCTTACCACGCCGTTGCCCCTCTTCC
TTTACTCCCCTCCGTACACACCCCACAGTCAATCTGGTCGCACGAATCAA
GCCTTTTACCACTCCCATCACCATCAGTATCCCCAGTACCAACACCATGG
CCGCTCCACCAACCGCAAATCTAGGGGGTGCCGACGGTAAGCGCCTGCAC
CCAAATACCAGCCTCCCCACTATCCCCCCTGTCCCCTGCCCATCACTTGC
CCCATCCTGACTTGCAACGCGATACAGCATCGATTTTCAGCTTCTTAGTT
GTGCGTTTATTCCTTTTTTTTCGCTACTCTCCCTGCTGACCTCCCTCGCA
CACAACAGAAGAGGAGGAGCCCCTTCATATCGACACGGGCGACCAAATGA
AAGTGAAGCAAGTGATGGATGAAGCAGTCGTCAAAGCCATTGTAGACGCG
GGATACGAAGGTATTGTTGAGTGTGATAAGTTGGACTGATAGCGAGCTTT
ATCATCCTTGCACCGTCTCTTGTATCATCCTCCTCTCTTTGTGCGCCCCT
CTCCTTCAGTGTCTCGATCTTGCATTTGGTTGCGCGGCGATCAGCGCTAT
CTACCTACGTTGAATTCTGGCTTTCCATGCCATATTAAGGTTGCACACCA
TCTGTCCTTTCACCCATCATCCTCCCCCTTCCCCCAGAAAACTATTTCTA
CGACAATATCAAGCTCACCCTTATGGTCGTCGCCTGTGCCTTCGCCATGG
TCGCGCAATTCTACCCTATGCCCTTCCCTGAATCACGCCCTTTGTTGGGA
GTGTGCTGCTTGGCCTACTTCCTAGCTAGCACCGTCATCCAGCTCATTGT
TTCTTACGCCGAGCAAGACGCGATCCTGACCACTCAGCCCTTGGAGGGAA
TGAAGGAGGGGGGGTTGAGGGTGCGGACTCAATTTCCCCGGTTTCAAGAT
GTGTATACGGTGATTTTGGAAGAAGTAGGAGTCAAGGAACCGCCTACGGT
GTCGAGTAAGTGTTGGAGAGCGAGGGAAGGGAGGGAAGGAGGGAGGGAGG
GAAGTAGGGAGGGAAGGAGGGAGGGGGGAGAAGGGATGGAGTGGGCGTTA
CAATACAACATCACTCTTTCCCTCTAGGATTTCTCTATGGTGCGTTATTT
GTCACTTTCTCATTATTTATTTCTTATGCTGTACGTCTTTTCCACCCTAC
AGGCAAATTTTCCATCGGCACGGTTTTTGACGAAGAAGGGAATTTTTACG
AGGAGGGATTGGCACAGGAAGTCAAGGCGTTGGTCGACCGTTACCGGAAA
AAACGTTGGGATGCCCCGGAGGGGAAGGGGGAGAAGAAGAAGACAAAGTA
AGAGGGGAGGGAGGTTTGAGAGAGGGGTTGAGGAGGGGGGAGATGTATGT
AGATGGGGCACATGCAGAAGCAGTAATGGACTTGTCGTAAGCCGCTTTGA
CAGGGTAGGGTTACCAATAGAAGAAGGAAAGAAAGAGGACAACAGAAAGC
AGGCAGGCA
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Coding sequence (CDS) from alignment at chr12:928220..931828-

>NO12G03380.2 ID=NO12G03380.2|Name=NO12G03380.2|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr12:928220..931828- (Nannochloropsis oceanica)
ATGGTCGTCGCCTGTGCCTTCGCCATGGTCGCGCAATTCTACCCTATGCC
CTTCCCTGAATCACGCCCTTTGTTGGGAGTGTGCTGCTTGGCCTACTTCC
TAGCTAGCACCGTCATCCAGCTCATTGTTTCTTACGCCGAGCAAGACGCG
ATCCTGACCACTCAGCCCTTGGAGGGAATGAAGGAGGGGGGGTTGAGGGT
GCGGACTCAATTTCCCCGGTTTCAAGATGTGTATACGGTGATTTTGGAAG
AAGTAGGAGTCAAGGAACCGCCTACGGTGTCGAGCAAATTTTCCATCGGC
ACGGTTTTTGACGAAGAAGGGAATTTTTACGAGGAGGGATTGGCACAGGA
AGTCAAGGCGTTGGTCGACCGTTACCGGAAAAAACGTTGGGATGCCCCGG
AGGGGAAGGGGGAGAAGAAGAAGACAAAGTAA
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Synonyms
Publications