NO12G01910.1, NO12G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01910.1
Unique NameNO12G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1332
Alignment locationchr12:546318..547761 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:546318..547761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01910.1 vs.
Match: EWM25801.1 (peroxisomal biogenesis factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 580.1 bits (1494), Expect = 5.900e-162
Identity = 312/451 (69.18%), Postives = 354/451 (78.49%), Query Frame = 0 
Query:    1 MESLSKAYHFLRRNRRAIGLVAGVSAAGLAMWRVKRVLDEYKRLIKEHDVARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVNEIVDVTSPVKALKAGRGELSKEQEQALWQQVKVSGFTRFFLAYYGFTLLNVMLRVQVHILGRYAFETSRRE-IDGAQQQQQQQQ----HTCSLNDEQVYAAAGAPTFGADDRCKLLSLVYEFFLGEGLRRLKESVEIVISEELGGWSVHDKVHVGYEELHDAFSRIRRRMEGPRGVTTAELPLLQYIVDMSSITEDELGGGGNILHEMVNETWDALESPSFKLAVEDCLDATFRVFLEDLFVCLYASRPAPASLASKTIGRMRNVEEEEDAKGR-MGEGKERGGFLQ-EPQETGQDSSPESNPGQGGKASDK--DPPLAKLIPHMKNAATKVFNNDPQSNEYIRVTAQNRSVNLLCSSFFTTEISF 443
            M  L + YHFL+RNRRAIGL+AG SAAG A WR+KRVLD+YKR+I+EHD+ARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRV EIVDVTSPVKALKAGRG LSK++EQALW QVKVSGF+RFFLAYYGF LLNVMLRVQVHILGRYAFE SR+E +  AQ+ Q++ Q      CSL D   YAA G+ +FG+DDRC+LLSLVYE FLGEGLRRLKE+VE+ + EELG WSVH K+HV Y ELHDA  RIRRR+EGPRGV  AE PLLQY++D +S  ED LG  G+ LHEMVNETWDA ESPSFKLAVEDCLD TFRVFLEDLF  LYAS P+ +          R+     D K R +GEG   G   +   +E G + + +S+  + G    K  DPPLAKLIPHMKNAATKVFN DPQ+NEYIR+TAQNRSVNLLCSSFFT E SF
Sbjct:    1 MGRLQQVYHFLKRNRRAIGLIAGASAAGFAAWRIKRVLDDYKRIIREHDLARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVYEIVDVTSPVKALKAGRGGLSKQEEQALWHQVKVSGFSRFFLAYYGFNLLNVMLRVQVHILGRYAFEASRQEMLQAAQRDQEEGQGPRGEFCSLGDAG-YAATGSSSFGSDDRCRLLSLVYEHFLGEGLRRLKEAVEVAVREELGAWSVHAKIHVDYAELHDALMRIRRRLEGPRGVLLAESPLLQYVLDAASQAED-LGPPGSRLHEMVNETWDAFESPSFKLAVEDCLDVTFRVFLEDLFRSLYASPPSAS----------RSARPGADEKERPLGEGIGEGPVAERSTEEEGSEEARDSDADRAGAEESKPLDPPLAKLIPHMKNAATKVFNGDPQNNEYIRITAQNRSVNLLCSSFFTIETSF 439
The following BLAST results are available for this feature:
BLAST of NO12G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25801.15.900e-16269.18peroxisomal biogenesis factor 3 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01910NO12G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01910.1NO12G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01910.1.cds1NO12G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01910.1.cds2NO12G01910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01910.1 ID=NO12G01910.1|Name=NO12G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGGAGAGCCTGTCGAAAGCCTACCACTTCCTGCGGAGAAACAGACGTGC
CATTGGCCTGGTTGCAGGGGTGTCCGCCGCCGGGCTGGCCATGTGGCGGG
