NO12G02230.1, NO12G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02230.1
Unique NameNO12G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr12:636464..639345 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:636464..639345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02230.1 vs.
Match: XP_005853641.1 (cell cycle arrest protein BUB3 [Nannochloropsis gaditana CCMP526]; XP_005856120.1 cell cycle arrest protein BUB3 [Nannochloropsis gaditana CCMP526]; EKU20256.1 cell cycle arrest protein BUB3 [Nannochloropsis gaditana CCMP526]; EKU22722.1 cell cycle arrest protein BUB3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 588.6 bits (1516), Expect = 1.800e-164
Identity = 279/318 (87.74%), Postives = 300/318 (94.34%), Query Frame = 0 
Query:    1 MEPGSERPLENPAQDGISSLAFSPSSSNLLLISSWDKTARLYDATSNIAKGIWRNHAAVLDCAVQDDHTGFSGGLDRAVRMIYLNRPEDPGLNIGSHAKPVSCMEFSRELGALVTGGWDGHVHVWDPRTQGEARSLPTSEKVFTLAVSGNRIVVGTSDRSVLIYDVRKLNDPEDRRESSLKHQTRCIRISPDNSGYVLASVEGRVAVEYFDPSPAVQAKRYAFKCHRQGDLVFPVNAVAFHPTHGTFATGGCDGMVYTWDGQNKKRLAQLGPYKTSIAALAYNFDGSLLALAASYTYEEGEREHPIDAVYLRCPLEGE 319
            MEPGSER L+NP QDGISSLAFSPSSSNLLL+SSWDKTARLYD +SN+AKGIW+NHAAVLDC VQDDHTGFSGGLDRAVR IYLN+PEDPGLNIGSHA  VSCMEFSRELGALVTGGWDG+VH+WDPR+QG A+SLP SEKVFTLAVSG R+VVGTSDRSVLIYDVRKL+ P+DRRESSLKHQTRCIRI+PD+SGYVLASVEGRVAVEYFD S  VQA+RYAFKCHRQ DLV+PVNAVAFHPTHGTFATGGCD MVYTWDGQNKKRLA LGPYKTSIAAL+YNFDGSL+A+AASYTYEEGE+EHP DAVYLRCPLEGE
Sbjct:    1 MEPGSERLLDNPPQDGISSLAFSPSSSNLLLVSSWDKTARLYDTSSNVAKGIWQNHAAVLDCTVQDDHTGFSGGLDRAVRKIYLNQPEDPGLNIGSHAGEVSCMEFSRELGALVTGGWDGNVHIWDPRSQGRAQSLPPSEKVFTLAVSGQRLVVGTSDRSVLIYDVRKLSAPDDRRESSLKHQTRCIRIAPDHSGYVLASVEGRVAVEYFDLSTEVQAQRYAFKCHRQDDLVYPVNAVAFHPTHGTFATGGCDAMVYTWDGQNKKRLAHLGPYKTSIAALSYNFDGSLMAIAASYTYEEGEKEHPPDAVYLRCPLEGE 318
The following BLAST results are available for this feature:
BLAST of NO12G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853641.11.800e-16487.74cell cycle arrest protein BUB3 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02230NO12G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02230.1NO12G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02230.1.cds1NO12G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02230.1.cds2NO12G02230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02230.1.cds3NO12G02230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02230.1.cds4NO12G02230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02230.1.cds5NO12G02230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02230.1.cds6NO12G02230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02230.1 ID=NO12G02230.1|Name=NO12G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGGAGCCCGGCAGTGAACGACCTTTGGAAAATCCAGCGCAGGATGGTAT