TGAAGCGGGTATTGGACGAGTACAAGCGCCTCATCAAGGAGCATGATGTG
GCCCGCTTGGATCAGCATCGGTTGCAAATGCACATGCTCAGATCCCGCGG
GGAGTGTGTGCCAGCCCTGCTCAATTTTATGCAGACCCTGCGGAAGCGCG
TGAACGAAATTGTTGACGTGACTTCTCCCGTCAAGGCGCTCAAGGCCGGT
CGAGGGGAGCTGAGCAAAGAGCAAGAGCAAGCTTTATGGCAGCAGGTGAA
AGTGTCGGGTTTTACTCGCTTCTTTTTGGCTTACTATGGCTTTACCTTGC
TCAATGTGATGCTGCGTGTCCAGGTGCATATATTGGGTCGGTATGCTTTT
GAGACGTCTCGACGAGAGATTGATGGCGCACAGCAGCAGCAGCAGCAGCA
GCAGCACACTTGTAGCTTGAATGATGAACAGGTATATGCAGCTGCGGGCG
CTCCTACGTTTGGGGCGGATGATAGGTGCAAGTTGCTGTCTTTGGTATAT
GAGTTTTTCCTAGGGGAGGGGCTGCGGCGGTTGAAAGAGAGTGTGGAGAT
AGTGATTAGCGAGGAGCTTGGAGGTTGGTCAGTGCACGACAAGGTGCATG
TGGGGTATGAGGAGCTGCATGATGCCTTTTCGAGGATTCGTAGGAGGATG
GAGGGGCCAAGGGGGGTGACGACGGCGGAGTTGCCGTTGTTGCAGTATAT
CGTGGATATGAGTAGTATTACCGAGGATGAGTTGGGTGGGGGTGGGAATA
TCTTGCATGAGATGGTGAATGAAACTTGGGACGCTTTGGAGAGCCCGAGT
TTTAAGTTGGCGGTGGAGGATTGTTTGGATGCGACATTCCGGGTGTTCTT
GGAGGATTTATTTGTGTGCCTTTATGCTTCCCGACCAGCGCCAGCATCGC
TGGCGAGCAAGACGATCGGGCGCATGAGGAATGTGGAAGAGGAGGAGGAT
GCGAAAGGAAGGATGGGGGAAGGGAAGGAAAGGGGGGGCTTTCTGCAGGA
ACCGCAAGAGACGGGCCAGGATTCAAGCCCGGAGAGTAATCCAGGGCAGG
GAGGAAAGGCGTCTGACAAGGACCCACCGTTGGCGAAGCTGATACCTCAT
ATGAAGAACGCAGCGACCAAGGTGTTCAATAATGACCCGCAGAGCAACGA
GTATATTCGAGTGACGGCTCAGAATCGAAGCGTGAATTTGCTGTGTTCTT
CATTTTTTACGACCGAGATATCATTTGTCTAG
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protein sequence of NO12G01910.1

>NO12G01910.1-protein ID=NO12G01910.1-protein|Name=NO12G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MESLSKAYHFLRRNRRAIGLVAGVSAAGLAMWRVKRVLDEYKRLIKEHDV
ARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVNEIVDVTSPVKALKAG
RGELSKEQEQALWQQVKVSGFTRFFLAYYGFTLLNVMLRVQVHILGRYAF
ETSRREIDGAQQQQQQQQHTCSLNDEQVYAAAGAPTFGADDRCKLLSLVY
EFFLGEGLRRLKESVEIVISEELGGWSVHDKVHVGYEELHDAFSRIRRRM
EGPRGVTTAELPLLQYIVDMSSITEDELGGGGNILHEMVNETWDALESPS
FKLAVEDCLDATFRVFLEDLFVCLYASRPAPASLASKTIGRMRNVEEEED
AKGRMGEGKERGGFLQEPQETGQDSSPESNPGQGGKASDKDPPLAKLIPH
MKNAATKVFNNDPQSNEYIRVTAQNRSVNLLCSSFFTTEISFV*
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mRNA from alignment at chr12:546318..547761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01910.1 ID=NO12G01910.1|Name=NO12G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp|location=Sequence derived from alignment at chr12:546318..547761+ (Nannochloropsis oceanica)
ATGGAGAGCCTGTCGAAAGCCTACCACTTCCTGCGGAGAAACAGACGTGC
CATTGGCCTGGTTGCAGGGGTGTCCGCCGCCGGGCTGGCCATGTGGCGGG
TGAAGCGGGTATTGGACGAGTACAAGCGCCTCATCAAGGAGCATGATGTG
GCCCGCTTGGATCAGCATCGGTAGGTTTGTCTTTGATTTTGTTGTTGTCG
CATCTGAGGGTATGGGCGTGTGGGAAATGCCACCAGACCCGACCCTCTCA
TCACCCATTTCCCACGCCCCACACTACTACAGGTTGCAAATGCACATGCT
CAGATCCCGCGGGGAGTGTGTGCCAGCCCTGCTCAATTTTATGCAGACCC
TGCGGAAGCGCGTGAACGAAATTGTTGACGTGACTTCTCCCGTCAAGGCG
CTCAAGGCCGGTCGAGGGGAGCTGAGCAAAGAGCAAGAGCAAGCTTTATG
GCAGCAGGTGAAAGTGTCGGGTTTTACTCGCTTCTTTTTGGCTTACTATG
GCTTTACCTTGCTCAATGTGATGCTGCGTGTCCAGGTGCATATATTGGGT
CGGTATGCTTTTGAGACGTCTCGACGAGAGATTGATGGCGCACAGCAGCA
GCAGCAGCAGCAGCAGCACACTTGTAGCTTGAATGATGAACAGGTATATG
CAGCTGCGGGCGCTCCTACGTTTGGGGCGGATGATAGGTGCAAGTTGCTG
TCTTTGGTATATGAGTTTTTCCTAGGGGAGGGGCTGCGGCGGTTGAAAGA
GAGTGTGGAGATAGTGATTAGCGAGGAGCTTGGAGGTTGGTCAGTGCACG
ACAAGGTGCATGTGGGGTATGAGGAGCTGCATGATGCCTTTTCGAGGATT
CGTAGGAGGATGGAGGGGCCAAGGGGGGTGACGACGGCGGAGTTGCCGTT
GTTGCAGTATATCGTGGATATGAGTAGTATTACCGAGGATGAGTTGGGTG
GGGGTGGGAATATCTTGCATGAGATGGTGAATGAAACTTGGGACGCTTTG
GAGAGCCCGAGTTTTAAGTTGGCGGTGGAGGATTGTTTGGATGCGACATT
CCGGGTGTTCTTGGAGGATTTATTTGTGTGCCTTTATGCTTCCCGACCAG
CGCCAGCATCGCTGGCGAGCAAGACGATCGGGCGCATGAGGAATGTGGAA
GAGGAGGAGGATGCGAAAGGAAGGATGGGGGAAGGGAAGGAAAGGGGGGG
CTTTCTGCAGGAACCGCAAGAGACGGGCCAGGATTCAAGCCCGGAGAGTA
ATCCAGGGCAGGGAGGAAAGGCGTCTGACAAGGACCCACCGTTGGCGAAG
CTGATACCTCATATGAAGAACGCAGCGACCAAGGTGTTCAATAATGACCC
GCAGAGCAACGAGTATATTCGAGTGACGGCTCAGAATCGAAGCGTGAATT
TGCTGTGTTCTTCATTTTTTACGACCGAGATATCATTTGTCTAG
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Coding sequence (CDS) from alignment at chr12:546318..547761+

>NO12G01910.1 ID=NO12G01910.1|Name=NO12G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr12:546318..547761+ (Nannochloropsis oceanica)
ATGGAGAGCCTGTCGAAAGCCTACCACTTCCTGCGGAGAAACAGACGTGC
CATTGGCCTGGTTGCAGGGGTGTCCGCCGCCGGGCTGGCCATGTGGCGGG
TGAAGCGGGTATTGGACGAGTACAAGCGCCTCATCAAGGAGCATGATGTG
GCCCGCTTGGATCAGCATCGGTTGCAAATGCACATGCTCAGATCCCGCGG
GGAGTGTGTGCCAGCCCTGCTCAATTTTATGCAGACCCTGCGGAAGCGCG
TGAACGAAATTGTTGACGTGACTTCTCCCGTCAAGGCGCTCAAGGCCGGT
CGAGGGGAGCTGAGCAAAGAGCAAGAGCAAGCTTTATGGCAGCAGGTGAA
AGTGTCGGGTTTTACTCGCTTCTTTTTGGCTTACTATGGCTTTACCTTGC
TCAATGTGATGCTGCGTGTCCAGGTGCATATATTGGGTCGGTATGCTTTT
GAGACGTCTCGACGAGAGATTGATGGCGCACAGCAGCAGCAGCAGCAGCA
GCAGCACACTTGTAGCTTGAATGATGAACAGGTATATGCAGCTGCGGGCG
CTCCTACGTTTGGGGCGGATGATAGGTGCAAGTTGCTGTCTTTGGTATAT
GAGTTTTTCCTAGGGGAGGGGCTGCGGCGGTTGAAAGAGAGTGTGGAGAT
AGTGATTAGCGAGGAGCTTGGAGGTTGGTCAGTGCACGACAAGGTGCATG
TGGGGTATGAGGAGCTGCATGATGCCTTTTCGAGGATTCGTAGGAGGATG
GAGGGGCCAAGGGGGGTGACGACGGCGGAGTTGCCGTTGTTGCAGTATAT
CGTGGATATGAGTAGTATTACCGAGGATGAGTTGGGTGGGGGTGGGAATA
TCTTGCATGAGATGGTGAATGAAACTTGGGACGCTTTGGAGAGCCCGAGT
TTTAAGTTGGCGGTGGAGGATTGTTTGGATGCGACATTCCGGGTGTTCTT
GGAGGATTTATTTGTGTGCCTTTATGCTTCCCGACCAGCGCCAGCATCGC
TGGCGAGCAAGACGATCGGGCGCATGAGGAATGTGGAAGAGGAGGAGGAT
GCGAAAGGAAGGATGGGGGAAGGGAAGGAAAGGGGGGGCTTTCTGCAGGA
ACCGCAAGAGACGGGCCAGGATTCAAGCCCGGAGAGTAATCCAGGGCAGG
GAGGAAAGGCGTCTGACAAGGACCCACCGTTGGCGAAGCTGATACCTCAT
ATGAAGAACGCAGCGACCAAGGTGTTCAATAATGACCCGCAGAGCAACGA
GTATATTCGAGTGACGGCTCAGAATCGAAGCGTGAATTTGCTGTGTTCTT
CATTTTTTACGACCGAGATATCATTTGTCTAG
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Synonyms
Publications