CTCCTCCTTGGCCTTCTCCCCCAGCAGCTCCAACCTCTTGCTCATTTCCT
CTTGGGACAAGACCGCCCGCTTATACGACGCGACATCCAATATCGCCAAG
GGCATTTGGAGGAACCATGCTGCCGTCTTGGACTGTGCCGTGCAAGACGA
TCATACAGGCTTTTCTGGGGGGCTTGACCGGGCGGTGCGCATGATTTACT
TAAACCGTCCCGAGGACCCTGGTTTGAACATTGGGAGCCACGCGAAGCCC
GTGAGCTGCATGGAGTTTTCGAGGGAGTTGGGTGCCTTGGTCACGGGTGG
ATGGGACGGCCATGTGCACGTTTGGGATCCACGCACACAAGGAGAGGCAC
GAAGCTTACCGACATCGGAAAAAGTCTTTACATTGGCAGTGTCGGGTAAC
CGCATTGTGGTCGGCACTTCAGACCGTTCCGTCCTCATTTACGACGTAAG
AAAGCTGAACGACCCAGAGGACCGGCGGGAGTCCTCCCTGAAACACCAAA
CCCGATGCATCCGTATATCCCCCGATAACAGCGGCTACGTCCTTGCCTCC
GTAGAAGGCCGCGTGGCAGTCGAGTATTTTGACCCCTCCCCGGCTGTCCA
AGCTAAGCGATATGCCTTCAAATGCCACCGACAGGGCGACCTCGTATTCC
CCGTCAATGCTGTGGCCTTCCATCCCACTCACGGCACATTCGCTACGGGT
GGTTGTGACGGGATGGTGTATACATGGGACGGACAGAACAAGAAGAGGCT
GGCACAACTGGGGCCTTACAAGACGAGCATTGCTGCGCTTGCGTACAACT
TTGATGGGTCACTTTTGGCCTTGGCTGCGTCATACACCTATGAGGAGGGC
GAGAGAGAGCATCCCATCGATGCGGTGTATTTGCGTTGCCCACTTGAGGG
TGAGCAGGAGGAGGAGGAGGGAAAGGAGAAGGAGAAGGAGAAGGAGGGGG
GGGTGGAGGAGGAGGTGGACGAGGAGGAGGTGGACGAGGAAGTGGACGAG
AAAGAGGGGGACGAGAAGGGAGACGAGGAGAAGAAGAGGAAGAAGAAGGA
GGAGGGAGAGACGGAGGGAGACGAGGAGTGGGTGGAAGGGGAAGGGGAGG
AGAAGAAGGAGGCGGTGGAAGCAGAGGGGGATGAGAAGCAGCAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAAGGGGGAAGAGGAGGAGGAGGAAGA
GAAAGGGGAGGAGGAGGCGGAGGCGGTGGAAGCAGAGGAGGAGAGGGGGG
AAGGAGGAGGAGGAGGAGGAGGAGGTCACGGGCGGGCCATCCGAGGACTT
TGTTGGTGTGACACCTGTGAACAATTCTTGTCCCGGGACGGCAATGGGGC
ACGTAACATCCTGCGGGTGTAA
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protein sequence of NO12G02230.1

>NO12G02230.1-protein ID=NO12G02230.1-protein|Name=NO12G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MEPGSERPLENPAQDGISSLAFSPSSSNLLLISSWDKTARLYDATSNIAK
GIWRNHAAVLDCAVQDDHTGFSGGLDRAVRMIYLNRPEDPGLNIGSHAKP
VSCMEFSRELGALVTGGWDGHVHVWDPRTQGEARSLPTSEKVFTLAVSGN
RIVVGTSDRSVLIYDVRKLNDPEDRRESSLKHQTRCIRISPDNSGYVLAS
VEGRVAVEYFDPSPAVQAKRYAFKCHRQGDLVFPVNAVAFHPTHGTFATG
GCDGMVYTWDGQNKKRLAQLGPYKTSIAALAYNFDGSLLALAASYTYEEG
EREHPIDAVYLRCPLEGEQEEEEGKEKEKEKEGGVEEEVDEEEVDEEVDE
KEGDEKGDEEKKRKKKEEGETEGDEEWVEGEGEEKKEAVEAEGDEKQQEE
EEEEEEEEKGEEEEEEEKGEEEAEAVEAEEERGEGGGGGGGGHGRAIRGL
CWCDTCEQFLSRDGNGARNILRV*
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mRNA from alignment at chr12:636464..639345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02230.1 ID=NO12G02230.1|Name=NO12G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp|location=Sequence derived from alignment at chr12:636464..639345+ (Nannochloropsis oceanica)
ATGGAGCCCGGCAGTGAACGACCTTTGGAAAATCCAGCGCAGGATGGTAT
CTCCTCCTTGGCCTTCTCCCCCAGCAGCTCCAACCTCTTGCTCATTTCCT
CTTGGGACAAGACCGCCCGCTTATACGACGCGACATCCAATATCGCCAAG
GGCATTTGGAGGAACCATGCTGCCGTCTTGGACTGTGCCGTGCAAGACGA
TCATACAGGCTTTTCTGGGGGGCTTGACCGGGCGGTGCGCATGTACGTTT
GAAAGGGGGTGGAAGTTTTTGTTCTCTAGTCTAGTGTTCAGGGAAGACCC
TCTCGTCTCGCTTACTTACCCCTCACATTACTCTCCCCTCGGACGACTCA
GGATTTACTTAAACCGTCCCGAGGACCCTGGTTTGAACATTGGGAGCCAC
GCGAAGCCCGTGAGCTGCATGGAGTTTTCGAGGGAGTTGGGTGCCTTGGT
CACGGGTGGATGGGACGGCCATGTGCACGTTTGGTAAGGAGAAGAAAGGA
GGAGCAAAAGAAGAAAGGGAGGAAAGATCAGTAAGATAGGAAGGTGATGG
AGAGTTTTGAAAATAGGGGCATATTAGTAACCGGTTACAGGCATGCGCTG
TAAGAGAAAGAAATACAGCTCCTCTCCTAACCCGTGCTCACAACACCCCT
CCCTGACACAATTGGATATAAATAGGGATCCACGCACACAAGGAGAGGCA
CGAAGCTTACCGACATCGGAAAAAGTCTTTACATTGGCAGTGTCGGGTAA
CCGCATTGTGGTCGGCACTTCAGACCGTTCCGTCCTCATTTACGACGTAA
GGTACGTTTGGTTTTAATTTTTGTTGCAGGAAAGTAGGCGGTAAACGCGC
GGACCAGCACTCAATATTAAATCAAATTGCTGGTTGTGGGCCATTTTCAC
TTACATGCACGAATATACAGAAAGCTGAACGACCCAGAGGACCGGCGGGA
GTCCTCCCTGAAACACCAAACCCGATGCATCCGTATATCCCCCGATAACA
GCGGTGAGTAGTTCTTGCTCGTCCTTGCCTGGTTGATCGCAACATCAGGC
ATGATTCATGGTCGCATCTATCTTATTTACTTTTGGGTGCGGTGTCATGC
CGTACAATCAGGAAAGACACCCACTCGACATTTTCATCCTGTCTTTCTGC
CCAAACATAATGTGTCCCTCATGCCATCTTCCCCGCACTCTTATTTACCG
TGTTAGGCTACGTCCTTGCCTCCGTAGAAGGCCGCGTGGCAGTCGAGTAT
TTTGACCCCTCCCCGGCTGTCCAAGCTAAGCGATATGCCTTCAAATGCCA
CCGACAGGGCGACCTCGTATTCCCCGTCAATGCTGTGGCCTTCCATCCCA
CTCACGGCACATTCGCTACGGGTGGTTGTGACGGGATGGTGTATACATGG
GACGGACAGAACAAGAAGAGGCTGGCACAACTGGGGCCTTACAAGACGAG
CATTGCTGCGCTTGCGTACAACTTTGATGGGTCACTTTTGGCCTTGGCTG
CGTCATACACCTATGAGGAGGGCGAGAGAGAGCATCCCATCGATGCGGTG
TATTTGCGTTGCCCACTTGAGGGTGAGGTCAGGCGCAAGGTCAAGGCCGC
AGGGTGAGTGGGTGGCTTTGCAAAATTTTAGAGAGAAGTAGGAGGGACGG
GGTGTAAAAGGATGCAAATTCAAACTAAAAGACAGATTTAAAAGCATGAA
GTCACAAAGATACCAGGAACAAATATTTAATCTATATGGGGCTATGCGTA
TAGAGTATCTCGAGGCGGAAAGGGGAGTTGATGTGTACTTGAATGACCGT
GGGGGGCGAAAAAAGGTTAGCTACCCTAGGGATTGCCGCAGACATGGTGT
TCCTCCGCATTGGACGGAAGCTTGACGGCGGTGAGGATGATGCAGAGGGT
GAATATGACGAGGATAAATAACAGATCTCTAGAAAAGTGCGAACACCATC
ATTCTAATGTTATCGTGTCTACCACATGTCCAACACACCCGAGATTCACA
CACAAAGAGGAGCCTTTTGCCCAATATCAATTCCTTTTTACTCGTCGCCT
ACACACTCGTCCTATGGTGTTTTTATGAGTGAGAGGGGTGGCTTTAGCAA
TCGAAAAAGCGCGTCTGATCTGCCTTCTGCCATCCTTTCCCGGTCCGATC
AGCACCGCGACTGCAACTTACATTTTGCCACTTTGCCACGGACAACACCA
CACTCTCCATTAGAGCCGTCATTGGACCAAAGAGGGCACCTTGCCTACCC
ATGATACATGTGTGCGTGCACCACCATGATGTGTCATTGGCCCCTCTTGT
TGGTGGGCTCATCCTACCCACTTTTTATCTTGGAACGCCCTCCTGAAGGA
GGAGAAGGAGGGGGAGGACGAGGGAAAGGAGGGGGAGGAAGAGGAGGAGG
GAGAGGATCAGTAGCAGGAGGAGGAGGAGGGAAAGGAGAAGGAGAAGGAG
AAGGAGGGGGGGGTGGAGGAGGAGGTGGACGAGGAGGAGGTGGACGAGGA
AGTGGACGAGAAAGAGGGGGACGAGAAGGGAGACGAGGAGAAGAAGAGGA
AGAAGAAGGAGGAGGGAGAGACGGAGGGAGACGAGGAGTGGGTGGAAGGG
GAAGGGGAGGAGAAGAAGGAGGCGGTGGAAGCAGAGGGGGATGAGAAGCA
GCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGGGAAGAGGAGG
AGGAGGAAGAGAAAGGGGAGGAGGAGGCGGAGGCGGTGGAAGCAGAGGAG
GAGAGGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGTCACGGGCGGGCCAT
CCGAGGACTTTGTTGGTGTGACACCTGTGAACAATTCTTGTCCCGGGACG
GCAATGGGGCACGTAACATCCTGCGGGTGTAA
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Coding sequence (CDS) from alignment at chr12:636464..639345+

>NO12G02230.1 ID=NO12G02230.1|Name=NO12G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr12:636464..639345+ (Nannochloropsis oceanica)
ATGGAGCCCGGCAGTGAACGACCTTTGGAAAATCCAGCGCAGGATGGTAT
CTCCTCCTTGGCCTTCTCCCCCAGCAGCTCCAACCTCTTGCTCATTTCCT
CTTGGGACAAGACCGCCCGCTTATACGACGCGACATCCAATATCGCCAAG
GGCATTTGGAGGAACCATGCTGCCGTCTTGGACTGTGCCGTGCAAGACGA
TCATACAGGCTTTTCTGGGGGGCTTGACCGGGCGGTGCGCATGATTTACT
TAAACCGTCCCGAGGACCCTGGTTTGAACATTGGGAGCCACGCGAAGCCC
GTGAGCTGCATGGAGTTTTCGAGGGAGTTGGGTGCCTTGGTCACGGGTGG
ATGGGACGGCCATGTGCACGTTTGGGATCCACGCACACAAGGAGAGGCAC
GAAGCTTACCGACATCGGAAAAAGTCTTTACATTGGCAGTGTCGGGTAAC
CGCATTGTGGTCGGCACTTCAGACCGTTCCGTCCTCATTTACGACGTAAG
AAAGCTGAACGACCCAGAGGACCGGCGGGAGTCCTCCCTGAAACACCAAA
CCCGATGCATCCGTATATCCCCCGATAACAGCGGCTACGTCCTTGCCTCC
GTAGAAGGCCGCGTGGCAGTCGAGTATTTTGACCCCTCCCCGGCTGTCCA
AGCTAAGCGATATGCCTTCAAATGCCACCGACAGGGCGACCTCGTATTCC
CCGTCAATGCTGTGGCCTTCCATCCCACTCACGGCACATTCGCTACGGGT
GGTTGTGACGGGATGGTGTATACATGGGACGGACAGAACAAGAAGAGGCT
GGCACAACTGGGGCCTTACAAGACGAGCATTGCTGCGCTTGCGTACAACT
TTGATGGGTCACTTTTGGCCTTGGCTGCGTCATACACCTATGAGGAGGGC
GAGAGAGAGCATCCCATCGATGCGGTGTATTTGCGTTGCCCACTTGAGGG
TGAGCAGGAGGAGGAGGAGGGAAAGGAGAAGGAGAAGGAGAAGGAGGGGG
GGGTGGAGGAGGAGGTGGACGAGGAGGAGGTGGACGAGGAAGTGGACGAG
AAAGAGGGGGACGAGAAGGGAGACGAGGAGAAGAAGAGGAAGAAGAAGGA
GGAGGGAGAGACGGAGGGAGACGAGGAGTGGGTGGAAGGGGAAGGGGAGG
AGAAGAAGGAGGCGGTGGAAGCAGAGGGGGATGAGAAGCAGCAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAAGGGGGAAGAGGAGGAGGAGGAAGA
GAAAGGGGAGGAGGAGGCGGAGGCGGTGGAAGCAGAGGAGGAGAGGGGGG
AAGGAGGAGGAGGAGGAGGAGGAGGTCACGGGCGGGCCATCCGAGGACTT
TGTTGGTGTGACACCTGTGAACAATTCTTGTCCCGGGACGGCAATGGGGC
ACGTAACATCCTGCGGGTGTAA
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Synonyms
Publications